Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0001106

Physical Location & Seq

Genomic Coordinates Forward (+)

5964102 .. 5965207

Gene Structure 1106 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G053400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGCAGCTTACACAACTTTCAAGATCTTCCTGCTCACAGCTCTTCTAGCCTTGACTATGCCATTCTTAGCCACAAGTGCTCGACCTTTGAACCCTAACCTAATTCGGTTGAACCTGAACCTCGCAGCCAGGTTGAATTTGAATGAAGAATCTTCCAATTGCTGGGACTCTTTCTGTTGTGAAGCTATTCGGGCCATTGAGCATCAGTGTTGGCCTGTCTTGCTTGGCACGCTGGGATTTACCGCAGAAGAGGCTGATGTACTCAAGGGCTACTGTGATGAAGCCGATTATATTAAATCCCCGCCATCAAATCCACCATCACCGCCATCAAGTCATGATCCTACTAATACACAAAATACTAAGTATTCATCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prolamin_like

Protein Analysis

125

Amino Acids

13.67

Weight (kDa)

4.97

Isoelectric Point (pI)

45.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76750
fragaria_vesca	FvH4_2g13390 FvH4_2g13400 FvH4_2g18700 FvH4_2g18870 FvH4_2g18880 FvH4_2g18910 FvH4_5g02500
malus_domestica	MD10G1029400.v1.1
prunus_persica	Prupe.8G031900_v2.0.a1 Prupe.8G032300_v2.0.a1 Prupe.8G034300_v2.0.a1 Prupe.8G034800_v2.0.a1 Prupe.8G053400_v2.0.a1 Prupe.I003300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0274951 RchiOBHm_Chr6g0284691 RchiOBHm_Chr6g0284701 RchiOBHm_Chr7g0197601
rosa_laevigata	RLG00000003923 RLG00000012730 RLG00000012731 RLG00000013506
rosa_multiflora	Rmu_co8247145.1_g000001 Rmu_sc0007474.1_g000008 Rmu_sc0007474.1_g000014 Rmu_sc0007474.1_g000019 Rmu_sc0009490.1_g000002
rosa_roxburghii	Rroxscaffold_7G00184470 Rroxscaffold_7G00184480
rosa_rugosa	Rorug06G0086700 Rorug06G0165500 Rorug06G0165600 Rorug07G0041800.1
rosa_samantha	Rh6AG201400 Rh6AG278500 Rh6AG278600 Rh6AG278700 Rh6BG205000 Rh6BG278400 Rh6BG278500 Rh6BG278800 Rh6CG206400 Rh6CG280800 Rh6CG281000 Rh6CG281100 Rh6DG196500 Rh6DG273500 Rh6DG273600 Rh6DG273700 Rh7AG166200 Rh7BG168300 Rh7CG174600 Rh7DG167900
rosa_wichuraiana	Rw6G017520 Rw6G023930 Rw6G023950 Rw6G023960 Rw7G014470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	162
AciI	CCGC	3 cut(s)	243, 302, 323
AclWI	GGATC	1 cut(s)	332
AcsI	RAATTY	1 cut(s)	136
AfaI	GTAC	1 cut(s)	261
AfiI	CCNNNNNNNGG	1 cut(s)	162
AgsI	TTSAA	5 cut(s)	22, 91, 112, 136, 142
AjnI	CCWGG	1 cut(s)	128
AluBI	AGCT	3 cut(s)	8, 41, 185
AluI	AGCT	3 cut(s)	8, 41, 185
Alw21I	GWGCWC	1 cut(s)	82
AlwI	GGATC	1 cut(s)	332
AoxI	GGCC	2 cut(s)	192, 212
ApeKI	GCWGC	2 cut(s)	5, 125
ApoI	RAATTY	1 cut(s)	136
Asp700I	GAANNNNTTC	1 cut(s)	186
AspS9I	GGNCC	1 cut(s)	192
AsuHPI	GGTGA	1 cut(s)	312
Bbv12I	GWGCWC	1 cut(s)	82
BbvI	GCAGC	2 cut(s)	17, 137
BccI	CCATC	3 cut(s)	313, 325, 334
BciT130I	CCWGG	1 cut(s)	130
BfaI	CTAG	1 cut(s)	47
BglII	AGATCT	1 cut(s)	24
BisI	GCNGC	2 cut(s)	6, 126
BlsI	GCNGC	2 cut(s)	7, 127
Bme1390I	CCNGG	1 cut(s)	130
BmgT120I	GGNCC	1 cut(s)	192
BmrFI	CCNGG	1 cut(s)	130
BmsI	GCATC	1 cut(s)	211
BpuEI	CTTGAG	1 cut(s)	248
Bsc4I	CCNNNNNNNGG	1 cut(s)	162
BseBI	CCWGG	1 cut(s)	130
BseLI	CCNNNNNNNGG	1 cut(s)	162
BseXI	GCAGC	2 cut(s)	17, 137
BseYI	CCCAGC	2 cut(s)	162, 232
BshFI	GGCC	2 cut(s)	194, 214
BsiHKAI	GWGCWC	1 cut(s)	82
BslFI	GGGAC	1 cut(s)	179
BslI	CCNNNNNNNGG	1 cut(s)	162
BsmFI	GGGAC	1 cut(s)	179
BsnI	GGCC	2 cut(s)	194, 214
Bsp1286I	GDGCHC	1 cut(s)	82
Bsp143I	GATC	2 cut(s)	24, 337
BspACI	CCGC	3 cut(s)	243, 302, 323
BspANI	GGCC	2 cut(s)	194, 214
BspHI	TCATGA	1 cut(s)	334
BspPI	GGATC	1 cut(s)	332
BspQI	GCTCTTC	1 cut(s)	48
BssMI	GATC	2 cut(s)	24, 337
Bst2UI	CCWGG	1 cut(s)	130
Bst4CI	ACNGT	1 cut(s)	275
Bst6I	CTCTTC	2 cut(s)	48, 243
BstC8I	GCNNGC	1 cut(s)	230
BstDEI	CTNAG	2 cut(s)	67, 360
BstKTI	GATC	2 cut(s)	27, 340
BstMBI	GATC	2 cut(s)	24, 337
BstMWI	GCNNNNNNNGC	6 cut(s)	47, 77, 191, 220, 229, 251
BstNI	CCWGG	1 cut(s)	130
BstSCI	CCNGG	1 cut(s)	128
BstV1I	GCAGC	2 cut(s)	17, 137
BstX2I	RGATCY	1 cut(s)	24
BstYI	RGATCY	1 cut(s)	24
BsuRI	GGCC	2 cut(s)	194, 214
BtsIMutI	CAGTG	1 cut(s)	212
Cac8I	GCNNGC	1 cut(s)	230
CciI	TCATGA	1 cut(s)	334
Cfr13I	GGNCC	1 cut(s)	192
Csp6I	GTAC	1 cut(s)	260
CviAII	CATG	1 cut(s)	335
CviQI	GTAC	1 cut(s)	260
DdeI	CTNAG	2 cut(s)	67, 360
DpnI	GATC	2 cut(s)	26, 339
DpnII	GATC	2 cut(s)	24, 337
Eam1104I	CTCTTC	2 cut(s)	48, 243
EarI	CTCTTC	2 cut(s)	48, 243
EcoRII	CCWGG	1 cut(s)	128
FaeI	CATG	1 cut(s)	338
FaiI	YATR	3 cut(s)	59, 291, 336
FaqI	GGGAC	1 cut(s)	179
FatI	CATG	1 cut(s)	334
FauI	CCCGC	1 cut(s)	309
Fnu4HI	GCNGC	2 cut(s)	6, 126
Fsp4HI	GCNGC	2 cut(s)	6, 126
FspBI	CTAG	1 cut(s)	47
GluI	GCNGC	2 cut(s)	6, 126
GsaI	CCCAGC	2 cut(s)	166, 236
HaeIII	GGCC	2 cut(s)	194, 214
Hin1II	CATG	1 cut(s)	338
HinfI	GANTC	2 cut(s)	149, 167
HphI	GGTGA	1 cut(s)	312
Hpy188III	TCNNGA	2 cut(s)	22, 335
HpyCH4III	ACNGT	1 cut(s)	275
HpyF10VI	GCNNNNNNNGC	6 cut(s)	47, 77, 191, 220, 229, 251
HpyF3I	CTNAG	2 cut(s)	67, 360
Hsp92II	CATG	1 cut(s)	338
Kzo9I	GATC	2 cut(s)	24, 337
LguI	GCTCTTC	1 cut(s)	48
LpnPI	CCDG	7 cut(s)	44, 115, 128, 142, 148, 218, 228
Lsp1109I	GCAGC	2 cut(s)	17, 137
LweI	GCATC	1 cut(s)	211
MaeI	CTAG	1 cut(s)	47
MalI	GATC	2 cut(s)	26, 339
MboI	GATC	2 cut(s)	24, 337
MboII	GAAGA	5 cut(s)	19, 35, 144, 158, 260
MfeI	CAATTG	1 cut(s)	157
MflI	RGATCY	1 cut(s)	24
MhlI	GDGCHC	1 cut(s)	82
MluCI	AATT	3 cut(s)	102, 136, 157
MlyI	GAGTC	1 cut(s)	161
MnlI	CCTC	2 cut(s)	131, 244
MroXI	GAANNNNTTC	1 cut(s)	186
MseI	TTAA	1 cut(s)	294
MspR9I	CCNGG	1 cut(s)	130
MunI	CAATTG	1 cut(s)	157
MvaI	CCWGG	1 cut(s)	130
MwoI	GCNNNNNNNGC	6 cut(s)	47, 77, 191, 220, 229, 251
NdeII	GATC	2 cut(s)	24, 337
NlaIII	CATG	1 cut(s)	338
PagI	TCATGA	1 cut(s)	334
PciSI	GCTCTTC	1 cut(s)	48
PdmI	GAANNNNTTC	1 cut(s)	186
PfeI	GAWTC	1 cut(s)	149
PflMI	CCANNNNNTGG	1 cut(s)	162
PkrI	GCNGC	2 cut(s)	7, 127
PleI	GAGTC	1 cut(s)	161
PpsI	GAGTC	1 cut(s)	161
Psp6I	CCWGG	1 cut(s)	128
PspFI	CCCAGC	2 cut(s)	162, 232
PspGI	CCWGG	1 cut(s)	128
PspPI	GGNCC	1 cut(s)	192
PsuI	RGATCY	1 cut(s)	24
RsaI	GTAC	1 cut(s)	261
RsaNI	GTAC	1 cut(s)	260
SapI	GCTCTTC	1 cut(s)	48
SaqAI	TTAA	1 cut(s)	294
SatI	GCNGC	2 cut(s)	6, 126
Sau3AI	GATC	2 cut(s)	24, 337
Sau96I	GGNCC	1 cut(s)	192
SchI	GAGTC	1 cut(s)	161
ScrFI	CCNGG	1 cut(s)	130
SduI	GDGCHC	1 cut(s)	82
SetI	ASST	8 cut(s)	10, 43, 88, 102, 117, 123, 134, 187
SfaNI	GCATC	1 cut(s)	211
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
Sse9I	AATT	3 cut(s)	102, 136, 157
SsiI	CCGC	3 cut(s)	243, 302, 323
SspMI	CTAG	1 cut(s)	47
StyD4I	CCNGG	1 cut(s)	128
TaaI	ACNGT	1 cut(s)	275
TaqI	TCGA	1 cut(s)	82
TasI	AATT	3 cut(s)	102, 136, 157
TatI	WGTACW	1 cut(s)	259
TfiI	GAWTC	1 cut(s)	149
Tru1I	TTAA	1 cut(s)	294
Tru9I	TTAA	1 cut(s)	294
TscAI	CASTG	1 cut(s)	212
TseI	GCWGC	2 cut(s)	5, 125
TspDTI	ATGAA	3 cut(s)	159, 294, 357
TspRI	CASTG	1 cut(s)	212
Van91I	CCANNNNNTGG	1 cut(s)	162
XapI	RAATTY	1 cut(s)	136
XmnI	GAANNNNTTC	1 cut(s)	186
XspI	CTAG	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.