Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

scaffold_23

Orthogroup ID

OG0001106

Physical Location & Seq

Genomic Coordinates Forward (+)

9296 .. 9724

Gene Structure 429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.I003300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGCGGCTTCCAACCTCTTCCTTCTCACTCTTCTAGCTTTGTGGACCATGCCACTATTCATATCCACCACCACTAGTGCTCGCTCTTTGAACTATAATCCGATTGGATCGAACTTGAACCCGAACCTCGAAGCCAGGTTGAATTTGGATGAAGAATCTTCCAACTGTTGGGACTCTTTGTTTCAGCTCCACGCATGTTCTGGTGAAGTTGTCATGTTTTTTCTGAATGGTGAGACTTACTTAGGGCATGGCTGTTGCGAAGCCATTCGAACCATTGAGCATCACTGTTGGCCTGCCTTGCTTGGCACGCTAGGATTTACAACTGAGGAGACTGATGTTCTCAAGGGTTATTGTGATGAAGCCGATCATATTCAATCCCCTCCGTCGAGACCACCATCACCACCCGCAGCTGATAAACCTATTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prolamin_like

Protein Analysis

143

Amino Acids

15.61

Weight (kDa)

4.64

Isoelectric Point (pI)

54.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76750
fragaria_vesca	FvH4_2g13390 FvH4_2g13400 FvH4_2g18700 FvH4_2g18870 FvH4_2g18880 FvH4_2g18910 FvH4_5g02500
malus_domestica	MD10G1029400.v1.1
prunus_persica	Prupe.8G031900_v2.0.a1 Prupe.8G032300_v2.0.a1 Prupe.8G034300_v2.0.a1 Prupe.8G034800_v2.0.a1 Prupe.8G053400_v2.0.a1 Prupe.I003300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0274951 RchiOBHm_Chr6g0284691 RchiOBHm_Chr6g0284701 RchiOBHm_Chr7g0197601
rosa_laevigata	RLG00000003923 RLG00000012730 RLG00000012731 RLG00000013506
rosa_multiflora	Rmu_co8247145.1_g000001 Rmu_sc0007474.1_g000008 Rmu_sc0007474.1_g000014 Rmu_sc0007474.1_g000019 Rmu_sc0009490.1_g000002
rosa_roxburghii	Rroxscaffold_7G00184470 Rroxscaffold_7G00184480
rosa_rugosa	Rorug06G0086700 Rorug06G0165500 Rorug06G0165600 Rorug07G0041800.1
rosa_samantha	Rh6AG201400 Rh6AG278500 Rh6AG278600 Rh6AG278700 Rh6BG205000 Rh6BG278400 Rh6BG278500 Rh6BG278800 Rh6CG206400 Rh6CG280800 Rh6CG281000 Rh6CG281100 Rh6DG196500 Rh6DG273500 Rh6DG273600 Rh6DG273700 Rh7AG166200 Rh7BG168300 Rh7CG174600 Rh7DG167900
rosa_wichuraiana	Rw6G017520 Rw6G023930 Rw6G023950 Rw6G023960 Rw7G014470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	168
AciI	CCGC	2 cut(s)	5, 405
AclWI	GGATC	1 cut(s)	115
AcsI	RAATTY	1 cut(s)	142
AfiI	CCNNNNNNNGG	1 cut(s)	168
AgsI	TTSAA	4 cut(s)	91, 118, 142, 374
AhlI	ACTAGT	1 cut(s)	74
AjnI	CCWGG	1 cut(s)	134
AluBI	AGCT	3 cut(s)	38, 187, 410
AluI	AGCT	3 cut(s)	38, 187, 410
Alw21I	GWGCWC	1 cut(s)	82
Alw26I	GTCTC	3 cut(s)	227, 323, 382
AlwI	GGATC	1 cut(s)	115
AoxI	GGCC	1 cut(s)	290
ApeKI	GCWGC	1 cut(s)	407
ApoI	RAATTY	1 cut(s)	142
AseI	ATTAAT	1 cut(s)	423
Asp700I	GAANNNNTTC	1 cut(s)	264
AspS9I	GGNCC	1 cut(s)	45
AsuHPI	GGTGA	3 cut(s)	215, 242, 390
AsuII	TTCGAA	1 cut(s)	268
AvaII	GGWCC	1 cut(s)	45
Bbv12I	GWGCWC	1 cut(s)	82
BbvI	GCAGC	1 cut(s)	419
BccI	CCATC	1 cut(s)	403
BciT130I	CCWGG	1 cut(s)	136
BcoDI	GTCTC	3 cut(s)	227, 323, 382
BcuI	ACTAGT	1 cut(s)	74
BfaI	CTAG	3 cut(s)	35, 75, 311
BisI	GCNGC	2 cut(s)	6, 408
BlsI	GCNGC	2 cut(s)	7, 409
Bme1390I	CCNGG	1 cut(s)	136
Bme18I	GGWCC	1 cut(s)	45
BmgT120I	GGNCC	1 cut(s)	45
BmrFI	CCNGG	1 cut(s)	136
BmsI	GCATC	1 cut(s)	289
Bpu14I	TTCGAA	1 cut(s)	268
BpuEI	CTTGAG	1 cut(s)	326
BsaI	GGTCTC	1 cut(s)	382
Bsc4I	CCNNNNNNNGG	1 cut(s)	168
BseBI	CCWGG	1 cut(s)	136
BseGI	GGATG	1 cut(s)	154
BseLI	CCNNNNNNNGG	1 cut(s)	168
BseMII	CTCAG	1 cut(s)	315
BseRI	GAGGAG	1 cut(s)	341
BseXI	GCAGC	1 cut(s)	419
BshFI	GGCC	1 cut(s)	292
BsiHKAI	GWGCWC	1 cut(s)	82
BslFI	GGGAC	1 cut(s)	185
BslI	CCNNNNNNNGG	1 cut(s)	168
BsmAI	GTCTC	3 cut(s)	227, 323, 382
BsmFI	GGGAC	1 cut(s)	185
BsnI	GGCC	1 cut(s)	292
Bso31I	GGTCTC	1 cut(s)	382
Bsp119I	TTCGAA	1 cut(s)	268
Bsp1286I	GDGCHC	1 cut(s)	82
Bsp143I	GATC	2 cut(s)	107, 364
BspACI	CCGC	2 cut(s)	5, 405
BspANI	GGCC	1 cut(s)	292
BspCNI	CTCAG	1 cut(s)	316
BspPI	GGATC	1 cut(s)	115
BspT104I	TTCGAA	1 cut(s)	268
BspTNI	GGTCTC	1 cut(s)	382
BssMI	GATC	2 cut(s)	107, 364
Bst2UI	CCWGG	1 cut(s)	136
Bst4CI	ACNGT	2 cut(s)	167, 287
Bst6I	CTCTTC	2 cut(s)	23, 36
BstBI	TTCGAA	1 cut(s)	268
BstC8I	GCNNGC	3 cut(s)	82, 294, 308
BstDEI	CTNAG	2 cut(s)	241, 324
BstF5I	GGATG	1 cut(s)	154
BstKTI	GATC	2 cut(s)	110, 367
BstMAI	GTCTC	3 cut(s)	227, 323, 382
BstMBI	GATC	2 cut(s)	107, 364
BstMWI	GCNNNNNNNGC	2 cut(s)	298, 307
BstNI	CCWGG	1 cut(s)	136
BstNSI	RCATGY	1 cut(s)	198
BstSCI	CCNGG	1 cut(s)	134
BstV1I	GCAGC	1 cut(s)	419
BsuRI	GGCC	1 cut(s)	292
BtsCI	GGATG	1 cut(s)	154
BtsIMutI	CAGTG	1 cut(s)	283
Cac8I	GCNNGC	3 cut(s)	82, 294, 308
Cfr13I	GGNCC	1 cut(s)	45
CviAII	CATG	4 cut(s)	49, 195, 214, 248
CviJI	RGCY	9 cut(s)	8, 38, 134, 187, 252, 263, 292, 362, 410
CviKI_1	RGCY	9 cut(s)	8, 38, 134, 187, 252, 263, 292, 362, 410
DdeI	CTNAG	2 cut(s)	241, 324
DpnI	GATC	2 cut(s)	109, 366
DpnII	GATC	2 cut(s)	107, 364
Eam1104I	CTCTTC	2 cut(s)	23, 36
EarI	CTCTTC	2 cut(s)	23, 36
Eco31I	GGTCTC	1 cut(s)	382
Eco47I	GGWCC	1 cut(s)	45
EcoRII	CCWGG	1 cut(s)	134
FaeI	CATG	4 cut(s)	52, 198, 217, 251
FaiI	YATR	7 cut(s)	50, 62, 96, 196, 215, 249, 369
FaqI	GGGAC	1 cut(s)	185
FatI	CATG	4 cut(s)	48, 194, 213, 247
FauI	CCCGC	1 cut(s)	412
Fnu4HI	GCNGC	2 cut(s)	6, 408
FokI	GGATG	1 cut(s)	161
Fsp4HI	GCNGC	2 cut(s)	6, 408
FspBI	CTAG	3 cut(s)	35, 75, 311
GluI	GCNGC	2 cut(s)	6, 408
HaeIII	GGCC	1 cut(s)	292
Hin1II	CATG	4 cut(s)	52, 198, 217, 251
HinfI	GANTC	2 cut(s)	155, 173
HphI	GGTGA	3 cut(s)	215, 242, 390
Hpy166II	GTNNAC	1 cut(s)	45
Hpy188I	TCNGA	2 cut(s)	102, 225
Hpy188III	TCNNGA	1 cut(s)	387
Hpy8I	GTNNAC	1 cut(s)	45
Hpy99I	CGWCG	1 cut(s)	388
HpyAV	CCTTC	1 cut(s)	32
HpyCH4III	ACNGT	2 cut(s)	167, 287
HpyF10VI	GCNNNNNNNGC	2 cut(s)	298, 307
HpyF3I	CTNAG	2 cut(s)	241, 324
Hsp92II	CATG	4 cut(s)	52, 198, 217, 251
Kzo9I	GATC	2 cut(s)	107, 364
LmnI	GCTCC	1 cut(s)	192
LpnPI	CCDG	4 cut(s)	121, 148, 186, 306
Lsp1109I	GCAGC	1 cut(s)	419
LweI	GCATC	1 cut(s)	289
MaeI	CTAG	3 cut(s)	35, 75, 311
MalI	GATC	2 cut(s)	109, 366
MboI	GATC	2 cut(s)	107, 364
MboII	GAAGA	4 cut(s)	10, 23, 150, 164
MhlI	GDGCHC	1 cut(s)	82
MluCI	AATT	2 cut(s)	142, 424
MlyI	GAGTC	1 cut(s)	167
MmeI	TCCRAC	2 cut(s)	36, 186
MnlI	CCTC	4 cut(s)	26, 137, 319, 390
MroXI	GAANNNNTTC	1 cut(s)	264
MseI	TTAA	2 cut(s)	423, 427
MspA1I	CMGCKG	1 cut(s)	410
MspR9I	CCNGG	1 cut(s)	136
MvaI	CCWGG	1 cut(s)	136
MwoI	GCNNNNNNNGC	2 cut(s)	298, 307
NdeII	GATC	2 cut(s)	107, 364
NlaIII	CATG	4 cut(s)	52, 198, 217, 251
NspI	RCATGY	1 cut(s)	198
NspV	TTCGAA	1 cut(s)	268
PacI	TTAATTAA	1 cut(s)	427
PdmI	GAANNNNTTC	1 cut(s)	264
PfeI	GAWTC	1 cut(s)	155
PflMI	CCANNNNNTGG	1 cut(s)	168
PkrI	GCNGC	2 cut(s)	7, 409
PleI	GAGTC	1 cut(s)	167
PpsI	GAGTC	1 cut(s)	167
PshBI	ATTAAT	1 cut(s)	423
Psp6I	CCWGG	1 cut(s)	134
PspGI	CCWGG	1 cut(s)	134
PspPI	GGNCC	1 cut(s)	45
PvuII	CAGCTG	1 cut(s)	410
SaqAI	TTAA	2 cut(s)	423, 427
SatI	GCNGC	2 cut(s)	6, 408
Sau3AI	GATC	2 cut(s)	107, 364
Sau96I	GGNCC	1 cut(s)	45
SchI	GAGTC	1 cut(s)	167
ScrFI	CCNGG	1 cut(s)	136
SduI	GDGCHC	1 cut(s)	82
SetI	ASST	7 cut(s)	18, 40, 129, 140, 189, 412, 421
SfaNI	GCATC	1 cut(s)	289
SfuI	TTCGAA	1 cut(s)	268
SinI	GGWCC	1 cut(s)	45
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
SpeI	ACTAGT	1 cut(s)	74
Sse9I	AATT	2 cut(s)	142, 424
SsiI	CCGC	2 cut(s)	5, 405
SspMI	CTAG	3 cut(s)	35, 75, 311
StyD4I	CCNGG	1 cut(s)	134
TaaI	ACNGT	2 cut(s)	167, 287
TaqI	TCGA	4 cut(s)	110, 129, 268, 386
TasI	AATT	2 cut(s)	142, 424
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	155
Tru1I	TTAA	2 cut(s)	423, 427
Tru9I	TTAA	2 cut(s)	423, 427
TscAI	CASTG	1 cut(s)	290
TseI	GCWGC	1 cut(s)	407
TspDTI	ATGAA	3 cut(s)	49, 165, 372
TspGWI	ACGGA	1 cut(s)	372
TspRI	CASTG	1 cut(s)	290
Van91I	CCANNNNNTGG	1 cut(s)	168
VpaK11BI	GGWCC	1 cut(s)	45
VspI	ATTAAT	1 cut(s)	423
XapI	RAATTY	1 cut(s)	142
XceI	RCATGY	1 cut(s)	198
XcmI	CCANNNNNNNNNTGG	2 cut(s)	142, 197
XmnI	GAANNNNTTC	1 cut(s)	264
XspI	CTAG	3 cut(s)	35, 75, 311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.