Rorug06G0165600
NAC Family

NAC domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
23799518 .. 23802440
2923 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0165600.1

Sequence Viewer

Length: 720 bp
ATGAGTGAGTCGGCGAAGGTTTTGAAAATACCTTGGTTGCTGTTTTGGAATGTATTTTCAAAACAAGATATGGTGCTTCTCTCATCCCACAGTATATGGGGTATAATCTTCACTAATGAAGAAGAAACATTTGTATATAGAATGTCTTATGGGTGTTCTAGATTAGACTATAAAGCATTTCTCTTTGCTTTCCTTCAGCCTTTCATACAAGTTGGTCTGACGGCAGATTCTCAGAAAGTCAAATCTTTAGCTTGTAAAACGGTTACTCGCCTTCTCGAAAGTGTGAATGGAGATGTTGTTTCTGCACATCTTATAATTGACAACAATATATATCCTCTATTGCTTGATTGCCTCATTAATGGAAATGAACAAGTTACAACTGTAGCAACTGAAGCAATACAGAATATAGCTGGTAGTCCAGCAGGCATAGATATTGTTTTCCCAGCTAATACCAATGAAGCTACACATCTTGGAAAGTTGGCATCTGAATGCTCATCACTGGGACGGGTTCAAATTTTGGCTTTAATTGTGAAGCTATTCTCTGTCTCCCCTATATCAGAAGTTGAACTAGGAGTGTTGAAGAAATTAAAAGGAGTCATCCTGAAGAAATTGAAAACTGCAATAGCATTCGAGATTGCAAGAATTATATGGAATGGCTATCTTCTCTTCAAAACTTTGATGCCTCAATTAGTTGATATCTCTGGAGGATTATCCGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

239

Amino Acids

26.31

Weight (kDa)

7.64

Isoelectric Point (pI)

36.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 314
AcsI RAATTY 1 cut(s) 513
AcuI CTGAAG 3 cut(s) 179, 411, 623
AgsI TTSAA 7 cut(s) 25, 60, 512, 566, 580, 613, 670
AluBI AGCT 5 cut(s) 251, 410, 446, 461, 535
AluI AGCT 5 cut(s) 251, 410, 446, 461, 535
Alw26I GTCTC 1 cut(s) 550
ApoI RAATTY 1 cut(s) 513
AseI ATTAAT 1 cut(s) 357
Asp700I GAANNNNTTC 1 cut(s) 536
BceAI ACGGC 1 cut(s) 237
BcoDI GTCTC 1 cut(s) 550
BfaI CTAG 2 cut(s) 159, 569
BfmI CTRYAG 1 cut(s) 381
BmrI ACTGGG 1 cut(s) 509
BmsI GCATC 2 cut(s) 491, 669
BmuI ACTGGG 1 cut(s) 509
BsaJI CCNNGG 1 cut(s) 32
BsaXI ACNNNNNCTCC 2 cut(s) 282, 312
Bse1I ACTGG 1 cut(s) 504
BseDI CCNNGG 1 cut(s) 32
BseGI GGATG 2 cut(s) 83, 597
BseMII CTCAG 1 cut(s) 245
BseNI ACTGG 1 cut(s) 504
BseYI CCCAGC 1 cut(s) 442
BsgI GTGCAG 1 cut(s) 288
BslFI GGGAC 1 cut(s) 516
BsmAI GTCTC 1 cut(s) 550
BsmFI GGGAC 1 cut(s) 516
BsmI GAATGC 2 cut(s) 494, 626
BspCNI CTCAG 1 cut(s) 244
BsrI ACTGG 1 cut(s) 504
BssECI CCNNGG 1 cut(s) 32
BssT1I CCWWGG 1 cut(s) 32
Bst4CI ACNGT 3 cut(s) 92, 262, 382
Bst6I CTCTTC 1 cut(s) 671
BstC8I GCNNGC 1 cut(s) 424
BstDEI CTNAG 1 cut(s) 231
BstF5I GGATG 2 cut(s) 83, 597
BstMAI GTCTC 1 cut(s) 550
BstMWI GCNNNNNNNGC 1 cut(s) 392
BstSFI CTRYAG 1 cut(s) 381
BtsCI GGATG 2 cut(s) 83, 597
BtsIMutI CAGTG 1 cut(s) 497
Cac8I GCNNGC 1 cut(s) 424
CviJI RGCY 8 cut(s) 199, 251, 410, 446, 461, 521, 535, 657
CviKI_1 RGCY 8 cut(s) 199, 251, 410, 446, 461, 521, 535, 657
DdeI CTNAG 1 cut(s) 231
Eam1104I CTCTTC 1 cut(s) 671
EarI CTCTTC 1 cut(s) 671
Eco130I CCWWGG 1 cut(s) 32
Eco32I GATATC 1 cut(s) 697
Eco57I CTGAAG 3 cut(s) 179, 411, 623
EcoRV GATATC 1 cut(s) 697
EcoT14I CCWWGG 1 cut(s) 32
ErhI CCWWGG 1 cut(s) 32
FaqI GGGAC 1 cut(s) 516
FokI GGATG 2 cut(s) 70, 584
FspBI CTAG 2 cut(s) 159, 569
GsaI CCCAGC 1 cut(s) 446
HinfI GANTC 3 cut(s) 8, 227, 594
Hpy188I TCNGA 4 cut(s) 219, 234, 487, 559
Hpy188III TCNNGA 5 cut(s) 159, 275, 601, 631, 702
HpyAV CCTTC 3 cut(s) 10, 203, 281
HpyCH4III ACNGT 3 cut(s) 92, 262, 382
HpyCH4V TGCA 3 cut(s) 305, 620, 638
HpyF10VI GCNNNNNNNGC 1 cut(s) 392
HpyF3I CTNAG 1 cut(s) 231
LpnPI CCDG 7 cut(s) 396, 408, 432, 456, 485, 614, 687
LweI GCATC 2 cut(s) 491, 669
MaeI CTAG 2 cut(s) 159, 569
MaeIII GTNAC 2 cut(s) 262, 373
MboII GAAGA 7 cut(s) 100, 131, 134, 592, 616, 653, 658
MluCI AATT 7 cut(s) 315, 513, 525, 584, 608, 642, 686
MlyI GAGTC 2 cut(s) 17, 603
MnlI CCTC 4 cut(s) 345, 362, 693, 698
MroXI GAANNNNTTC 1 cut(s) 536
MseI TTAA 3 cut(s) 357, 524, 587
MslI CAYNNNNRTG 1 cut(s) 487
Mva1269I GAATGC 2 cut(s) 494, 626
MwoI GCNNNNNNNGC 1 cut(s) 392
PctI GAATGC 2 cut(s) 494, 626
PdmI GAANNNNTTC 1 cut(s) 536
PfeI GAWTC 1 cut(s) 227
PleI GAGTC 2 cut(s) 16, 602
PpsI GAGTC 2 cut(s) 16, 602
PshBI ATTAAT 1 cut(s) 357
PsiI TTATAA 1 cut(s) 314
PspFI CCCAGC 1 cut(s) 442
RseI CAYNNNNRTG 1 cut(s) 487
SaqAI TTAA 3 cut(s) 357, 524, 587
SchI GAGTC 2 cut(s) 17, 603
SetI ASST 7 cut(s) 21, 34, 253, 412, 448, 463, 537
SfaNI GCATC 2 cut(s) 491, 669
SfcI CTRYAG 1 cut(s) 381
SmiMI CAYNNNNRTG 1 cut(s) 487
Sse9I AATT 7 cut(s) 315, 513, 525, 584, 608, 642, 686
SspMI CTAG 2 cut(s) 159, 569
StyI CCWWGG 1 cut(s) 32
TaaI ACNGT 3 cut(s) 92, 262, 382
TaqI TCGA 2 cut(s) 276, 630
TasI AATT 7 cut(s) 315, 513, 525, 584, 608, 642, 686
TfiI GAWTC 1 cut(s) 227
Tru1I TTAA 3 cut(s) 357, 524, 587
Tru9I TTAA 3 cut(s) 357, 524, 587
TscAI CASTG 1 cut(s) 504
TspDTI ATGAA 4 cut(s) 132, 193, 381, 471
TspGWI ACGGA 1 cut(s) 703
TspRI CASTG 1 cut(s) 504
VspI ATTAAT 1 cut(s) 357
XapI RAATTY 1 cut(s) 513
XbaI TCTAGA 1 cut(s) 158
XmnI GAANNNNTTC 1 cut(s) 536
XspI CTAG 2 cut(s) 159, 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.