Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001106

Physical Location & Seq

Genomic Coordinates Forward (+)

11713620 .. 11714200

Gene Structure 581 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g13400.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGCCTTCAACACTTCCAACCTCTACCTAATTCTCACTGCTCTCCTTGCCCTCACCATGCCGTTCTTGGCTTCTGCTTATCCACCCTTGGTGACCAACAACCCAACCGGGTTGAATCCGAGCCTGGCAGCTAGGTTGAATTTGGATGCAGAATCCTCCAACTGCTGGGATTCTTTGCTTCAGCTCCAGTCATGTAGCGGTGAGGCTATAATGTTCTTCTTGAATGGCGAGACTACTTTGAGTGATGGATGTTGCGAGGCTATTCGGGTCATCGAGCACCAGTGTTGGCCTGCCTTGCTCGGTTCGCTAGGGTTTACCACCCAAGAGACTGATATTCTCAAAGGTTACTGCGACGAGACTGAGCAAACTCATCACCATTCTCCTCCTTCCATACCATCACCGTCGTCCGTTTTTCATCCTAATGGAGCGGCAGTTCGTGTTCCTTATCAGGCTGAGATGGCTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prolamin_like

Protein Analysis

156

Amino Acids

16.74

Weight (kDa)

4.56

Isoelectric Point (pI)

50.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prolamin_like	PF05617	54 - 118	3.3e-17	Prolamin-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76750
fragaria_vesca	FvH4_2g13390 FvH4_2g13400 FvH4_2g18700 FvH4_2g18870 FvH4_2g18880 FvH4_2g18910 FvH4_5g02500
malus_domestica	MD10G1029400.v1.1
prunus_persica	Prupe.8G031900_v2.0.a1 Prupe.8G032300_v2.0.a1 Prupe.8G034300_v2.0.a1 Prupe.8G034800_v2.0.a1 Prupe.8G053400_v2.0.a1 Prupe.I003300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0274951 RchiOBHm_Chr6g0284691 RchiOBHm_Chr6g0284701 RchiOBHm_Chr7g0197601
rosa_laevigata	RLG00000003923 RLG00000012730 RLG00000012731 RLG00000013506
rosa_multiflora	Rmu_co8247145.1_g000001 Rmu_sc0007474.1_g000008 Rmu_sc0007474.1_g000014 Rmu_sc0007474.1_g000019 Rmu_sc0009490.1_g000002
rosa_roxburghii	Rroxscaffold_7G00184470 Rroxscaffold_7G00184480
rosa_rugosa	Rorug06G0086700 Rorug06G0165500 Rorug06G0165600 Rorug07G0041800.1
rosa_samantha	Rh6AG201400 Rh6AG278500 Rh6AG278600 Rh6AG278700 Rh6BG205000 Rh6BG278400 Rh6BG278500 Rh6BG278800 Rh6CG206400 Rh6CG280800 Rh6CG281000 Rh6CG281100 Rh6DG196500 Rh6DG273500 Rh6DG273600 Rh6DG273700 Rh7AG166200 Rh7BG168300 Rh7CG174600 Rh7DG167900
rosa_wichuraiana	Rw6G017520 Rw6G023930 Rw6G023950 Rw6G023960 Rw7G014470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	165
AccBSI	CCGCTC	1 cut(s)	428
AciI	CCGC	2 cut(s)	198, 428
AcsI	RAATTY	1 cut(s)	139
AcuI	CTGAAG	1 cut(s)	164
AfiI	CCNNNNNNNGG	1 cut(s)	165
AgsI	TTSAA	4 cut(s)	10, 115, 139, 223
AjnI	CCWGG	1 cut(s)	123
AloI	GAACNNNNNNTCC	2 cut(s)	417, 449
AluBI	AGCT	2 cut(s)	131, 184
AluI	AGCT	2 cut(s)	131, 184
Alw21I	GWGCWC	1 cut(s)	279
Alw26I	GTCTC	3 cut(s)	224, 320, 350
AoxI	GGCC	2 cut(s)	3, 287
ApeKI	GCWGC	1 cut(s)	128
ApoI	RAATTY	1 cut(s)	139
AsuC2I	CCSGG	1 cut(s)	109
AsuHPI	GGTGA	5 cut(s)	46, 103, 212, 365, 390
Bbv12I	GWGCWC	1 cut(s)	279
BbvI	GCAGC	1 cut(s)	140
BccI	CCATC	3 cut(s)	239, 403, 451
BceAI	ACGGC	1 cut(s)	46
BciT130I	CCWGG	1 cut(s)	125
BcnI	CCSGG	1 cut(s)	109
BcoDI	GTCTC	3 cut(s)	224, 320, 350
BfaI	CTAG	2 cut(s)	132, 308
BisI	GCNGC	2 cut(s)	129, 429
BlsI	GCNGC	2 cut(s)	130, 430
Bme1390I	CCNGG	2 cut(s)	109, 125
BmiI	GGNNCC	1 cut(s)	462
BmrFI	CCNGG	2 cut(s)	109, 125
BmsI	GCATC	1 cut(s)	136
BpmI	CTGGAG	1 cut(s)	170
BpuMI	CCSGG	1 cut(s)	109
BsaJI	CCNNGG	1 cut(s)	87
BsaXI	ACNNNNNCTCC	2 cut(s)	417, 447
Bsc4I	CCNNNNNNNGG	1 cut(s)	165
Bse1I	ACTGG	2 cut(s)	187, 280
BseBI	CCWGG	1 cut(s)	125
BseDI	CCNNGG	1 cut(s)	87
BseGI	GGATG	3 cut(s)	151, 254, 415
BseLI	CCNNNNNNNGG	1 cut(s)	165
BseMII	CTCAG	2 cut(s)	351, 444
BseNI	ACTGG	2 cut(s)	187, 280
BseRI	GAGGAG	1 cut(s)	372
BseXI	GCAGC	1 cut(s)	140
BseYI	CCCAGC	1 cut(s)	165
BshFI	GGCC	2 cut(s)	5, 289
BsiHKAI	GWGCWC	1 cut(s)	279
BsiSI	CCGG	1 cut(s)	108
BslI	CCNNNNNNNGG	1 cut(s)	165
BsmAI	GTCTC	3 cut(s)	224, 320, 350
BsnI	GGCC	2 cut(s)	5, 289
Bsp1286I	GDGCHC	1 cut(s)	279
BspACI	CCGC	2 cut(s)	198, 428
BspANI	GGCC	2 cut(s)	5, 289
BspCNI	CTCAG	2 cut(s)	352, 445
BspLI	GGNNCC	1 cut(s)	462
BsrBI	CCGCTC	1 cut(s)	428
BsrI	ACTGG	2 cut(s)	187, 280
BssECI	CCNNGG	1 cut(s)	87
BssT1I	CCWWGG	1 cut(s)	87
Bst2UI	CCWGG	1 cut(s)	125
Bst4CI	ACNGT	1 cut(s)	402
BstC8I	GCNNGC	1 cut(s)	291
BstDEI	CTNAG	2 cut(s)	360, 453
BstEII	GGTNACC	1 cut(s)	91
BstF5I	GGATG	3 cut(s)	151, 254, 415
BstMAI	GTCTC	3 cut(s)	224, 320, 350
BstMWI	GCNNNNNNNGC	4 cut(s)	47, 295, 304, 458
BstNI	CCWGG	1 cut(s)	125
BstPI	GGTNACC	1 cut(s)	91
BstSCI	CCNGG	2 cut(s)	107, 123
BstV1I	GCAGC	1 cut(s)	140
BsuRI	GGCC	2 cut(s)	5, 289
BtsCI	GGATG	3 cut(s)	151, 254, 415
BtsI	GCAGTG	1 cut(s)	36
BtsIMutI	CAGTG	2 cut(s)	36, 287
Cac8I	GCNNGC	1 cut(s)	291
CviAII	CATG	2 cut(s)	58, 192
DdeI	CTNAG	2 cut(s)	360, 453
Eco130I	CCWWGG	1 cut(s)	87
Eco57I	CTGAAG	1 cut(s)	164
Eco91I	GGTNACC	1 cut(s)	91
EcoO65I	GGTNACC	1 cut(s)	91
EcoRII	CCWGG	1 cut(s)	123
EcoT14I	CCWWGG	1 cut(s)	87
ErhI	CCWWGG	1 cut(s)	87
FaeI	CATG	2 cut(s)	61, 195
FaiI	YATR	4 cut(s)	59, 193, 209, 392
FatI	CATG	2 cut(s)	57, 191
Fnu4HI	GCNGC	2 cut(s)	129, 429
FokI	GGATG	3 cut(s)	158, 261, 402
Fsp4HI	GCNGC	2 cut(s)	129, 429
FspBI	CTAG	2 cut(s)	132, 308
GluI	GCNGC	2 cut(s)	129, 429
GsaI	CCCAGC	1 cut(s)	169
GsuI	CTGGAG	1 cut(s)	170
HaeIII	GGCC	2 cut(s)	5, 289
HapII	CCGG	1 cut(s)	108
Hin1II	CATG	2 cut(s)	61, 195
HinfI	GANTC	3 cut(s)	115, 152, 170
HpaII	CCGG	1 cut(s)	108
HphI	GGTGA	5 cut(s)	46, 103, 212, 365, 390
Hpy166II	GTNNAC	1 cut(s)	315
Hpy188I	TCNGA	1 cut(s)	120
Hpy188III	TCNNGA	1 cut(s)	220
Hpy8I	GTNNAC	1 cut(s)	315
Hpy99I	CGWCG	2 cut(s)	356, 406
HpyAV	CCTTC	2 cut(s)	16, 396
HpyCH4III	ACNGT	1 cut(s)	402
HpyCH4V	TGCA	1 cut(s)	149
HpyF10VI	GCNNNNNNNGC	4 cut(s)	47, 295, 304, 458
HpyF3I	CTNAG	2 cut(s)	360, 453
Hsp92II	CATG	2 cut(s)	61, 195
LmnI	GCTCC	3 cut(s)	189, 425, 466
LpnPI	CCDG	8 cut(s)	110, 121, 137, 151, 200, 293, 303, 434
Lsp1109I	GCAGC	1 cut(s)	140
LweI	GCATC	1 cut(s)	136
MaeI	CTAG	2 cut(s)	132, 308
MaeIII	GTNAC	2 cut(s)	91, 344
MbiI	CCGCTC	1 cut(s)	428
MboII	GAAGA	1 cut(s)	208
MhlI	GDGCHC	1 cut(s)	279
MluCI	AATT	2 cut(s)	30, 139
MmeI	TCCRAC	2 cut(s)	42, 183
MnlI	CCTC	6 cut(s)	32, 62, 166, 196, 250, 393
MslI	CAYNNNNRTG	1 cut(s)	420
MspI	CCGG	1 cut(s)	108
MspR9I	CCNGG	2 cut(s)	109, 125
MvaI	CCWGG	1 cut(s)	125
MwoI	GCNNNNNNNGC	4 cut(s)	47, 295, 304, 458
NciI	CCSGG	1 cut(s)	109
NlaIII	CATG	2 cut(s)	61, 195
NlaIV	GGNNCC	1 cut(s)	462
NmuCI	GTSAC	1 cut(s)	91
PfeI	GAWTC	3 cut(s)	115, 152, 170
PflMI	CCANNNNNTGG	1 cut(s)	165
PkrI	GCNGC	2 cut(s)	130, 430
Psp6I	CCWGG	1 cut(s)	123
PspEI	GGTNACC	1 cut(s)	91
PspFI	CCCAGC	1 cut(s)	165
PspGI	CCWGG	1 cut(s)	123
PspN4I	GGNNCC	1 cut(s)	462
RseI	CAYNNNNRTG	1 cut(s)	420
SatI	GCNGC	2 cut(s)	129, 429
ScrFI	CCNGG	2 cut(s)	109, 125
SduI	GDGCHC	1 cut(s)	279
SetI	ASST	6 cut(s)	24, 30, 133, 137, 186, 346
SfaNI	GCATC	1 cut(s)	136
SmiMI	CAYNNNNRTG	1 cut(s)	420
Sse9I	AATT	2 cut(s)	30, 139
SsiI	CCGC	2 cut(s)	198, 428
SspMI	CTAG	2 cut(s)	132, 308
StyD4I	CCNGG	2 cut(s)	107, 123
StyI	CCWWGG	1 cut(s)	87
TaaI	ACNGT	1 cut(s)	402
TaqI	TCGA	1 cut(s)	273
TasI	AATT	2 cut(s)	30, 139
TauI	GCSGC	1 cut(s)	431
TfiI	GAWTC	3 cut(s)	115, 152, 170
TscAI	CASTG	2 cut(s)	43, 287
TseFI	GTSAC	1 cut(s)	91
TseI	GCWGC	1 cut(s)	128
Tsp45I	GTSAC	1 cut(s)	91
TspDTI	ATGAA	1 cut(s)	404
TspGWI	ACGGA	1 cut(s)	397
TspRI	CASTG	2 cut(s)	43, 287
Van91I	CCANNNNNTGG	1 cut(s)	165
XapI	RAATTY	1 cut(s)	139
XcmI	CCANNNNNNNNNTGG	1 cut(s)	64
XspI	CTAG	2 cut(s)	132, 308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.