Rh6AG278500

Egg cell-secreted protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0001106
Physical Location & Seq
Forward (+)
47325319 .. 47325892
574 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG278500.1

Sequence Viewer

Length: 444 bp
ATGGCTTACACATCTAAGCTTTTCCTTCTCACAGCTCTGCTTGTTCTGACCATGTCATTTGTGGTCAGTACTTCTCGATCATCGAATTACCCAACTGGGAAAAAATCAAACCTTGCAGCCAGATTGAACTTGGATGAAGAATCATCAACCTGCTGGGAGTCTTTATTTCAGCTCCAGGCATGCAGTAAAGAGGTTGTCTTGTTCTTCCTCAATGGTGAGACTTACTTAGGAGACGGCTGTTGCAAAGCCATTAGAACCATTGAGCACCAGTGTTGGCCAGCCTTGCTTGGGTCCCTAGGGCTTACCACGGAAGAGACTGATATACTAAAGGGTTACTGCGATGAAGCTGATCAAATCCAATCACCTCCGACATCGCCTTCACCACCATCTGTTCATCAGCCTACTGGAAAACTTGTTCCGGATCTGGACAAGTTGATTCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

147

Amino Acids

16.07

Weight (kDa)

4.92

Isoelectric Point (pI)

54.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prolamin_like PF05617 50 - 114 3.3e-18 Prolamin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 158
AccIII TCCGGA 1 cut(s) 418
AclWI GGATC 1 cut(s) 429
AcoI YGGCCR 1 cut(s) 275
AfaI GTAC 1 cut(s) 70
AfiI CCNNNNNNNGG 1 cut(s) 288
AgsI TTSAA 1 cut(s) 127
AjnI CCWGG 1 cut(s) 174
AloI GAACNNNNNNTCC 2 cut(s) 399, 431
AluBI AGCT 4 cut(s) 19, 35, 172, 347
AluI AGCT 4 cut(s) 19, 35, 172, 347
Alw21I GWGCWC 1 cut(s) 267
Alw26I GTCTC 3 cut(s) 212, 225, 308
AlwI GGATC 1 cut(s) 429
Aor13HI TCCGGA 1 cut(s) 418
AoxI GGCC 1 cut(s) 275
ApeKI GCWGC 1 cut(s) 116
AspA2I CCTAGG 1 cut(s) 295
AspS9I GGNCC 1 cut(s) 291
AsuHPI GGTGA 3 cut(s) 227, 354, 372
AvaII GGWCC 1 cut(s) 291
AvrII CCTAGG 1 cut(s) 295
BalI TGGCCA 1 cut(s) 277
Bbv12I GWGCWC 1 cut(s) 267
BbvI GCAGC 1 cut(s) 128
BccI CCATC 1 cut(s) 394
BceAI ACGGC 1 cut(s) 250
BciT130I CCWGG 1 cut(s) 176
BclI TGATCA 1 cut(s) 349
BcoDI GTCTC 3 cut(s) 212, 225, 308
BfaI CTAG 1 cut(s) 296
BfuAI ACCTGC 1 cut(s) 158
BisI GCNGC 1 cut(s) 117
BlnI CCTAGG 1 cut(s) 295
BlsI GCNGC 1 cut(s) 118
BmcAI AGTACT 1 cut(s) 70
Bme1390I CCNGG 1 cut(s) 176
Bme18I GGWCC 1 cut(s) 291
BmgT120I GGNCC 1 cut(s) 291
BmiI GGNNCC 2 cut(s) 292, 293
BmrFI CCNGG 1 cut(s) 176
BmrI ACTGGG 1 cut(s) 105
BmuI ACTGGG 1 cut(s) 105
BpmI CTGGAG 1 cut(s) 158
BsaJI CCNNGG 2 cut(s) 295, 306
BsaWI WCCGGW 1 cut(s) 418
Bsc4I CCNNNNNNNGG 1 cut(s) 288
Bse1I ACTGG 3 cut(s) 100, 268, 409
BseAI TCCGGA 1 cut(s) 418
BseBI CCWGG 1 cut(s) 176
BseDI CCNNGG 2 cut(s) 295, 306
BseGI GGATG 1 cut(s) 139
BseLI CCNNNNNNNGG 1 cut(s) 288
BseNI ACTGG 3 cut(s) 100, 268, 409
BseXI GCAGC 1 cut(s) 128
BseYI CCCAGC 1 cut(s) 153
BshFI GGCC 1 cut(s) 277
BsiHKAI GWGCWC 1 cut(s) 267
BsiSI CCGG 1 cut(s) 419
BslFI GGGAC 1 cut(s) 277
BslI CCNNNNNNNGG 1 cut(s) 288
BsmAI GTCTC 3 cut(s) 212, 225, 308
BsmBI CGTCTC 1 cut(s) 225
BsmFI GGGAC 1 cut(s) 277
BsnI GGCC 1 cut(s) 277
Bsp1286I GDGCHC 1 cut(s) 267
Bsp13I TCCGGA 1 cut(s) 418
Bsp143I GATC 3 cut(s) 77, 349, 421
BspANI GGCC 1 cut(s) 277
BspEI TCCGGA 1 cut(s) 418
BspLI GGNNCC 2 cut(s) 292, 293
BspMI ACCTGC 1 cut(s) 158
BspPI GGATC 1 cut(s) 429
BsrI ACTGG 3 cut(s) 100, 268, 409
BssECI CCNNGG 2 cut(s) 295, 306
BssMI GATC 3 cut(s) 77, 349, 421
BssT1I CCWWGG 1 cut(s) 295
Bst2UI CCWGG 1 cut(s) 176
Bst6I CTCTTC 1 cut(s) 306
BstC8I GCNNGC 2 cut(s) 181, 279
BstDEI CTNAG 2 cut(s) 15, 226
BstDSI CCRYGG 1 cut(s) 306
BstF5I GGATG 1 cut(s) 139
BstKTI GATC 3 cut(s) 80, 352, 424
BstMAI GTCTC 3 cut(s) 212, 225, 308
BstMBI GATC 3 cut(s) 77, 349, 421
BstMWI GCNNNNNNNGC 1 cut(s) 283
BstNI CCWGG 1 cut(s) 176
BstNSI RCATGY 1 cut(s) 183
BstSCI CCNGG 1 cut(s) 174
BstV1I GCAGC 1 cut(s) 128
BstX2I RGATCY 1 cut(s) 421
BstYI RGATCY 1 cut(s) 421
BsuRI GGCC 1 cut(s) 277
BtgI CCRYGG 1 cut(s) 306
BtgZI GCGATG 2 cut(s) 354, 357
BtsCI GGATG 1 cut(s) 139
BtsIMutI CAGTG 1 cut(s) 275
BveI ACCTGC 1 cut(s) 158
Cac8I GCNNGC 2 cut(s) 181, 279
Cfr13I GGNCC 1 cut(s) 291
Csp6I GTAC 1 cut(s) 69
CviAII CATG 2 cut(s) 52, 180
CviQI GTAC 1 cut(s) 69
DdeI CTNAG 2 cut(s) 15, 226
DpnI GATC 3 cut(s) 79, 351, 423
DpnII GATC 3 cut(s) 77, 349, 421
EaeI YGGCCR 1 cut(s) 275
Eam1104I CTCTTC 1 cut(s) 306
EarI CTCTTC 1 cut(s) 306
Eco130I CCWWGG 1 cut(s) 295
Eco47I GGWCC 1 cut(s) 291
EcoO109I RGGNCCY 1 cut(s) 291
EcoRII CCWGG 1 cut(s) 174
EcoT14I CCWWGG 1 cut(s) 295
ErhI CCWWGG 1 cut(s) 295
Esp3I CGTCTC 1 cut(s) 225
FaeI CATG 2 cut(s) 55, 183
FaiI YATR 3 cut(s) 53, 181, 323
FaqI GGGAC 1 cut(s) 277
FatI CATG 2 cut(s) 51, 179
FbaI TGATCA 1 cut(s) 349
Fnu4HI GCNGC 1 cut(s) 117
FokI GGATG 1 cut(s) 146
Fsp4HI GCNGC 1 cut(s) 117
FspBI CTAG 1 cut(s) 296
GluI GCNGC 1 cut(s) 117
GsaI CCCAGC 1 cut(s) 157
GsuI CTGGAG 1 cut(s) 158
HaeIII GGCC 1 cut(s) 277
HapII CCGG 1 cut(s) 419
Hin1II CATG 2 cut(s) 55, 183
HindIII AAGCTT 1 cut(s) 17
HinfI GANTC 3 cut(s) 140, 158, 436
HpaII CCGG 1 cut(s) 419
HphI GGTGA 3 cut(s) 227, 354, 372
Hpy188I TCNGA 2 cut(s) 48, 369
Hpy188III TCNNGA 3 cut(s) 75, 419, 425
HpyAV CCTTC 2 cut(s) 35, 387
HpyCH4V TGCA 3 cut(s) 116, 183, 243
HpyF10VI GCNNNNNNNGC 1 cut(s) 283
HpyF3I CTNAG 2 cut(s) 15, 226
Hsp92II CATG 2 cut(s) 55, 183
KflI GGGWCCC 1 cut(s) 291
Kpn2I TCCGGA 1 cut(s) 418
Ksp22I TGATCA 1 cut(s) 349
Kzo9I GATC 3 cut(s) 77, 349, 421
LmnI GCTCC 1 cut(s) 177
Lsp1109I GCAGC 1 cut(s) 128
MaeI CTAG 1 cut(s) 296
MaeIII GTNAC 1 cut(s) 332
MalI GATC 3 cut(s) 79, 351, 423
MboI GATC 3 cut(s) 77, 349, 421
MboII GAAGA 3 cut(s) 149, 196, 323
MflI RGATCY 1 cut(s) 421
MhlI GDGCHC 1 cut(s) 267
MlsI TGGCCA 1 cut(s) 277
MluCI AATT 1 cut(s) 85
MluNI TGGCCA 1 cut(s) 277
MlyI GAGTC 1 cut(s) 167
MmeI TCCRAC 1 cut(s) 392
MnlI CCTC 3 cut(s) 184, 218, 375
Mox20I TGGCCA 1 cut(s) 277
MroI TCCGGA 1 cut(s) 418
MscI TGGCCA 1 cut(s) 277
Msp20I TGGCCA 1 cut(s) 277
MspI CCGG 1 cut(s) 419
MspR9I CCNGG 1 cut(s) 176
MvaI CCWGG 1 cut(s) 176
MwoI GCNNNNNNNGC 1 cut(s) 283
NdeII GATC 3 cut(s) 77, 349, 421
NlaIII CATG 2 cut(s) 55, 183
NlaIV GGNNCC 2 cut(s) 292, 293
NspI RCATGY 1 cut(s) 183
PaeI GCATGC 1 cut(s) 183
PfeI GAWTC 2 cut(s) 140, 436
PflFI GACNNNGTC 1 cut(s) 52
PkrI GCNGC 1 cut(s) 118
PleI GAGTC 1 cut(s) 166
PpsI GAGTC 1 cut(s) 166
PpuMI RGGWCCY 1 cut(s) 291
Psp5II RGGWCCY 1 cut(s) 291
Psp6I CCWGG 1 cut(s) 174
PspFI CCCAGC 1 cut(s) 153
PspGI CCWGG 1 cut(s) 174
PspN4I GGNNCC 2 cut(s) 292, 293
PspPI GGNCC 1 cut(s) 291
PspPPI RGGWCCY 1 cut(s) 291
PsuI RGATCY 1 cut(s) 421
PsyI GACNNNGTC 1 cut(s) 52
RsaI GTAC 1 cut(s) 70
RsaNI GTAC 1 cut(s) 69
SatI GCNGC 1 cut(s) 117
Sau3AI GATC 3 cut(s) 77, 349, 421
Sau96I GGNCC 1 cut(s) 291
ScaI AGTACT 1 cut(s) 70
SchI GAGTC 1 cut(s) 167
ScrFI CCNGG 1 cut(s) 176
SduI GDGCHC 1 cut(s) 267
SetI ASST 8 cut(s) 21, 37, 114, 152, 174, 195, 349, 367
SinI GGWCC 1 cut(s) 291
SphI GCATGC 1 cut(s) 183
Sse9I AATT 1 cut(s) 85
SspMI CTAG 1 cut(s) 296
StyD4I CCNGG 1 cut(s) 174
StyI CCWWGG 1 cut(s) 295
TaqI TCGA 2 cut(s) 76, 83
TasI AATT 1 cut(s) 85
TatI WGTACW 1 cut(s) 68
TfiI GAWTC 2 cut(s) 140, 436
TscAI CASTG 1 cut(s) 275
TseI GCWGC 1 cut(s) 116
TspDTI ATGAA 3 cut(s) 150, 357, 383
TspGWI ACGGA 2 cut(s) 323, 429
TspRI CASTG 1 cut(s) 275
Tth111I GACNNNGTC 1 cut(s) 52
VpaK11BI GGWCC 1 cut(s) 291
XceI RCATGY 1 cut(s) 183
XcmI CCANNNNNNNNNTGG 2 cut(s) 58, 127
XmaJI CCTAGG 1 cut(s) 295
XspI CTAG 1 cut(s) 296
ZrmI AGTACT 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.