Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0001106

Physical Location & Seq

Genomic Coordinates Reverse (-)

3177024 .. 3177407

Gene Structure 384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G034300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGCAGCTTACACAACTTTCAAGCTCTTCCTTCTTACAGCTCTTCTAGCCTTGACTATGCCATTCTTAGCCACAAGTGCTCGCCCTTTGAATCCTAACATAATTCGGTCAAACTCGAACCTTGTAGCCTGGTTGAATTTGGATGAAGAATCTTCTAACTGCTGGGACTCTTTGTTTCAGCTCCAGTCATGTTCTAGTGAGGTTGTCATGTTTTTTCTTAATGGTGAGACTTACTTGGGTCACAGTTGCTGTGAAGCCATTCGGACCATTGAGCATCAGTGTAGGCCTGCCTTGCTTGGCACGCTAGGGTTTACCGTAGAAGAGACTGATGTACTCAAGGGTTATTGCGATGAAGCCGATCATGTTAAATCCCCGCCGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prolamin_like

Protein Analysis

128

Amino Acids

14.1

Weight (kDa)

4.71

Isoelectric Point (pI)

56.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76750
fragaria_vesca	FvH4_2g13390 FvH4_2g13400 FvH4_2g18700 FvH4_2g18870 FvH4_2g18880 FvH4_2g18910 FvH4_5g02500
malus_domestica	MD10G1029400.v1.1
prunus_persica	Prupe.8G031900_v2.0.a1 Prupe.8G032300_v2.0.a1 Prupe.8G034300_v2.0.a1 Prupe.8G034800_v2.0.a1 Prupe.8G053400_v2.0.a1 Prupe.I003300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0274951 RchiOBHm_Chr6g0284691 RchiOBHm_Chr6g0284701 RchiOBHm_Chr7g0197601
rosa_laevigata	RLG00000003923 RLG00000012730 RLG00000012731 RLG00000013506
rosa_multiflora	Rmu_co8247145.1_g000001 Rmu_sc0007474.1_g000008 Rmu_sc0007474.1_g000014 Rmu_sc0007474.1_g000019 Rmu_sc0009490.1_g000002
rosa_roxburghii	Rroxscaffold_7G00184470 Rroxscaffold_7G00184480
rosa_rugosa	Rorug06G0086700 Rorug06G0165500 Rorug06G0165600 Rorug07G0041800.1
rosa_samantha	Rh6AG201400 Rh6AG278500 Rh6AG278600 Rh6AG278700 Rh6BG205000 Rh6BG278400 Rh6BG278500 Rh6BG278800 Rh6CG206400 Rh6CG280800 Rh6CG281000 Rh6CG281100 Rh6DG196500 Rh6DG273500 Rh6DG273600 Rh6DG273700 Rh7AG166200 Rh7BG168300 Rh7CG174600 Rh7DG167900
rosa_wichuraiana	Rw6G017520 Rw6G023930 Rw6G023950 Rw6G023960 Rw7G014470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	374
AcsI	RAATTY	1 cut(s)	136
AfaI	GTAC	1 cut(s)	333
AgsI	TTSAA	3 cut(s)	22, 91, 136
AjnI	CCWGG	1 cut(s)	128
AluBI	AGCT	4 cut(s)	8, 25, 41, 181
AluI	AGCT	4 cut(s)	8, 25, 41, 181
Alw21I	GWGCWC	1 cut(s)	82
Alw26I	GTCTC	2 cut(s)	221, 317
AlwNI	CAGNNNCTG	1 cut(s)	249
AoxI	GGCC	1 cut(s)	284
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	1 cut(s)	136
Asp700I	GAANNNNTTC	1 cut(s)	258
AspS9I	GGNCC	1 cut(s)	264
AsuHPI	GGTGA	1 cut(s)	236
AvaII	GGWCC	1 cut(s)	264
Bbv12I	GWGCWC	1 cut(s)	82
BbvI	GCAGC	1 cut(s)	17
BceAI	ACGGC	1 cut(s)	361
BciT130I	CCWGG	1 cut(s)	130
BcoDI	GTCTC	2 cut(s)	221, 317
BfaI	CTAG	3 cut(s)	47, 195, 305
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	1 cut(s)	130
Bme18I	GGWCC	1 cut(s)	264
BmgT120I	GGNCC	1 cut(s)	264
BmrFI	CCNGG	1 cut(s)	130
BmsI	GCATC	1 cut(s)	283
BpmI	CTGGAG	1 cut(s)	167
BpuEI	CTTGAG	1 cut(s)	320
Bse1I	ACTGG	1 cut(s)	184
BseBI	CCWGG	1 cut(s)	130
BseGI	GGATG	1 cut(s)	148
BseNI	ACTGG	1 cut(s)	184
BseXI	GCAGC	1 cut(s)	17
BseYI	CCCAGC	1 cut(s)	162
BshFI	GGCC	1 cut(s)	286
BsiHKAI	GWGCWC	1 cut(s)	82
BslFI	GGGAC	1 cut(s)	179
BsmAI	GTCTC	2 cut(s)	221, 317
BsmFI	GGGAC	1 cut(s)	179
BsnI	GGCC	1 cut(s)	286
Bsp1286I	GDGCHC	1 cut(s)	82
Bsp143I	GATC	1 cut(s)	358
BspACI	CCGC	1 cut(s)	374
BspANI	GGCC	1 cut(s)	286
BspHI	TCATGA	1 cut(s)	380
BspQI	GCTCTTC	2 cut(s)	32, 48
BsrI	ACTGG	1 cut(s)	184
BssMI	GATC	1 cut(s)	358
Bst2UI	CCWGG	1 cut(s)	130
Bst4CI	ACNGT	2 cut(s)	245, 316
Bst6I	CTCTTC	3 cut(s)	32, 48, 315
BstC8I	GCNNGC	3 cut(s)	82, 288, 302
BstDEI	CTNAG	1 cut(s)	67
BstF5I	GGATG	1 cut(s)	148
BstKTI	GATC	1 cut(s)	361
BstMAI	GTCTC	2 cut(s)	221, 317
BstMBI	GATC	1 cut(s)	358
BstMWI	GCNNNNNNNGC	4 cut(s)	47, 77, 292, 301
BstNI	CCWGG	1 cut(s)	130
BstSCI	CCNGG	1 cut(s)	128
BstV1I	GCAGC	1 cut(s)	17
BsuRI	GGCC	1 cut(s)	286
BtgZI	GCGATG	1 cut(s)	363
BtsCI	GGATG	1 cut(s)	148
BtsIMutI	CAGTG	1 cut(s)	284
Cac8I	GCNNGC	3 cut(s)	82, 288, 302
CaiI	CAGNNNCTG	1 cut(s)	249
CciI	TCATGA	1 cut(s)	380
Cfr13I	GGNCC	1 cut(s)	264
Csp6I	GTAC	1 cut(s)	332
CviAII	CATG	4 cut(s)	189, 208, 362, 381
CviQI	GTAC	1 cut(s)	332
DdeI	CTNAG	1 cut(s)	67
DpnI	GATC	1 cut(s)	360
DpnII	GATC	1 cut(s)	358
Eam1104I	CTCTTC	3 cut(s)	32, 48, 315
EarI	CTCTTC	3 cut(s)	32, 48, 315
Eco147I	AGGCCT	1 cut(s)	286
Eco47I	GGWCC	1 cut(s)	264
EcoRII	CCWGG	1 cut(s)	128
FaeI	CATG	4 cut(s)	192, 211, 365, 384
FaiI	YATR	6 cut(s)	59, 101, 190, 209, 363, 382
FaqI	GGGAC	1 cut(s)	179
FatI	CATG	4 cut(s)	188, 207, 361, 380
FauI	CCCGC	1 cut(s)	381
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	1 cut(s)	155
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	3 cut(s)	47, 195, 305
GluI	GCNGC	1 cut(s)	6
GsaI	CCCAGC	1 cut(s)	166
GsuI	CTGGAG	1 cut(s)	167
HaeIII	GGCC	1 cut(s)	286
Hin1II	CATG	4 cut(s)	192, 211, 365, 384
HinfI	GANTC	3 cut(s)	91, 149, 167
HphI	GGTGA	1 cut(s)	236
Hpy166II	GTNNAC	1 cut(s)	312
Hpy188I	TCNGA	1 cut(s)	264
Hpy188III	TCNNGA	1 cut(s)	381
Hpy8I	GTNNAC	1 cut(s)	312
HpyAV	CCTTC	1 cut(s)	41
HpyCH4III	ACNGT	2 cut(s)	245, 316
HpyF10VI	GCNNNNNNNGC	4 cut(s)	47, 77, 292, 301
HpyF3I	CTNAG	1 cut(s)	67
Hsp92II	CATG	4 cut(s)	192, 211, 365, 384
Kzo9I	GATC	1 cut(s)	358
LguI	GCTCTTC	2 cut(s)	32, 48
LmnI	GCTCC	1 cut(s)	186
LpnPI	CCDG	5 cut(s)	115, 142, 148, 197, 300
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	1 cut(s)	283
MaeI	CTAG	3 cut(s)	47, 195, 305
MaeIII	GTNAC	1 cut(s)	239
MalI	GATC	1 cut(s)	360
MboI	GATC	1 cut(s)	358
MboII	GAAGA	5 cut(s)	19, 35, 144, 158, 332
MhlI	GDGCHC	1 cut(s)	82
MluCI	AATT	2 cut(s)	102, 136
MlyI	GAGTC	1 cut(s)	161
MnlI	CCTC	1 cut(s)	193
MroXI	GAANNNNTTC	1 cut(s)	258
MseI	TTAA	2 cut(s)	219, 366
MspR9I	CCNGG	1 cut(s)	130
MvaI	CCWGG	1 cut(s)	130
MwoI	GCNNNNNNNGC	4 cut(s)	47, 77, 292, 301
NdeII	GATC	1 cut(s)	358
NlaIII	CATG	4 cut(s)	192, 211, 365, 384
NmuCI	GTSAC	1 cut(s)	239
PagI	TCATGA	1 cut(s)	380
PceI	AGGCCT	1 cut(s)	286
PciSI	GCTCTTC	2 cut(s)	32, 48
PdmI	GAANNNNTTC	1 cut(s)	258
PfeI	GAWTC	2 cut(s)	91, 149
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	1 cut(s)	161
PpsI	GAGTC	1 cut(s)	161
Psp6I	CCWGG	1 cut(s)	128
PspFI	CCCAGC	1 cut(s)	162
PspGI	CCWGG	1 cut(s)	128
PspPI	GGNCC	1 cut(s)	264
PstNI	CAGNNNCTG	1 cut(s)	249
RsaI	GTAC	1 cut(s)	333
RsaNI	GTAC	1 cut(s)	332
SapI	GCTCTTC	2 cut(s)	32, 48
SaqAI	TTAA	2 cut(s)	219, 366
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	1 cut(s)	358
Sau96I	GGNCC	1 cut(s)	264
SchI	GAGTC	1 cut(s)	161
ScrFI	CCNGG	1 cut(s)	130
SduI	GDGCHC	1 cut(s)	82
SetI	ASST	6 cut(s)	10, 27, 43, 123, 183, 204
SfaNI	GCATC	1 cut(s)	283
SinI	GGWCC	1 cut(s)	264
SmlI	CTYRAG	1 cut(s)	335
SmoI	CTYRAG	1 cut(s)	335
Sse9I	AATT	2 cut(s)	102, 136
SseBI	AGGCCT	1 cut(s)	286
SsiI	CCGC	1 cut(s)	374
SspMI	CTAG	3 cut(s)	47, 195, 305
StuI	AGGCCT	1 cut(s)	286
StyD4I	CCNGG	1 cut(s)	128
TaaI	ACNGT	2 cut(s)	245, 316
TaqI	TCGA	1 cut(s)	116
TaqII	GACCGA	1 cut(s)	96
TasI	AATT	2 cut(s)	102, 136
TatI	WGTACW	1 cut(s)	331
TfiI	GAWTC	2 cut(s)	91, 149
Tru1I	TTAA	2 cut(s)	219, 366
Tru9I	TTAA	2 cut(s)	219, 366
TscAI	CASTG	1 cut(s)	284
TseFI	GTSAC	1 cut(s)	239
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	1 cut(s)	239
TspDTI	ATGAA	2 cut(s)	159, 366
TspRI	CASTG	1 cut(s)	284
VpaK11BI	GGWCC	1 cut(s)	264
XapI	RAATTY	1 cut(s)	136
XmnI	GAANNNNTTC	1 cut(s)	258
XspI	CTAG	3 cut(s)	47, 195, 305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.