Rh6AG278700

Egg cell-secreted protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0001106
Physical Location & Seq
Forward (+)
47361316 .. 47362544
1229 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG278700.1

Sequence Viewer

Length: 441 bp
ATGGCCGACACTTCCAAGCTTTTTCTTCTCACGGCTCTTCTAGCTCTGACTATGCCATTCATGGCTAGTAGCTTTCGGCCTTTGAATAACCGAATTGACTCTAAATCGAATCTTGCAGCCAGGTTGAAATTGGTTGGAAAATCATCAAATTGCTGGGGCTCATTGATACAGTTGCAGGCATGTAGCAGTCAGGTAGTTCTGTTCTTTCTCAATGGTGAGACTTACTTGGGACATGGTTGCTGCATAGCCATTCGGACCATTGAGCACCAGTGTTGGCCTGCCTTGCTTGGCTCCCTAGGGTTTTCCGCAGAAGAGGTTGACATTCTCAAAGGTTTTTGCGATCAGGCCATTCAACTCGAAATCTCACCGCCGCCACGACCACCATCCATTGATGAGGCTACTGGAAAAGTTGTTCCTGATATGAAGAAGTTTATTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

146

Amino Acids

15.91

Weight (kDa)

7.59

Isoelectric Point (pI)

39.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prolamin_like PF05617 50 - 114 3.2e-16 Prolamin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 306, 368, 371
AcoI YGGCCR 1 cut(s) 3
AgsI TTSAA 3 cut(s) 85, 127, 353
AjnI CCWGG 1 cut(s) 119
AloI GAACNNNNNNTCC 2 cut(s) 396, 428
AluBI AGCT 3 cut(s) 19, 44, 72
AluI AGCT 3 cut(s) 19, 44, 72
Alw21I GWGCWC 1 cut(s) 267
Alw26I GTCTC 1 cut(s) 212
AoxI GGCC 4 cut(s) 3, 77, 275, 345
ApeKI GCWGC 2 cut(s) 116, 240
AspA2I CCTAGG 1 cut(s) 295
AspS9I GGNCC 1 cut(s) 255
AsuHPI GGTGA 2 cut(s) 227, 357
AvaII GGWCC 1 cut(s) 255
AvrII CCTAGG 1 cut(s) 295
BanII GRGCYC 1 cut(s) 161
Bbv12I GWGCWC 1 cut(s) 267
BbvI GCAGC 2 cut(s) 128, 227
BccI CCATC 1 cut(s) 391
BceAI ACGGC 1 cut(s) 48
BciT130I CCWGG 1 cut(s) 121
BcoDI GTCTC 1 cut(s) 212
BfaI CTAG 3 cut(s) 41, 66, 296
BisI GCNGC 3 cut(s) 117, 241, 371
BlnI CCTAGG 1 cut(s) 295
BlsI GCNGC 3 cut(s) 118, 242, 372
Bme1390I CCNGG 1 cut(s) 121
Bme18I GGWCC 1 cut(s) 255
BmgT120I GGNCC 1 cut(s) 255
BmiI GGNNCC 1 cut(s) 292
BmrFI CCNGG 1 cut(s) 121
BsaJI CCNNGG 1 cut(s) 295
Bse1I ACTGG 2 cut(s) 268, 406
BseBI CCWGG 1 cut(s) 121
BseDI CCNNGG 1 cut(s) 295
BseGI GGATG 1 cut(s) 383
BseNI ACTGG 2 cut(s) 268, 406
BseXI GCAGC 2 cut(s) 128, 227
BseYI CCCAGC 1 cut(s) 153
BshFI GGCC 4 cut(s) 5, 79, 277, 347
BsiHKAI GWGCWC 1 cut(s) 267
BslFI GGGAC 1 cut(s) 243
BsmAI GTCTC 1 cut(s) 212
BsmFI GGGAC 1 cut(s) 243
BsnI GGCC 4 cut(s) 5, 79, 277, 347
Bsp1286I GDGCHC 2 cut(s) 161, 267
Bsp143I GATC 1 cut(s) 340
BspACI CCGC 3 cut(s) 306, 368, 371
BspANI GGCC 4 cut(s) 5, 79, 277, 347
BspLI GGNNCC 1 cut(s) 292
BspQI GCTCTTC 1 cut(s) 42
BsrI ACTGG 2 cut(s) 268, 406
BssECI CCNNGG 1 cut(s) 295
BssMI GATC 1 cut(s) 340
BssT1I CCWWGG 1 cut(s) 295
Bst2UI CCWGG 1 cut(s) 121
Bst4CI ACNGT 1 cut(s) 171
Bst6I CTCTTC 2 cut(s) 42, 306
BstC8I GCNNGC 2 cut(s) 177, 279
BstF5I GGATG 1 cut(s) 383
BstKTI GATC 1 cut(s) 343
BstMAI GTCTC 1 cut(s) 212
BstMBI GATC 1 cut(s) 340
BstMWI GCNNNNNNNGC 2 cut(s) 41, 283
BstNI CCWGG 1 cut(s) 121
BstNSI RCATGY 1 cut(s) 183
BstSCI CCNGG 1 cut(s) 119
BstV1I GCAGC 2 cut(s) 128, 227
BsuRI GGCC 4 cut(s) 5, 79, 277, 347
BtsCI GGATG 1 cut(s) 383
BtsIMutI CAGTG 1 cut(s) 275
Cac8I GCNNGC 2 cut(s) 177, 279
Cfr13I GGNCC 1 cut(s) 255
CviAII CATG 3 cut(s) 61, 180, 233
DpnI GATC 1 cut(s) 342
DpnII GATC 1 cut(s) 340
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 42, 306
EarI CTCTTC 2 cut(s) 42, 306
Eco130I CCWWGG 1 cut(s) 295
Eco24I GRGCYC 1 cut(s) 161
Eco47I GGWCC 1 cut(s) 255
EcoRII CCWGG 1 cut(s) 119
EcoT14I CCWWGG 1 cut(s) 295
EcoT38I GRGCYC 1 cut(s) 161
ErhI CCWWGG 1 cut(s) 295
FaeI CATG 3 cut(s) 64, 183, 236
FaiI YATR 6 cut(s) 53, 62, 181, 234, 245, 422
FaqI GGGAC 1 cut(s) 243
FatI CATG 3 cut(s) 60, 179, 232
Fnu4HI GCNGC 3 cut(s) 117, 241, 371
FokI GGATG 1 cut(s) 370
FriOI GRGCYC 1 cut(s) 161
Fsp4HI GCNGC 3 cut(s) 117, 241, 371
FspBI CTAG 3 cut(s) 41, 66, 296
GluI GCNGC 3 cut(s) 117, 241, 371
GsaI CCCAGC 1 cut(s) 157
HaeIII GGCC 4 cut(s) 5, 79, 277, 347
Hin1II CATG 3 cut(s) 64, 183, 236
HincII GTYRAC 1 cut(s) 319
HindII GTYRAC 1 cut(s) 319
HindIII AAGCTT 1 cut(s) 17
HinfI GANTC 2 cut(s) 98, 109
HphI GGTGA 2 cut(s) 227, 357
Hpy166II GTNNAC 1 cut(s) 319
Hpy188I TCNGA 2 cut(s) 48, 255
Hpy188III TCNNGA 1 cut(s) 416
Hpy8I GTNNAC 1 cut(s) 319
HpyCH4III ACNGT 1 cut(s) 171
HpyCH4V TGCA 3 cut(s) 116, 175, 243
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 283
Hsp92II CATG 3 cut(s) 64, 183, 236
Kzo9I GATC 1 cut(s) 340
LguI GCTCTTC 1 cut(s) 42
LmnI GCTCC 1 cut(s) 296
Lsp1109I GCAGC 2 cut(s) 128, 227
MaeI CTAG 3 cut(s) 41, 66, 296
MalI GATC 1 cut(s) 342
MboI GATC 1 cut(s) 340
MboII GAAGA 4 cut(s) 17, 29, 323, 436
MhlI GDGCHC 2 cut(s) 161, 267
MluCI AATT 3 cut(s) 93, 128, 148
MlyI GAGTC 1 cut(s) 92
MmeI TCCRAC 1 cut(s) 115
MnlI CCTC 2 cut(s) 307, 388
MspR9I CCNGG 1 cut(s) 121
MvaI CCWGG 1 cut(s) 121
MwoI GCNNNNNNNGC 2 cut(s) 41, 283
NdeII GATC 1 cut(s) 340
NlaIII CATG 3 cut(s) 64, 183, 236
NlaIV GGNNCC 1 cut(s) 292
NspI RCATGY 1 cut(s) 183
PciSI GCTCTTC 1 cut(s) 42
PfeI GAWTC 1 cut(s) 109
PkrI GCNGC 3 cut(s) 118, 242, 372
PleI GAGTC 1 cut(s) 92
PpsI GAGTC 1 cut(s) 92
Psp6I CCWGG 1 cut(s) 119
PspFI CCCAGC 1 cut(s) 153
PspGI CCWGG 1 cut(s) 119
PspN4I GGNNCC 1 cut(s) 292
PspPI GGNCC 1 cut(s) 255
SapI GCTCTTC 1 cut(s) 42
SatI GCNGC 3 cut(s) 117, 241, 371
Sau3AI GATC 1 cut(s) 340
Sau96I GGNCC 1 cut(s) 255
SchI GAGTC 1 cut(s) 92
ScrFI CCNGG 1 cut(s) 121
SduI GDGCHC 2 cut(s) 161, 267
SetI ASST 7 cut(s) 21, 46, 74, 125, 195, 318, 334
SinI GGWCC 1 cut(s) 255
Sse9I AATT 3 cut(s) 93, 128, 148
SsiI CCGC 3 cut(s) 306, 368, 371
SspMI CTAG 3 cut(s) 41, 66, 296
StyD4I CCNGG 1 cut(s) 119
StyI CCWWGG 1 cut(s) 295
TaaI ACNGT 1 cut(s) 171
TaqI TCGA 2 cut(s) 107, 357
TasI AATT 3 cut(s) 93, 128, 148
TauI GCSGC 1 cut(s) 373
TfiI GAWTC 1 cut(s) 109
TscAI CASTG 1 cut(s) 275
TseI GCWGC 2 cut(s) 116, 240
TspDTI ATGAA 2 cut(s) 49, 437
TspRI CASTG 1 cut(s) 275
VpaK11BI GGWCC 1 cut(s) 255
XceI RCATGY 1 cut(s) 183
XcmI CCANNNNNNNNNTGG 1 cut(s) 127
XmaJI CCTAGG 1 cut(s) 295
XspI CTAG 3 cut(s) 41, 66, 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.