Rw6G023950

No apical meristem (NAM) protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0001106
Physical Location & Seq
Forward (+)
46734587 .. 46736287
1701 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G023950.1

Sequence Viewer

Length: 1701 bp
ATGGCGTCTTCATGTGTTCCTGGTCTTAATCTTCCATCGGGTTTTAAGTTTCTTCCAACCAACGAAGAACTATTGGGATATTATCTTCTGAACAAGGTCCGCGGCAAACCATTCAAGTATGACTCTAGGGTTATGAATGAATTCAATCTTTACAAGACGGAACCCTGGGATCTTTGGACTAGGTTTGGGGGCCCAAGACTGAACCAGGGTGAAGACCTCTTTATCTTTACCGAATTGAAGAAGGTGAATGATAATGGATCAAACGTGTCTCGCACGGCAGGTTCTGGCACCTGGAAAGGTGACACTGCAGGGGCCAAAGTATATGATTCAGAGGATAAGAAGAAGATCTTAGGATCGTGGAAAAGGTTTCATTACGTGCCGAATGAACCAAATGAGAATGGTTCTTGGATTATGTTCGAGTACAAGCTTGATGATTCACTAATCCCCAAATCTTGTATTGGTCGTGATCTTGTGCTGTGCCGGATTCGGAAAGACCGAAAGAGAAAGTTGATTGAAGATCAGATGAATGACACTCCTCAGTCCTCCCGTAGAAAAGTTCCAAGGGTAGACAAACATGATGTCATGTTTACTCATGGGAAACATATTATGAATGATGATACTAATCTGCCGGCTTCTTTTACTCAAGGCTTAGGTAGTGAGGATGAGGAGCAACAATCACAACAACGACAACAACTTGATTCTAACAAGAGCTTTGAGGAACAAGAAATACAACAAGAAGATCCGCAACCGAGAAGGCAACATTCTCATTTTAATGAGCAGCAGCAGCAGCTCCTCGTCAATGATCTGATGATCTCAAGTGATCATTACATATTTCAAAGGGGAGAAACTTATGATCCTATGAATATTGTTCGACCTAACCCTAATGCTGTCATCAGTCATCAGCAGAACAATCTTGGCATTCCTTCTTATTTTCATGAGCAGCAGCAGCAGCTCCTTAGTGATGATCTGATGGTTTCTTGTCATCTTGACAGATTTCAGAGGGTAGACAAACATGAATCTTATGTCATGTACACTTGCGAGAATCAGATTTTGAATGATGAAGATTATAACCTCATGGCTTCATCTGTTACTCGATGGTTATCCAGTGATGAGGAAATGCAACATCCACAACAACAACAAGAAGTCGAACCTAACAATATGTGTGCCGGACAGCACTCCTCGGTGAGCTTTGAGCGTGAGGAACAACAACTACAACAACAAGATCAGCAACTGCTGCCCTCTACCTCTGATTGCCATGAGAAACAGCAACAGCTCCTCGGCAATGATCTGATGGTTTGTAGTGATCATGACATATTTCGAAGGGCAGAAACATATGAACCTATGAATGTTCAACCTAACCCAGATACCCTCATCAGTCATCAGCCGAACCATCTTAGCATTCCCATTGACATAGATGCAATCCAATTTGATGATTATTGGACTCCGAATGAATTACTTTTGGTTGACACCAATAATGATCCTTATACCGCGGTACCTGATTCAGTACTAGACACATCAAAGCCGTTGCAGATGCAAGATTCTGCAGCTAACGATAACAACGAGATGATGAGGATTGATGAGAGTCATGTCAGACTCAACTGGGTTTCCCTCATGACTCAAACACGACGGAACTTTCTGACAGTGCTGCCCATAATGAAGCGCTCAACTTTAGCACCCTTGATGACAATGTGTTCAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

566

Amino Acids

65.79

Weight (kDa)

5.04

Isoelectric Point (pI)

51.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 12 - 143 1.1e-23 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1068
Acc36I ACCTGC 1 cut(s) 269
Acc65I GGTACC 1 cut(s) 1492
AccB1I GGYRCC 2 cut(s) 287, 1492
AccI GTMKAC 2 cut(s) 567, 1005
AccII CGCG 2 cut(s) 102, 1490
AciI CCGC 5 cut(s) 100, 102, 743, 1488, 1490
AclWI GGATC 6 cut(s) 177, 265, 361, 734, 848, 1472
AcsI RAATTY 1 cut(s) 140
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 4 cut(s) 422, 1031, 1494, 1506
AfeI AGCGCT 1 cut(s) 1661
AflIII ACRYGT 1 cut(s) 264
AgsI TTSAA 8 cut(s) 115, 145, 238, 515, 836, 1054, 1352, 1695
AjnI CCWGG 4 cut(s) 19, 164, 204, 290
AluBI AGCT 7 cut(s) 427, 711, 790, 952, 1188, 1273, 1547
AluI AGCT 7 cut(s) 427, 711, 790, 952, 1188, 1273, 1547
Alw26I GTCTC 1 cut(s) 273
AlwI GGATC 6 cut(s) 177, 265, 361, 734, 848, 1472
AlwNI CAGNNNCTG 2 cut(s) 284, 1231
Aor51HI AGCGCT 1 cut(s) 1661
AoxI GGCC 2 cut(s) 190, 312
ApaI GGGCCC 1 cut(s) 194
ApoI RAATTY 1 cut(s) 140
ArsI GACNNNNNNTTYG 2 cut(s) 564, 596
Asp700I GAANNNNTTC 1 cut(s) 140
Asp718I GGTACC 1 cut(s) 1492
AspLEI GCGC 1 cut(s) 1662
AspS9I GGNCC 4 cut(s) 97, 190, 191, 312
AsuHPI GGTGA 4 cut(s) 221, 256, 311, 1195
AsuII TTCGAA 1 cut(s) 1318
AvaII GGWCC 1 cut(s) 97
BaeGI GKGCMC 1 cut(s) 194
BaeI ACNNNNGTAYC 2 cut(s) 1476, 1509
BanI GGYRCC 2 cut(s) 287, 1492
BanII GRGCYC 1 cut(s) 194
BbsI GAAGAC 1 cut(s) 219
BccI CCATC 5 cut(s) 43, 964, 1089, 1285, 1398
BceAI ACGGC 2 cut(s) 291, 1507
BciT130I CCWGG 4 cut(s) 21, 166, 206, 292
BclI TGATCA 2 cut(s) 820, 1303
BcoDI GTCTC 1 cut(s) 273
BfaI CTAG 3 cut(s) 126, 180, 1508
BfmI CTRYAG 2 cut(s) 306, 1542
BfoI RGCGCY 1 cut(s) 1663
BfuAI ACCTGC 1 cut(s) 269
BglII AGATCT 1 cut(s) 345
BmcAI AGTACT 1 cut(s) 1506
Bme1390I CCNGG 4 cut(s) 21, 166, 206, 292
Bme18I GGWCC 1 cut(s) 97
BmgT120I GGNCC 4 cut(s) 97, 190, 191, 312
BmiI GGNNCC 6 cut(s) 162, 191, 192, 289, 313, 1494
BmrFI CCNGG 4 cut(s) 21, 166, 206, 292
BmrI ACTGGG 1 cut(s) 1609
BmsI GCATC 2 cut(s) 1405, 1521
BmuI ACTGGG 1 cut(s) 1609
BpiI GAAGAC 1 cut(s) 219
Bpu10I CCTNAGC 1 cut(s) 649
Bpu14I TTCGAA 1 cut(s) 1318
BpuEI CTTGAG 2 cut(s) 627, 799
BsaAI YACGTR 1 cut(s) 376
BsaBI GATNNNNATC 2 cut(s) 621, 1099
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 8 cut(s) 100, 164, 165, 205, 560, 1179, 1276, 1488
Bse118I RCCGGY 1 cut(s) 628
Bse1I ACTGG 2 cut(s) 1104, 1604
Bse3DI GCAATG 1 cut(s) 1288
Bse8I GATNNNNATC 2 cut(s) 621, 1099
BseBI CCWGG 4 cut(s) 21, 166, 206, 292
BseDI CCNNGG 8 cut(s) 100, 164, 165, 205, 560, 1179, 1276, 1488
BseGI GGATG 2 cut(s) 667, 1123
BseJI GATNNNNATC 2 cut(s) 621, 1099
BseMI GCAATG 1 cut(s) 1288
BseMII CTCAG 1 cut(s) 551
BseNI ACTGG 2 cut(s) 1104, 1604
BseRI GAGGAG 5 cut(s) 525, 680, 782, 1168, 1265
BseSI GKGCMC 1 cut(s) 194
Bsh1236I CGCG 2 cut(s) 102, 1490
BshFI GGCC 2 cut(s) 192, 314
BshNI GGYRCC 2 cut(s) 287, 1492
BsiSI CCGG 3 cut(s) 481, 629, 1167
BsmAI GTCTC 1 cut(s) 273
BsmI GAATGC 2 cut(s) 918, 1398
BsnI GGCC 2 cut(s) 192, 314
Bsp119I TTCGAA 1 cut(s) 1318
Bsp120I GGGCCC 1 cut(s) 190
Bsp1286I GDGCHC 1 cut(s) 194
Bsp1407I TGTACA 1 cut(s) 1029
BspACI CCGC 5 cut(s) 100, 102, 743, 1488, 1490
BspANI GGCC 2 cut(s) 192, 314
BspCNI CTCAG 1 cut(s) 550
BspFNI CGCG 2 cut(s) 102, 1490
BspHI TCATGA 3 cut(s) 934, 1306, 1611
BspLI GGNNCC 6 cut(s) 162, 191, 192, 289, 313, 1494
BspMAI CTGCAG 2 cut(s) 310, 1546
BspMI ACCTGC 1 cut(s) 269
BspPI GGATC 6 cut(s) 177, 265, 361, 734, 848, 1472
BspT104I TTCGAA 1 cut(s) 1318
BspT107I GGYRCC 2 cut(s) 287, 1492
BsrDI GCAATG 1 cut(s) 1288
BsrFI RCCGGY 1 cut(s) 628
BsrGI TGTACA 1 cut(s) 1029
BsrI ACTGG 2 cut(s) 1104, 1604
BssAI RCCGGY 1 cut(s) 628
BssECI CCNNGG 8 cut(s) 100, 164, 165, 205, 560, 1179, 1276, 1488
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 560
Bst2UI CCWGG 4 cut(s) 21, 166, 206, 292
Bst4CI ACNGT 1 cut(s) 1642
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 1234
BstAUI TGTACA 1 cut(s) 1029
BstBAI YACGTR 1 cut(s) 376
BstBI TTCGAA 1 cut(s) 1318
BstC8I GCNNGC 1 cut(s) 630
BstDEI CTNAG 5 cut(s) 349, 537, 649, 956, 1394
BstDSI CCRYGG 2 cut(s) 100, 1488
BstF5I GGATG 2 cut(s) 667, 1123
BstFNI CGCG 2 cut(s) 102, 1490
BstH2I RGCGCY 1 cut(s) 1663
BstHHI GCGC 1 cut(s) 1662
BstMAI GTCTC 1 cut(s) 273
BstMWI GCNNNNNNNGC 5 cut(s) 784, 787, 946, 949, 1234
BstNI CCWGG 4 cut(s) 21, 166, 206, 292
BstSCI CCNGG 4 cut(s) 19, 164, 204, 290
BstSFI CTRYAG 2 cut(s) 306, 1542
BstSLI GKGCMC 1 cut(s) 194
BstUI CGCG 2 cut(s) 102, 1490
BstV2I GAAGAC 1 cut(s) 219
BstX2I RGATCY 3 cut(s) 169, 345, 739
BstYI RGATCY 3 cut(s) 169, 345, 739
BsuRI GGCC 2 cut(s) 192, 314
BtgI CCRYGG 2 cut(s) 100, 1488
BtsCI GGATG 2 cut(s) 667, 1123
BtsI GCAGTG 1 cut(s) 303
BtsIMutI CAGTG 3 cut(s) 303, 1111, 1647
BveI ACCTGC 1 cut(s) 269
Cac8I GCNNGC 1 cut(s) 630
CaiI CAGNNNCTG 2 cut(s) 284, 1231
CciI TCATGA 3 cut(s) 934, 1306, 1611
CfoI GCGC 1 cut(s) 1662
Cfr10I RCCGGY 1 cut(s) 628
Cfr13I GGNCC 4 cut(s) 97, 190, 191, 312
Cfr42I CCGCGG 2 cut(s) 103, 1491
Csp6I GTAC 4 cut(s) 421, 1030, 1493, 1505
CviQI GTAC 4 cut(s) 421, 1030, 1493, 1505
DdeI CTNAG 5 cut(s) 349, 537, 649, 956, 1394
Eco130I CCWWGG 1 cut(s) 560
Eco24I GRGCYC 1 cut(s) 194
Eco47I GGWCC 1 cut(s) 97
Eco47III AGCGCT 1 cut(s) 1661
EcoO109I RGGNCCY 1 cut(s) 190
EcoRI GAATTC 1 cut(s) 140
EcoRII CCWGG 4 cut(s) 19, 164, 204, 290
EcoT14I CCWWGG 1 cut(s) 560
EcoT38I GRGCYC 1 cut(s) 194
ErhI CCWWGG 1 cut(s) 560
FalI AAGNNNNNCTT 2 cut(s) 332, 364
FauNDI CATATG 1 cut(s) 1333
FbaI TGATCA 2 cut(s) 820, 1303
FblI GTMKAC 2 cut(s) 567, 1005
FokI GGATG 2 cut(s) 674, 1110
FriOI GRGCYC 1 cut(s) 194
FspBI CTAG 3 cut(s) 126, 180, 1508
GlaI GCGC 1 cut(s) 1661
HaeII RGCGCY 1 cut(s) 1663
HaeIII GGCC 2 cut(s) 192, 314
HapII CCGG 3 cut(s) 481, 629, 1167
HhaI GCGC 1 cut(s) 1662
Hin1I GRCGYC 1 cut(s) 5
Hin6I GCGC 1 cut(s) 1660
HinP1I GCGC 1 cut(s) 1660
HincII GTYRAC 1 cut(s) 1465
HindII GTYRAC 1 cut(s) 1465
HindIII AAGCTT 1 cut(s) 425
HpaII CCGG 3 cut(s) 481, 629, 1167
HphI GGTGA 4 cut(s) 221, 256, 311, 1195
Hpy166II GTNNAC 5 cut(s) 568, 588, 1006, 1032, 1465
Hpy188III TCNNGA 5 cut(s) 464, 935, 986, 1307, 1612
Hpy8I GTNNAC 5 cut(s) 568, 588, 1006, 1032, 1465
Hpy99I CGWCG 1 cut(s) 1629
HpyAV CCTTC 4 cut(s) 235, 747, 933, 1314
HpyCH4III ACNGT 1 cut(s) 1642
HpyCH4IV ACGT 2 cut(s) 264, 375
HpyCH4V TGCA 6 cut(s) 308, 1120, 1418, 1528, 1534, 1544
HpyF10VI GCNNNNNNNGC 5 cut(s) 784, 787, 946, 949, 1234
HpyF3I CTNAG 5 cut(s) 349, 537, 649, 956, 1394
HpySE526I ACGT 2 cut(s) 264, 375
Hsp92I GRCGYC 1 cut(s) 5
HspAI GCGC 1 cut(s) 1660
KpnI GGTACC 1 cut(s) 1496
KroI GCCGGC 1 cut(s) 628
KroNI GCCGGC 1 cut(s) 630
Ksp22I TGATCA 2 cut(s) 820, 1303
KspI CCGCGG 2 cut(s) 103, 1491
LmnI GCTCC 4 cut(s) 667, 795, 957, 1278
LweI GCATC 2 cut(s) 1405, 1521
MaeI CTAG 3 cut(s) 126, 180, 1508
MaeII ACGT 2 cut(s) 264, 375
MaeIII GTNAC 2 cut(s) 299, 1087
MflI RGATCY 3 cut(s) 169, 345, 739
MhlI GDGCHC 1 cut(s) 194
MluCI AATT 4 cut(s) 140, 233, 1424, 1451
MlyI GAGTC 5 cut(s) 116, 1435, 1587, 1591, 1609
MmeI TCCRAC 1 cut(s) 80
MroNI GCCGGC 1 cut(s) 628
MroXI GAANNNNTTC 1 cut(s) 140
MseI TTAA 3 cut(s) 27, 45, 771
MslI CAYNNNNRTG 1 cut(s) 771
MspA1I CMGCKG 2 cut(s) 102, 1490
MspI CCGG 3 cut(s) 481, 629, 1167
MspR9I CCNGG 4 cut(s) 21, 166, 206, 292
Mva1269I GAATGC 2 cut(s) 918, 1398
MvaI CCWGG 4 cut(s) 21, 166, 206, 292
MvnI CGCG 2 cut(s) 102, 1490
MwoI GCNNNNNNNGC 5 cut(s) 784, 787, 946, 949, 1234
NaeI GCCGGC 1 cut(s) 630
NdeI CATATG 1 cut(s) 1333
NgoMIV GCCGGC 1 cut(s) 628
NlaIV GGNNCC 6 cut(s) 162, 191, 192, 289, 313, 1494
NmeAIII GCCGAG 1 cut(s) 1257
NmuCI GTSAC 1 cut(s) 299
NspV TTCGAA 1 cut(s) 1318
PagI TCATGA 3 cut(s) 934, 1306, 1611
PasI CCCWGGG 1 cut(s) 165
PcsI WCGNNNNNNNCGW 2 cut(s) 493, 1557
PctI GAATGC 2 cut(s) 918, 1398
PdiI GCCGGC 1 cut(s) 630
PdmI GAANNNNTTC 1 cut(s) 140
PfeI GAWTC 8 cut(s) 326, 434, 484, 698, 1016, 1042, 1499, 1538
PleI GAGTC 5 cut(s) 116, 1435, 1587, 1590, 1609
PpsI GAGTC 5 cut(s) 116, 1435, 1587, 1590, 1609
Ppu21I YACGTR 1 cut(s) 376
PsiI TTATAA 1 cut(s) 1068
Psp6I CCWGG 4 cut(s) 19, 164, 204, 290
PspGI CCWGG 4 cut(s) 19, 164, 204, 290
PspN4I GGNNCC 6 cut(s) 162, 191, 192, 289, 313, 1494
PspOMI GGGCCC 1 cut(s) 190
PspPI GGNCC 4 cut(s) 97, 190, 191, 312
PsrI GAACNNNNNNTAC 4 cut(s) 711, 743, 1194, 1226
PstI CTGCAG 2 cut(s) 310, 1546
PstNI CAGNNNCTG 2 cut(s) 284, 1231
PsuI RGATCY 3 cut(s) 169, 345, 739
RsaI GTAC 4 cut(s) 422, 1031, 1494, 1506
RsaNI GTAC 4 cut(s) 421, 1030, 1493, 1505
RseI CAYNNNNRTG 1 cut(s) 771
SacII CCGCGG 2 cut(s) 103, 1491
SaqAI TTAA 3 cut(s) 27, 45, 771
Sau96I GGNCC 4 cut(s) 97, 190, 191, 312
ScaI AGTACT 1 cut(s) 1506
SchI GAGTC 5 cut(s) 116, 1435, 1587, 1591, 1609
ScrFI CCNGG 4 cut(s) 21, 166, 206, 292
SduI GDGCHC 1 cut(s) 194
SfaNI GCATC 2 cut(s) 1405, 1521
SfcI CTRYAG 2 cut(s) 306, 1542
Sfr303I CCGCGG 2 cut(s) 103, 1491
SfuI TTCGAA 1 cut(s) 1318
SgrBI CCGCGG 2 cut(s) 103, 1491
SinI GGWCC 1 cut(s) 97
SmiMI CAYNNNNRTG 1 cut(s) 771
SmlI CTYRAG 2 cut(s) 642, 814
SmoI CTYRAG 2 cut(s) 642, 814
Sse9I AATT 4 cut(s) 140, 233, 1424, 1451
SsiI CCGC 5 cut(s) 100, 102, 743, 1488, 1490
SspI AATATT 1 cut(s) 865
SspMI CTAG 3 cut(s) 126, 180, 1508
StyD4I CCNGG 4 cut(s) 19, 164, 204, 290
StyI CCWWGG 1 cut(s) 560
TaaI ACNGT 1 cut(s) 1642
TaiI ACGT 2 cut(s) 267, 378
TaqI TCGA 5 cut(s) 417, 871, 1093, 1146, 1318
TaqII GACCGA 1 cut(s) 510
TasI AATT 4 cut(s) 140, 233, 1424, 1451
TatI WGTACW 3 cut(s) 420, 1029, 1504
TauI GCSGC 1 cut(s) 105
TfiI GAWTC 8 cut(s) 326, 434, 484, 698, 1016, 1042, 1499, 1538
Tru1I TTAA 3 cut(s) 27, 45, 771
Tru9I TTAA 3 cut(s) 27, 45, 771
TscAI CASTG 3 cut(s) 310, 1111, 1647
TseFI GTSAC 1 cut(s) 299
Tsp45I GTSAC 1 cut(s) 299
TspGWI ACGGA 2 cut(s) 173, 1642
TspRI CASTG 3 cut(s) 310, 1111, 1647
VpaK11BI GGWCC 1 cut(s) 97
XapI RAATTY 1 cut(s) 140
XmiI GTMKAC 2 cut(s) 567, 1005
XmnI GAANNNNTTC 1 cut(s) 140
XspI CTAG 3 cut(s) 126, 180, 1508
ZrmI AGTACT 1 cut(s) 1506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.