Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009490.1

Orthogroup ID

OG0001106

Physical Location & Seq

Genomic Coordinates Forward (+)

8599 .. 9024

Gene Structure 426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009490.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

atggcttacatttccacgttcttccttctcacagctcttctagctttgaccacacctttcatggccatggctcgacctttgatgaacaaccaatttagttcacactcgaacttcgtctccaggttaaagttggatgaagaatcatcaaactgctgggactcattgtttcagctccaggcctgtactggtgaggttatcttgttcttcttcaacggtgagacttacttgggtcatggctgttgtgaagccattaagacaatcgagcaccagtgttggcctaccttgcttggttctcttgggtttaccacgcaagagactgatatactgaaaggctattgcgacggagctgatcaaattcacaatcctccatcatcaccatcaccgcctactggaagagttattcctttggagaagtgggttccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prolamin_like

Protein Analysis

141

Amino Acids

15.7

Weight (kDa)

4.98

Isoelectric Point (pI)

48.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76750
fragaria_vesca	FvH4_2g13390 FvH4_2g13400 FvH4_2g18700 FvH4_2g18870 FvH4_2g18880 FvH4_2g18910 FvH4_5g02500
malus_domestica	MD10G1029400.v1.1
prunus_persica	Prupe.8G031900_v2.0.a1 Prupe.8G032300_v2.0.a1 Prupe.8G034300_v2.0.a1 Prupe.8G034800_v2.0.a1 Prupe.8G053400_v2.0.a1 Prupe.I003300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0274951 RchiOBHm_Chr6g0284691 RchiOBHm_Chr6g0284701 RchiOBHm_Chr7g0197601
rosa_laevigata	RLG00000003923 RLG00000012730 RLG00000012731 RLG00000013506
rosa_multiflora	Rmu_co8247145.1_g000001 Rmu_sc0007474.1_g000008 Rmu_sc0007474.1_g000014 Rmu_sc0007474.1_g000019 Rmu_sc0009490.1_g000002
rosa_roxburghii	Rroxscaffold_7G00184470 Rroxscaffold_7G00184480
rosa_rugosa	Rorug06G0086700 Rorug06G0165500 Rorug06G0165600 Rorug07G0041800.1
rosa_samantha	Rh6AG201400 Rh6AG278500 Rh6AG278600 Rh6AG278700 Rh6BG205000 Rh6BG278400 Rh6BG278500 Rh6BG278800 Rh6CG206400 Rh6CG280800 Rh6CG281000 Rh6CG281100 Rh6DG196500 Rh6DG273500 Rh6DG273600 Rh6DG273700 Rh7AG166200 Rh7BG168300 Rh7CG174600 Rh7DG167900
rosa_wichuraiana	Rw6G017520 Rw6G023930 Rw6G023950 Rw6G023960 Rw7G014470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	383
AcoI	YGGCCR	1 cut(s)	63
AcsI	RAATTY	1 cut(s)	354
AfaI	GTAC	1 cut(s)	184
AfiI	CCNNNNNNNGG	1 cut(s)	389
AgsI	TTSAA	1 cut(s)	211
AjnI	CCWGG	2 cut(s)	119, 174
AloI	GAACNNNNNNTCC	2 cut(s)	101, 133
AluBI	AGCT	4 cut(s)	35, 44, 172, 347
AluI	AGCT	4 cut(s)	35, 44, 172, 347
Alw21I	GWGCWC	1 cut(s)	267
Alw26I	GTCTC	3 cut(s)	121, 212, 308
AoxI	GGCC	3 cut(s)	63, 177, 275
ApoI	RAATTY	1 cut(s)	354
AsuHPI	GGTGA	4 cut(s)	200, 227, 366, 372
BalI	TGGCCA	1 cut(s)	65
Bbv12I	GWGCWC	1 cut(s)	267
BccI	CCATC	2 cut(s)	376, 385
BciT130I	CCWGG	2 cut(s)	121, 176
BclI	TGATCA	1 cut(s)	349
BcoDI	GTCTC	3 cut(s)	121, 212, 308
BfaI	CTAG	1 cut(s)	41
Bme1390I	CCNGG	2 cut(s)	121, 176
BmiI	GGNNCC	1 cut(s)	420
BmrFI	CCNGG	2 cut(s)	121, 176
BpmI	CTGGAG	2 cut(s)	103, 158
BsaJI	CCNNGG	1 cut(s)	66
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bsc4I	CCNNNNNNNGG	1 cut(s)	389
Bse1I	ACTGG	3 cut(s)	190, 268, 394
BseBI	CCWGG	2 cut(s)	121, 176
BseDI	CCNNGG	1 cut(s)	66
BseGI	GGATG	1 cut(s)	139
BseLI	CCNNNNNNNGG	1 cut(s)	389
BseNI	ACTGG	3 cut(s)	190, 268, 394
BseYI	CCCAGC	1 cut(s)	153
BshFI	GGCC	3 cut(s)	65, 179, 277
BsiHKAI	GWGCWC	1 cut(s)	267
BslFI	GGGAC	1 cut(s)	170
BslI	CCNNNNNNNGG	1 cut(s)	389
BsmAI	GTCTC	3 cut(s)	121, 212, 308
BsmBI	CGTCTC	1 cut(s)	121
BsmFI	GGGAC	1 cut(s)	170
BsnI	GGCC	3 cut(s)	65, 179, 277
Bsp1286I	GDGCHC	1 cut(s)	267
Bsp143I	GATC	1 cut(s)	349
Bsp19I	CCATGG	1 cut(s)	66
BspACI	CCGC	1 cut(s)	383
BspANI	GGCC	3 cut(s)	65, 179, 277
BspLI	GGNNCC	1 cut(s)	420
BspQI	GCTCTTC	1 cut(s)	42
BsrI	ACTGG	3 cut(s)	190, 268, 394
BssECI	CCNNGG	1 cut(s)	66
BssMI	GATC	1 cut(s)	349
BssT1I	CCWWGG	1 cut(s)	66
Bst2UI	CCWGG	2 cut(s)	121, 176
Bst4CI	ACNGT	1 cut(s)	215
Bst6I	CTCTTC	2 cut(s)	42, 388
BstDSI	CCRYGG	1 cut(s)	66
BstF5I	GGATG	1 cut(s)	139
BstKTI	GATC	1 cut(s)	352
BstMAI	GTCTC	3 cut(s)	121, 212, 308
BstMBI	GATC	1 cut(s)	349
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 283
BstNI	CCWGG	2 cut(s)	121, 176
BstSCI	CCNGG	2 cut(s)	119, 174
BsuRI	GGCC	3 cut(s)	65, 179, 277
BtgI	CCRYGG	1 cut(s)	66
BtsCI	GGATG	1 cut(s)	139
BtsIMutI	CAGTG	1 cut(s)	275
Csp6I	GTAC	1 cut(s)	183
CviAII	CATG	3 cut(s)	61, 67, 233
CviQI	GTAC	1 cut(s)	183
DpnI	GATC	1 cut(s)	351
DpnII	GATC	1 cut(s)	349
EaeI	YGGCCR	1 cut(s)	63
Eam1104I	CTCTTC	2 cut(s)	42, 388
EarI	CTCTTC	2 cut(s)	42, 388
Eco130I	CCWWGG	1 cut(s)	66
Eco147I	AGGCCT	1 cut(s)	179
EcoRII	CCWGG	2 cut(s)	119, 174
EcoT14I	CCWWGG	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	66
Esp3I	CGTCTC	1 cut(s)	121
FaeI	CATG	3 cut(s)	64, 70, 236
FaiI	YATR	4 cut(s)	62, 68, 234, 323
FaqI	GGGAC	1 cut(s)	170
FatI	CATG	3 cut(s)	60, 66, 232
FbaI	TGATCA	1 cut(s)	349
FokI	GGATG	1 cut(s)	146
FspBI	CTAG	1 cut(s)	41
GsaI	CCCAGC	1 cut(s)	157
GsuI	CTGGAG	2 cut(s)	103, 158
HaeIII	GGCC	3 cut(s)	65, 179, 277
Hin1II	CATG	3 cut(s)	64, 70, 236
HinfI	GANTC	2 cut(s)	140, 158
HphI	GGTGA	4 cut(s)	200, 227, 366, 372
Hpy166II	GTNNAC	2 cut(s)	101, 303
Hpy8I	GTNNAC	2 cut(s)	101, 303
Hpy99I	CGWCG	1 cut(s)	344
HpyAV	CCTTC	1 cut(s)	35
HpyCH4III	ACNGT	1 cut(s)	215
HpyCH4IV	ACGT	1 cut(s)	17
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 283
HpySE526I	ACGT	1 cut(s)	17
Hsp92II	CATG	3 cut(s)	64, 70, 236
Ksp22I	TGATCA	1 cut(s)	349
Kzo9I	GATC	1 cut(s)	349
LguI	GCTCTTC	1 cut(s)	42
LmnI	GCTCC	2 cut(s)	177, 344
LpnPI	CCDG	9 cut(s)	106, 133, 139, 161, 171, 188, 193, 281, 375
MaeI	CTAG	1 cut(s)	41
MaeII	ACGT	1 cut(s)	17
MalI	GATC	1 cut(s)	351
MboI	GATC	1 cut(s)	349
MboII	GAAGA	6 cut(s)	13, 29, 149, 196, 199, 405
MhlI	GDGCHC	1 cut(s)	267
MlsI	TGGCCA	1 cut(s)	65
MluCI	AATT	2 cut(s)	92, 354
MluNI	TGGCCA	1 cut(s)	65
MlyI	GAGTC	1 cut(s)	152
MmeI	TCCRAC	1 cut(s)	111
MnlI	CCTC	2 cut(s)	184, 375
Mox20I	TGGCCA	1 cut(s)	65
MscI	TGGCCA	1 cut(s)	65
MseI	TTAA	2 cut(s)	125, 252
MslI	CAYNNNNRTG	1 cut(s)	65
Msp20I	TGGCCA	1 cut(s)	65
MspR9I	CCNGG	2 cut(s)	121, 176
MvaI	CCWGG	2 cut(s)	121, 176
MwoI	GCNNNNNNNGC	2 cut(s)	41, 283
NcoI	CCATGG	1 cut(s)	66
NdeII	GATC	1 cut(s)	349
NlaIII	CATG	3 cut(s)	64, 70, 236
NlaIV	GGNNCC	1 cut(s)	420
PceI	AGGCCT	1 cut(s)	179
PciSI	GCTCTTC	1 cut(s)	42
PfeI	GAWTC	1 cut(s)	140
PleI	GAGTC	1 cut(s)	152
PpsI	GAGTC	1 cut(s)	152
Psp6I	CCWGG	2 cut(s)	119, 174
PspFI	CCCAGC	1 cut(s)	153
PspGI	CCWGG	2 cut(s)	119, 174
PspN4I	GGNNCC	1 cut(s)	420
RsaI	GTAC	1 cut(s)	184
RsaNI	GTAC	1 cut(s)	183
RseI	CAYNNNNRTG	1 cut(s)	65
SapI	GCTCTTC	1 cut(s)	42
SaqAI	TTAA	2 cut(s)	125, 252
Sau3AI	GATC	1 cut(s)	349
SchI	GAGTC	1 cut(s)	152
ScrFI	CCNGG	2 cut(s)	121, 176
SduI	GDGCHC	1 cut(s)	267
SmiMI	CAYNNNNRTG	1 cut(s)	65
Sse9I	AATT	2 cut(s)	92, 354
SseBI	AGGCCT	1 cut(s)	179
SsiI	CCGC	1 cut(s)	383
SspMI	CTAG	1 cut(s)	41
StuI	AGGCCT	1 cut(s)	179
StyD4I	CCNGG	2 cut(s)	119, 174
StyI	CCWWGG	1 cut(s)	66
TaaI	ACNGT	1 cut(s)	215
TaiI	ACGT	1 cut(s)	20
TaqI	TCGA	3 cut(s)	73, 107, 261
TasI	AATT	2 cut(s)	92, 354
TatI	WGTACW	1 cut(s)	182
TfiI	GAWTC	1 cut(s)	140
Tru1I	TTAA	2 cut(s)	125, 252
Tru9I	TTAA	2 cut(s)	125, 252
TscAI	CASTG	1 cut(s)	275
TspDTI	ATGAA	3 cut(s)	49, 98, 150
TspGWI	ACGGA	1 cut(s)	357
TspRI	CASTG	1 cut(s)	275
XapI	RAATTY	1 cut(s)	354
XcmI	CCANNNNNNNNNTGG	3 cut(s)	58, 127, 182
XspI	CTAG	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.