Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001106

Physical Location & Seq

Genomic Coordinates Reverse (-)

13128000 .. 13128359

Gene Structure 360 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG168300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGCCATGCCATTCATGGCCAGTTTTGGTCCTTTGATGAATAACCCGCGAATTGGGTCGTACCCCCGGAACCTTGCAACCAGGTTGAATCTGGTTGGAGAATCATCAAACTGCTGGGACTCTCTGCTTCAGCTCCATGCATGTAGTGGCGAAGTTATCTTGTTTTTCTTCAATGGTGAGACTTACTTGGGCCATAGCTGTTGTGAAGCCATTCAGACGATTGAGCATCAGTGTTGGCCTGCCTTGCTCGGCACGCTAGGGTTTACCACGCAAGAGACGGATGTACTCAAAGGTTATTGCGATAAAGCCGATCAAATTCATTCTCCTCCGTCTCCACCATCCCCAGCCACCCTCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prolamin_like

Protein Analysis

119

Amino Acids

13.03

Weight (kDa)

5.09

Isoelectric Point (pI)

55.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prolamin_like	PF05617	37 - 101	7.8e-19	Prolamin-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76750
fragaria_vesca	FvH4_2g13390 FvH4_2g13400 FvH4_2g18700 FvH4_2g18870 FvH4_2g18880 FvH4_2g18910 FvH4_5g02500
malus_domestica	MD10G1029400.v1.1
prunus_persica	Prupe.8G031900_v2.0.a1 Prupe.8G032300_v2.0.a1 Prupe.8G034300_v2.0.a1 Prupe.8G034800_v2.0.a1 Prupe.8G053400_v2.0.a1 Prupe.I003300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0274951 RchiOBHm_Chr6g0284691 RchiOBHm_Chr6g0284701 RchiOBHm_Chr7g0197601
rosa_laevigata	RLG00000003923 RLG00000012730 RLG00000012731 RLG00000013506
rosa_multiflora	Rmu_co8247145.1_g000001 Rmu_sc0007474.1_g000008 Rmu_sc0007474.1_g000014 Rmu_sc0007474.1_g000019 Rmu_sc0009490.1_g000002
rosa_roxburghii	Rroxscaffold_7G00184470 Rroxscaffold_7G00184480
rosa_rugosa	Rorug06G0086700 Rorug06G0165500 Rorug06G0165600 Rorug07G0041800.1
rosa_samantha	Rh6AG201400 Rh6AG278500 Rh6AG278600 Rh6AG278700 Rh6BG205000 Rh6BG278400 Rh6BG278500 Rh6BG278800 Rh6CG206400 Rh6CG280800 Rh6CG281000 Rh6CG281100 Rh6DG196500 Rh6DG273500 Rh6DG273600 Rh6DG273700 Rh7AG166200 Rh7BG168300 Rh7CG174600 Rh7DG167900
rosa_wichuraiana	Rw6G017520 Rw6G023930 Rw6G023950 Rw6G023960 Rw7G014470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	49
AciI	CCGC	1 cut(s)	47
AcoI	YGGCCR	2 cut(s)	3, 18
AcsI	RAATTY	1 cut(s)	315
AcuI	CTGAAG	1 cut(s)	113
AfaI	GTAC	2 cut(s)	62, 285
AfiI	CCNNNNNNNGG	1 cut(s)	53
AgsI	TTSAA	2 cut(s)	88, 172
AjnI	CCWGG	1 cut(s)	80
AluBI	AGCT	2 cut(s)	133, 198
AluI	AGCT	2 cut(s)	133, 198
Alw26I	GTCTC	3 cut(s)	173, 269, 336
AoxI	GGCC	4 cut(s)	3, 18, 190, 236
ApoI	RAATTY	1 cut(s)	315
Asp700I	GAANNNNTTC	1 cut(s)	210
AspS9I	GGNCC	2 cut(s)	29, 190
AsuC2I	CCSGG	1 cut(s)	67
AsuHPI	GGTGA	1 cut(s)	188
AvaII	GGWCC	1 cut(s)	29
BalI	TGGCCA	2 cut(s)	5, 20
BccI	CCATC	1 cut(s)	346
BciT130I	CCWGG	1 cut(s)	82
BcnI	CCSGG	1 cut(s)	67
BcoDI	GTCTC	3 cut(s)	173, 269, 336
BfaI	CTAG	1 cut(s)	257
Bme1390I	CCNGG	2 cut(s)	67, 82
Bme18I	GGWCC	1 cut(s)	29
BmgT120I	GGNCC	2 cut(s)	29, 190
BmiI	GGNNCC	1 cut(s)	71
BmrFI	CCNGG	2 cut(s)	67, 82
BmsI	GCATC	1 cut(s)	235
BpuMI	CCSGG	1 cut(s)	67
BsaJI	CCNNGG	1 cut(s)	65
Bsc4I	CCNNNNNNNGG	1 cut(s)	53
Bse1I	ACTGG	1 cut(s)	21
BseBI	CCWGG	1 cut(s)	82
BseDI	CCNNGG	1 cut(s)	65
BseGI	GGATG	2 cut(s)	286, 338
BseLI	CCNNNNNNNGG	1 cut(s)	53
BseNI	ACTGG	1 cut(s)	21
BseRI	GAGGAG	1 cut(s)	315
BseYI	CCCAGC	2 cut(s)	114, 343
Bsh1236I	CGCG	1 cut(s)	49
BshFI	GGCC	4 cut(s)	5, 20, 192, 238
BsiSI	CCGG	1 cut(s)	67
BslFI	GGGAC	1 cut(s)	131
BslI	CCNNNNNNNGG	1 cut(s)	53
BsmAI	GTCTC	3 cut(s)	173, 269, 336
BsmBI	CGTCTC	2 cut(s)	269, 336
BsmFI	GGGAC	1 cut(s)	131
BsnI	GGCC	4 cut(s)	5, 20, 192, 238
Bsp143I	GATC	1 cut(s)	310
BspACI	CCGC	1 cut(s)	47
BspANI	GGCC	4 cut(s)	5, 20, 192, 238
BspFNI	CGCG	1 cut(s)	49
BspLI	GGNNCC	1 cut(s)	71
BsrI	ACTGG	1 cut(s)	21
BssECI	CCNNGG	1 cut(s)	65
BssMI	GATC	1 cut(s)	310
Bst2UI	CCWGG	1 cut(s)	82
BstC8I	GCNNGC	2 cut(s)	240, 254
BstF5I	GGATG	2 cut(s)	286, 338
BstFNI	CGCG	1 cut(s)	49
BstKTI	GATC	1 cut(s)	313
BstMAI	GTCTC	3 cut(s)	173, 269, 336
BstMBI	GATC	1 cut(s)	310
BstMWI	GCNNNNNNNGC	2 cut(s)	244, 253
BstNI	CCWGG	1 cut(s)	82
BstNSI	RCATGY	1 cut(s)	144
BstSCI	CCNGG	2 cut(s)	65, 80
BstUI	CGCG	1 cut(s)	49
BsuRI	GGCC	4 cut(s)	5, 20, 192, 238
BtsCI	GGATG	2 cut(s)	286, 338
BtsIMutI	CAGTG	1 cut(s)	236
Cac8I	GCNNGC	2 cut(s)	240, 254
Cfr13I	GGNCC	2 cut(s)	29, 190
CsiI	ACCWGGT	1 cut(s)	80
Csp6I	GTAC	2 cut(s)	61, 284
CviAII	CATG	4 cut(s)	7, 16, 137, 141
CviJI	RGCY	9 cut(s)	5, 20, 133, 192, 198, 209, 238, 308, 347
CviKI_1	RGCY	9 cut(s)	5, 20, 133, 192, 198, 209, 238, 308, 347
CviQI	GTAC	2 cut(s)	61, 284
DpnI	GATC	1 cut(s)	312
DpnII	GATC	1 cut(s)	310
EaeI	YGGCCR	2 cut(s)	3, 18
Eco47I	GGWCC	1 cut(s)	29
Eco57I	CTGAAG	1 cut(s)	113
EcoRII	CCWGG	1 cut(s)	80
EcoT22I	ATGCAT	1 cut(s)	142
Esp3I	CGTCTC	2 cut(s)	269, 336
FaeI	CATG	4 cut(s)	10, 19, 140, 144
FaiI	YATR	5 cut(s)	8, 17, 138, 142, 195
FaqI	GGGAC	1 cut(s)	131
FatI	CATG	4 cut(s)	6, 15, 136, 140
FauI	CCCGC	1 cut(s)	54
FokI	GGATG	2 cut(s)	293, 325
FspBI	CTAG	1 cut(s)	257
GsaI	CCCAGC	2 cut(s)	118, 347
HaeIII	GGCC	4 cut(s)	5, 20, 192, 238
HapII	CCGG	1 cut(s)	67
Hin1II	CATG	4 cut(s)	10, 19, 140, 144
HinfI	GANTC	3 cut(s)	88, 101, 119
HpaII	CCGG	1 cut(s)	67
HphI	GGTGA	1 cut(s)	188
Hpy166II	GTNNAC	1 cut(s)	264
Hpy188I	TCNGA	1 cut(s)	216
Hpy8I	GTNNAC	1 cut(s)	264
HpyCH4V	TGCA	2 cut(s)	77, 140
HpyF10VI	GCNNNNNNNGC	2 cut(s)	244, 253
Hsp92II	CATG	4 cut(s)	10, 19, 140, 144
Kzo9I	GATC	1 cut(s)	310
LmnI	GCTCC	1 cut(s)	138
LpnPI	CCDG	7 cut(s)	34, 67, 77, 80, 94, 100, 252
LweI	GCATC	1 cut(s)	235
MabI	ACCWGGT	1 cut(s)	80
MaeI	CTAG	1 cut(s)	257
MalI	GATC	1 cut(s)	312
MboI	GATC	1 cut(s)	310
MboII	GAAGA	1 cut(s)	160
MlsI	TGGCCA	2 cut(s)	5, 20
MluCI	AATT	2 cut(s)	51, 315
MluNI	TGGCCA	2 cut(s)	5, 20
MlyI	GAGTC	1 cut(s)	113
MmeI	TCCRAC	1 cut(s)	76
MnlI	CCTC	1 cut(s)	336
Mox20I	TGGCCA	2 cut(s)	5, 20
Mph1103I	ATGCAT	1 cut(s)	142
MroXI	GAANNNNTTC	1 cut(s)	210
MscI	TGGCCA	2 cut(s)	5, 20
Msp20I	TGGCCA	2 cut(s)	5, 20
MspI	CCGG	1 cut(s)	67
MspR9I	CCNGG	2 cut(s)	67, 82
MvaI	CCWGG	1 cut(s)	82
MvnI	CGCG	1 cut(s)	49
MwoI	GCNNNNNNNGC	2 cut(s)	244, 253
NciI	CCSGG	1 cut(s)	67
NdeII	GATC	1 cut(s)	310
NlaIII	CATG	4 cut(s)	10, 19, 140, 144
NlaIV	GGNNCC	1 cut(s)	71
NmeAIII	GCCGAG	1 cut(s)	228
NsiI	ATGCAT	1 cut(s)	142
NspI	RCATGY	1 cut(s)	144
PdmI	GAANNNNTTC	1 cut(s)	210
PfeI	GAWTC	2 cut(s)	88, 101
PleI	GAGTC	1 cut(s)	113
PpsI	GAGTC	1 cut(s)	113
Psp6I	CCWGG	1 cut(s)	80
PspFI	CCCAGC	2 cut(s)	114, 343
PspGI	CCWGG	1 cut(s)	80
PspN4I	GGNNCC	1 cut(s)	71
PspPI	GGNCC	2 cut(s)	29, 190
RsaI	GTAC	2 cut(s)	62, 285
RsaNI	GTAC	2 cut(s)	61, 284
Sau3AI	GATC	1 cut(s)	310
Sau96I	GGNCC	2 cut(s)	29, 190
SchI	GAGTC	1 cut(s)	113
ScrFI	CCNGG	2 cut(s)	67, 82
SetI	ASST	5 cut(s)	75, 86, 135, 200, 295
SexAI	ACCWGGT	1 cut(s)	80
SfaNI	GCATC	1 cut(s)	235
SinI	GGWCC	1 cut(s)	29
Sse9I	AATT	2 cut(s)	51, 315
SsiI	CCGC	1 cut(s)	47
SspMI	CTAG	1 cut(s)	257
StyD4I	CCNGG	2 cut(s)	65, 80
TasI	AATT	2 cut(s)	51, 315
TatI	WGTACW	1 cut(s)	283
TfiI	GAWTC	2 cut(s)	88, 101
TscAI	CASTG	1 cut(s)	236
TspDTI	ATGAA	3 cut(s)	4, 53, 308
TspGWI	ACGGA	2 cut(s)	293, 318
TspRI	CASTG	1 cut(s)	236
VpaK11BI	GGWCC	1 cut(s)	29
XapI	RAATTY	1 cut(s)	315
XceI	RCATGY	1 cut(s)	144
XcmI	CCANNNNNNNNNTGG	3 cut(s)	13, 88, 143
XmnI	GAANNNNTTC	1 cut(s)	210
XspI	CTAG	1 cut(s)	257
Zsp2I	ATGCAT	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.