Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0001106

Physical Location & Seq

Genomic Coordinates Reverse (-)

3852400 .. 3852861

Gene Structure 462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1029400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGCAGCTCACACTATTTCCTTCCTCTTCCTTCTCACAGCTCTTCTAGCCCTGGCCATGCCGTTCATAGCCAGTGCGGCTCGACCTTTGAGTCGTTACTCAATTGGGTCAAGCATGAACCTCGCAGCGAGGTTGAAGTTGGACGAAGAATCAGCAAACTGCTGGGAATCTTTGTTTCAGCTGCAGGCCTGTTCCGGCGAGGTTGTCATGTTTTTCTTGAATGGTGAGACGTACATAGGGCACGGGTGTTGCGAAGCCATTCGGACCATTGAACACCAGTGTTGGCCTGCCTTGCTTGGCACGCTAGGGTTTACCACTGAAGAGACTGATGTACTCAAGGGTTACTGTGACGAAGCCGACCATATTGAGTCCCCTCCTTCTTCCACGACACCATCACCACCGTCGATCAGTAAGCCTGCTACTAAACCAGTTGCTACTGGTTGGGAGAAGTTGGTTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prolamin_like

Protein Analysis

154

Amino Acids

16.54

Weight (kDa)

4.95

Isoelectric Point (pI)

53.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prolamin_like	PF05617	53 - 117	2e-18	Prolamin-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76750
fragaria_vesca	FvH4_2g13390 FvH4_2g13400 FvH4_2g18700 FvH4_2g18870 FvH4_2g18880 FvH4_2g18910 FvH4_5g02500
malus_domestica	MD10G1029400.v1.1
prunus_persica	Prupe.8G031900_v2.0.a1 Prupe.8G032300_v2.0.a1 Prupe.8G034300_v2.0.a1 Prupe.8G034800_v2.0.a1 Prupe.8G053400_v2.0.a1 Prupe.I003300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0274951 RchiOBHm_Chr6g0284691 RchiOBHm_Chr6g0284701 RchiOBHm_Chr7g0197601
rosa_laevigata	RLG00000003923 RLG00000012730 RLG00000012731 RLG00000013506
rosa_multiflora	Rmu_co8247145.1_g000001 Rmu_sc0007474.1_g000008 Rmu_sc0007474.1_g000014 Rmu_sc0007474.1_g000019 Rmu_sc0009490.1_g000002
rosa_roxburghii	Rroxscaffold_7G00184470 Rroxscaffold_7G00184480
rosa_rugosa	Rorug06G0086700 Rorug06G0165500 Rorug06G0165600 Rorug07G0041800.1
rosa_samantha	Rh6AG201400 Rh6AG278500 Rh6AG278600 Rh6AG278700 Rh6BG205000 Rh6BG278400 Rh6BG278500 Rh6BG278800 Rh6CG206400 Rh6CG280800 Rh6CG281000 Rh6CG281100 Rh6DG196500 Rh6DG273500 Rh6DG273600 Rh6DG273700 Rh7AG166200 Rh7BG168300 Rh7CG174600 Rh7DG167900
rosa_wichuraiana	Rw6G017520 Rw6G023930 Rw6G023950 Rw6G023960 Rw7G014470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	90
AciI	CCGC	1 cut(s)	77
AcoI	YGGCCR	1 cut(s)	54
AcuI	CTGAAG	1 cut(s)	339
AfaI	GTAC	2 cut(s)	233, 333
AgsI	TTSAA	3 cut(s)	136, 220, 272
AjnI	CCWGG	1 cut(s)	51
AluBI	AGCT	3 cut(s)	8, 41, 181
AluI	AGCT	3 cut(s)	8, 41, 181
Alw26I	GTCTC	2 cut(s)	221, 317
AoxI	GGCC	3 cut(s)	54, 186, 284
ApeKI	GCWGC	3 cut(s)	5, 125, 181
Asp700I	GAANNNNTTC	1 cut(s)	258
AspS9I	GGNCC	1 cut(s)	264
AsuHPI	GGTGA	2 cut(s)	236, 387
AvaII	GGWCC	1 cut(s)	264
BaeGI	GKGCMC	1 cut(s)	243
BalI	TGGCCA	1 cut(s)	56
BbvI	GCAGC	3 cut(s)	17, 137, 168
BccI	CCATC	1 cut(s)	400
BceAI	ACGGC	1 cut(s)	46
BcgI	CGANNNNNNTGC	2 cut(s)	103, 137
BciT130I	CCWGG	1 cut(s)	53
BcoDI	GTCTC	2 cut(s)	221, 317
BfaI	CTAG	2 cut(s)	47, 305
BfmI	CTRYAG	1 cut(s)	182
BglI	GCCNNNNNGGC	1 cut(s)	77
BisI	GCNGC	4 cut(s)	6, 78, 126, 182
BlsI	GCNGC	4 cut(s)	7, 79, 127, 183
Bme1390I	CCNGG	1 cut(s)	53
Bme18I	GGWCC	1 cut(s)	264
BmgT120I	GGNCC	1 cut(s)	264
BmiI	GGNNCC	1 cut(s)	456
BmrFI	CCNGG	1 cut(s)	53
BpuEI	CTTGAG	1 cut(s)	320
BsaJI	CCNNGG	1 cut(s)	51
Bse1I	ACTGG	4 cut(s)	72, 277, 428, 442
BseBI	CCWGG	1 cut(s)	53
BseDI	CCNNGG	1 cut(s)	51
BseNI	ACTGG	4 cut(s)	72, 277, 428, 442
BseSI	GKGCMC	1 cut(s)	243
BseXI	GCAGC	3 cut(s)	17, 137, 168
BseYI	CCCAGC	1 cut(s)	162
BshFI	GGCC	3 cut(s)	56, 188, 286
BsiSI	CCGG	1 cut(s)	195
BslFI	GGGAC	1 cut(s)	355
BsmAI	GTCTC	2 cut(s)	221, 317
BsmBI	CGTCTC	1 cut(s)	221
BsmFI	GGGAC	1 cut(s)	355
BsnI	GGCC	3 cut(s)	56, 188, 286
Bsp1286I	GDGCHC	1 cut(s)	243
Bsp143I	GATC	1 cut(s)	405
BspACI	CCGC	1 cut(s)	77
BspANI	GGCC	3 cut(s)	56, 188, 286
BspLI	GGNNCC	1 cut(s)	456
BspMAI	CTGCAG	1 cut(s)	186
BspQI	GCTCTTC	1 cut(s)	48
BsrI	ACTGG	4 cut(s)	72, 277, 428, 442
BssECI	CCNNGG	1 cut(s)	51
BssMI	GATC	1 cut(s)	405
Bst2UI	CCWGG	1 cut(s)	53
Bst4CI	ACNGT	2 cut(s)	347, 402
Bst6I	CTCTTC	3 cut(s)	32, 48, 315
BstC8I	GCNNGC	4 cut(s)	186, 288, 302, 417
BstKTI	GATC	1 cut(s)	408
BstMAI	GTCTC	2 cut(s)	221, 317
BstMBI	GATC	1 cut(s)	405
BstMWI	GCNNNNNNNGC	4 cut(s)	47, 77, 292, 301
BstNI	CCWGG	1 cut(s)	53
BstSCI	CCNGG	1 cut(s)	51
BstSFI	CTRYAG	1 cut(s)	182
BstSLI	GKGCMC	1 cut(s)	243
BstV1I	GCAGC	3 cut(s)	17, 137, 168
BsuRI	GGCC	3 cut(s)	56, 188, 286
BtsIMutI	CAGTG	3 cut(s)	79, 284, 315
Cac8I	GCNNGC	4 cut(s)	186, 288, 302, 417
Cfr13I	GGNCC	1 cut(s)	264
Csp6I	GTAC	2 cut(s)	232, 332
CviAII	CATG	3 cut(s)	58, 115, 208
CviQI	GTAC	2 cut(s)	232, 332
DpnI	GATC	1 cut(s)	407
DpnII	GATC	1 cut(s)	405
DrdI	GACNNNNNNGTC	1 cut(s)	90
DseDI	GACNNNNNNGTC	1 cut(s)	90
EaeI	YGGCCR	1 cut(s)	54
Eam1104I	CTCTTC	3 cut(s)	32, 48, 315
EarI	CTCTTC	3 cut(s)	32, 48, 315
Eco147I	AGGCCT	1 cut(s)	188
Eco47I	GGWCC	1 cut(s)	264
Eco57I	CTGAAG	1 cut(s)	339
EcoRII	CCWGG	1 cut(s)	51
Esp3I	CGTCTC	1 cut(s)	221
FaeI	CATG	3 cut(s)	61, 118, 211
FaiI	YATR	6 cut(s)	59, 68, 116, 209, 236, 363
FaqI	GGGAC	1 cut(s)	355
FatI	CATG	3 cut(s)	57, 114, 207
Fnu4HI	GCNGC	4 cut(s)	6, 78, 126, 182
Fsp4HI	GCNGC	4 cut(s)	6, 78, 126, 182
FspBI	CTAG	2 cut(s)	47, 305
GluI	GCNGC	4 cut(s)	6, 78, 126, 182
GsaI	CCCAGC	1 cut(s)	166
HaeIII	GGCC	3 cut(s)	56, 188, 286
HapII	CCGG	1 cut(s)	195
Hin1II	CATG	3 cut(s)	61, 118, 211
HinfI	GANTC	4 cut(s)	91, 149, 167, 368
HpaII	CCGG	1 cut(s)	195
HphI	GGTGA	2 cut(s)	236, 387
Hpy166II	GTNNAC	1 cut(s)	312
Hpy188I	TCNGA	1 cut(s)	264
Hpy188III	TCNNGA	1 cut(s)	217
Hpy8I	GTNNAC	1 cut(s)	312
Hpy99I	CGWCG	1 cut(s)	406
HpyAV	CCTTC	3 cut(s)	31, 41, 387
HpyCH4III	ACNGT	2 cut(s)	347, 402
HpyCH4IV	ACGT	1 cut(s)	230
HpyCH4V	TGCA	1 cut(s)	184
HpyF10VI	GCNNNNNNNGC	4 cut(s)	47, 77, 292, 301
HpySE526I	ACGT	1 cut(s)	230
Hsp92II	CATG	3 cut(s)	61, 118, 211
Kzo9I	GATC	1 cut(s)	405
LguI	GCTCTTC	1 cut(s)	48
Lsp1109I	GCAGC	3 cut(s)	17, 137, 168
MaeI	CTAG	2 cut(s)	47, 305
MaeII	ACGT	1 cut(s)	230
MaeIII	GTNAC	3 cut(s)	95, 341, 347
MalI	GATC	1 cut(s)	407
MboI	GATC	1 cut(s)	405
MboII	GAAGA	5 cut(s)	19, 35, 158, 332, 372
MfeI	CAATTG	1 cut(s)	102
MhlI	GDGCHC	1 cut(s)	243
MlsI	TGGCCA	1 cut(s)	56
MluCI	AATT	1 cut(s)	102
MluNI	TGGCCA	1 cut(s)	56
MlyI	GAGTC	2 cut(s)	100, 377
MmeI	TCCRAC	1 cut(s)	120
MnlI	CCTC	5 cut(s)	35, 123, 131, 193, 384
Mox20I	TGGCCA	1 cut(s)	56
MroXI	GAANNNNTTC	1 cut(s)	258
MscI	TGGCCA	1 cut(s)	56
MseI	TTAA	1 cut(s)	460
Msp20I	TGGCCA	1 cut(s)	56
MspA1I	CMGCKG	1 cut(s)	181
MspI	CCGG	1 cut(s)	195
MspR9I	CCNGG	1 cut(s)	53
MunI	CAATTG	1 cut(s)	102
MvaI	CCWGG	1 cut(s)	53
MwoI	GCNNNNNNNGC	4 cut(s)	47, 77, 292, 301
NdeII	GATC	1 cut(s)	405
NlaIII	CATG	3 cut(s)	61, 118, 211
NlaIV	GGNNCC	1 cut(s)	456
NmuCI	GTSAC	1 cut(s)	347
PceI	AGGCCT	1 cut(s)	188
PciSI	GCTCTTC	1 cut(s)	48
PcsI	WCGNNNNNNNCGW	1 cut(s)	249
PdmI	GAANNNNTTC	1 cut(s)	258
PfeI	GAWTC	2 cut(s)	149, 167
PkrI	GCNGC	4 cut(s)	7, 79, 127, 183
PleI	GAGTC	2 cut(s)	99, 376
PpsI	GAGTC	2 cut(s)	99, 376
Psp6I	CCWGG	1 cut(s)	51
PspFI	CCCAGC	1 cut(s)	162
PspGI	CCWGG	1 cut(s)	51
PspN4I	GGNNCC	1 cut(s)	456
PspPI	GGNCC	1 cut(s)	264
PstI	CTGCAG	1 cut(s)	186
PvuII	CAGCTG	1 cut(s)	181
RsaI	GTAC	2 cut(s)	233, 333
RsaNI	GTAC	2 cut(s)	232, 332
SapI	GCTCTTC	1 cut(s)	48
SaqAI	TTAA	1 cut(s)	460
SatI	GCNGC	4 cut(s)	6, 78, 126, 182
Sau3AI	GATC	1 cut(s)	405
Sau96I	GGNCC	1 cut(s)	264
SchI	GAGTC	2 cut(s)	100, 377
ScrFI	CCNGG	1 cut(s)	53
SduI	GDGCHC	1 cut(s)	243
SetI	ASST	8 cut(s)	10, 43, 88, 123, 134, 183, 204, 233
SfcI	CTRYAG	1 cut(s)	182
SinI	GGWCC	1 cut(s)	264
SmlI	CTYRAG	1 cut(s)	335
SmoI	CTYRAG	1 cut(s)	335
Sse9I	AATT	1 cut(s)	102
SseBI	AGGCCT	1 cut(s)	188
SsiI	CCGC	1 cut(s)	77
SspMI	CTAG	2 cut(s)	47, 305
StuI	AGGCCT	1 cut(s)	188
StyD4I	CCNGG	1 cut(s)	51
TaaI	ACNGT	2 cut(s)	347, 402
TaiI	ACGT	1 cut(s)	233
TaqI	TCGA	2 cut(s)	82, 404
TasI	AATT	1 cut(s)	102
TatI	WGTACW	1 cut(s)	331
TauI	GCSGC	1 cut(s)	80
TfiI	GAWTC	2 cut(s)	149, 167
Tru1I	TTAA	1 cut(s)	460
Tru9I	TTAA	1 cut(s)	460
TscAI	CASTG	3 cut(s)	79, 284, 322
TseFI	GTSAC	1 cut(s)	347
TseI	GCWGC	3 cut(s)	5, 125, 181
Tsp45I	GTSAC	1 cut(s)	347
TspDTI	ATGAA	2 cut(s)	55, 131
TspRI	CASTG	3 cut(s)	79, 284, 322
VpaK11BI	GGWCC	1 cut(s)	264
XmnI	GAANNNNTTC	1 cut(s)	258
XspI	CTAG	2 cut(s)	47, 305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.