FvH4_2g18910

Egg cell-secreted protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0001106
Physical Location & Seq
Forward (+)
16102045 .. 16102931
887 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g18910.t1

Sequence Viewer

Length: 435 bp
ATGGCCAACGCTTCCAACCTTCTCCTTCTCACGGCTCTTCTAGCTCTGACTACGCCGTTCATGGCTAGTAGCTTTCGGCCTTTGAATAACCGAATCACCTCTAGATCAAATCTTGCAGCCAGGTTGAAATTGGATGGGAAATCATCAAATTGCTGGGACTCCTTGATTCATTTGAAGGCATGTAGTAGTGAGGTCATCGTGTTCTTTATAAATGGCCAGACTTACTTGGGACAAGGTTGTTGCCTAGCCATTCGGACCATTGAGCACCAGTGTTGGCCTGCCTTGCTTGGCTCCCTAGGGTTTTTCCCAGAAGAGACTGACATTCTCAGAGGTTACTGCTATGCTAATCAACTCGAAACCTCACCGACACTACCACGACCCTTTGATGAGTCTACTGGAAAATTTGTTCCTGATCTGGAGAAATATATTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

145

Amino Acids

15.96

Weight (kDa)

6.7

Isoelectric Point (pI)

48.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prolamin_like PF05617 50 - 113 2.8e-16 Prolamin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 209
AccI GTMKAC 1 cut(s) 392
AcoI YGGCCR 2 cut(s) 3, 214
AcsI RAATTY 1 cut(s) 401
AfiI CCNNNNNNNGG 1 cut(s) 31
AgsI TTSAA 3 cut(s) 85, 127, 175
AjnI CCWGG 1 cut(s) 119
AloI GAACNNNNNNTCC 2 cut(s) 390, 422
AluBI AGCT 2 cut(s) 44, 72
AluI AGCT 2 cut(s) 44, 72
Alw21I GWGCWC 1 cut(s) 267
Alw26I GTCTC 1 cut(s) 308
AoxI GGCC 4 cut(s) 3, 77, 214, 275
ApeKI GCWGC 1 cut(s) 116
ApoI RAATTY 1 cut(s) 401
AspA2I CCTAGG 1 cut(s) 295
AspS9I GGNCC 1 cut(s) 255
AsuHPI GGTGA 2 cut(s) 88, 354
AvaII GGWCC 1 cut(s) 255
AvrII CCTAGG 1 cut(s) 295
BalI TGGCCA 2 cut(s) 5, 216
Bbv12I GWGCWC 1 cut(s) 267
BbvI GCAGC 1 cut(s) 128
BccI CCATC 1 cut(s) 128
BceAI ACGGC 2 cut(s) 40, 48
BciT130I CCWGG 1 cut(s) 121
BcoDI GTCTC 1 cut(s) 308
BfaI CTAG 5 cut(s) 41, 66, 102, 245, 296
BisI GCNGC 1 cut(s) 117
BlnI CCTAGG 1 cut(s) 295
BlsI GCNGC 1 cut(s) 118
Bme1390I CCNGG 1 cut(s) 121
Bme18I GGWCC 1 cut(s) 255
BmgT120I GGNCC 1 cut(s) 255
BmiI GGNNCC 1 cut(s) 292
BmrFI CCNGG 1 cut(s) 121
BsaJI CCNNGG 1 cut(s) 295
Bsc4I CCNNNNNNNGG 1 cut(s) 31
Bse1I ACTGG 2 cut(s) 268, 400
BseBI CCWGG 1 cut(s) 121
BseDI CCNNGG 1 cut(s) 295
BseGI GGATG 1 cut(s) 139
BseLI CCNNNNNNNGG 1 cut(s) 31
BseMII CTCAG 1 cut(s) 340
BseNI ACTGG 2 cut(s) 268, 400
BseXI GCAGC 1 cut(s) 128
BseYI CCCAGC 1 cut(s) 153
BshFI GGCC 4 cut(s) 5, 79, 216, 277
BsiHKAI GWGCWC 1 cut(s) 267
BslFI GGGAC 2 cut(s) 170, 243
BslI CCNNNNNNNGG 1 cut(s) 31
BsmAI GTCTC 1 cut(s) 308
BsmFI GGGAC 2 cut(s) 170, 243
BsnI GGCC 4 cut(s) 5, 79, 216, 277
Bsp1286I GDGCHC 1 cut(s) 267
Bsp143I GATC 2 cut(s) 104, 412
BspANI GGCC 4 cut(s) 5, 79, 216, 277
BspCNI CTCAG 1 cut(s) 339
BspLI GGNNCC 1 cut(s) 292
BspQI GCTCTTC 1 cut(s) 42
BsrI ACTGG 2 cut(s) 268, 400
BssECI CCNNGG 1 cut(s) 295
BssMI GATC 2 cut(s) 104, 412
BssT1I CCWWGG 1 cut(s) 295
Bst2UI CCWGG 1 cut(s) 121
Bst6I CTCTTC 2 cut(s) 42, 306
BstC8I GCNNGC 1 cut(s) 279
BstDEI CTNAG 1 cut(s) 326
BstF5I GGATG 1 cut(s) 139
BstKTI GATC 2 cut(s) 107, 415
BstMAI GTCTC 1 cut(s) 308
BstMBI GATC 2 cut(s) 104, 412
BstMWI GCNNNNNNNGC 2 cut(s) 41, 283
BstNI CCWGG 1 cut(s) 121
BstNSI RCATGY 1 cut(s) 183
BstSCI CCNGG 1 cut(s) 119
BstV1I GCAGC 1 cut(s) 128
BsuRI GGCC 4 cut(s) 5, 79, 216, 277
BtsCI GGATG 1 cut(s) 139
BtsIMutI CAGTG 1 cut(s) 275
Cac8I GCNNGC 1 cut(s) 279
Cfr13I GGNCC 1 cut(s) 255
CviAII CATG 3 cut(s) 61, 180, 432
DdeI CTNAG 1 cut(s) 326
DpnI GATC 2 cut(s) 106, 414
DpnII GATC 2 cut(s) 104, 412
EaeI YGGCCR 2 cut(s) 3, 214
Eam1104I CTCTTC 2 cut(s) 42, 306
EarI CTCTTC 2 cut(s) 42, 306
Eco130I CCWWGG 1 cut(s) 295
Eco47I GGWCC 1 cut(s) 255
EcoRII CCWGG 1 cut(s) 119
EcoT14I CCWWGG 1 cut(s) 295
ErhI CCWWGG 1 cut(s) 295
FaeI CATG 3 cut(s) 64, 183, 435
FaiI YATR 6 cut(s) 62, 181, 209, 342, 426, 433
FaqI GGGAC 2 cut(s) 170, 243
FatI CATG 3 cut(s) 60, 179, 431
FblI GTMKAC 1 cut(s) 392
Fnu4HI GCNGC 1 cut(s) 117
FokI GGATG 1 cut(s) 146
Fsp4HI GCNGC 1 cut(s) 117
FspBI CTAG 5 cut(s) 41, 66, 102, 245, 296
GluI GCNGC 1 cut(s) 117
GsaI CCCAGC 1 cut(s) 157
HaeIII GGCC 4 cut(s) 5, 79, 216, 277
Hin1II CATG 3 cut(s) 64, 183, 435
HinfI GANTC 4 cut(s) 93, 158, 166, 389
HphI GGTGA 2 cut(s) 88, 354
Hpy166II GTNNAC 1 cut(s) 393
Hpy188I TCNGA 3 cut(s) 48, 255, 329
Hpy188III TCNNGA 3 cut(s) 102, 410, 416
Hpy8I GTNNAC 1 cut(s) 393
HpyAV CCTTC 3 cut(s) 29, 35, 169
HpyCH4V TGCA 1 cut(s) 116
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 283
HpyF3I CTNAG 1 cut(s) 326
Hsp92II CATG 3 cut(s) 64, 183, 435
Kzo9I GATC 2 cut(s) 104, 412
LguI GCTCTTC 1 cut(s) 42
LmnI GCTCC 1 cut(s) 296
Lsp1109I GCAGC 1 cut(s) 128
MaeI CTAG 5 cut(s) 41, 66, 102, 245, 296
MaeIII GTNAC 1 cut(s) 332
MalI GATC 2 cut(s) 106, 414
MboI GATC 2 cut(s) 104, 412
MboII GAAGA 2 cut(s) 29, 323
MhlI GDGCHC 1 cut(s) 267
MlsI TGGCCA 2 cut(s) 5, 216
MluCI AATT 3 cut(s) 128, 148, 401
MluNI TGGCCA 2 cut(s) 5, 216
MlyI GAGTC 2 cut(s) 152, 398
MmeI TCCRAC 1 cut(s) 39
MnlI CCTC 4 cut(s) 109, 184, 323, 370
Mox20I TGGCCA 2 cut(s) 5, 216
MscI TGGCCA 2 cut(s) 5, 216
Msp20I TGGCCA 2 cut(s) 5, 216
MspR9I CCNGG 1 cut(s) 121
MvaI CCWGG 1 cut(s) 121
MwoI GCNNNNNNNGC 2 cut(s) 41, 283
NdeII GATC 2 cut(s) 104, 412
NlaIII CATG 3 cut(s) 64, 183, 435
NlaIV GGNNCC 1 cut(s) 292
NspI RCATGY 1 cut(s) 183
PciSI GCTCTTC 1 cut(s) 42
PfeI GAWTC 2 cut(s) 93, 166
PkrI GCNGC 1 cut(s) 118
PleI GAGTC 2 cut(s) 152, 397
PpsI GAGTC 2 cut(s) 152, 397
PsiI TTATAA 1 cut(s) 209
Psp6I CCWGG 1 cut(s) 119
PspFI CCCAGC 1 cut(s) 153
PspGI CCWGG 1 cut(s) 119
PspN4I GGNNCC 1 cut(s) 292
PspPI GGNCC 1 cut(s) 255
SapI GCTCTTC 1 cut(s) 42
SatI GCNGC 1 cut(s) 117
Sau3AI GATC 2 cut(s) 104, 412
Sau96I GGNCC 1 cut(s) 255
SchI GAGTC 2 cut(s) 152, 398
ScrFI CCNGG 1 cut(s) 121
SduI GDGCHC 1 cut(s) 267
SetI ASST 9 cut(s) 21, 46, 74, 101, 125, 195, 238, 334, 362
SinI GGWCC 1 cut(s) 255
Sse9I AATT 3 cut(s) 128, 148, 401
SspMI CTAG 5 cut(s) 41, 66, 102, 245, 296
StyD4I CCNGG 1 cut(s) 119
StyI CCWWGG 1 cut(s) 295
TaqI TCGA 1 cut(s) 354
TasI AATT 3 cut(s) 128, 148, 401
TfiI GAWTC 2 cut(s) 93, 166
TscAI CASTG 1 cut(s) 275
TseI GCWGC 1 cut(s) 116
TspDTI ATGAA 2 cut(s) 49, 158
TspRI CASTG 1 cut(s) 275
VpaK11BI GGWCC 1 cut(s) 255
XapI RAATTY 1 cut(s) 401
XbaI TCTAGA 1 cut(s) 101
XceI RCATGY 1 cut(s) 183
XcmI CCANNNNNNNNNTGG 1 cut(s) 127
XmaJI CCTAGG 1 cut(s) 295
XmiI GTMKAC 1 cut(s) 392
XspI CTAG 5 cut(s) 41, 66, 102, 245, 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.