Rh6DG273600

No apical meristem (NAM) protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0001106
Physical Location & Seq
Forward (+)
46793028 .. 46795023
1996 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG273600.1

Sequence Viewer

Length: 1722 bp
ATGGCGTCTTCATGTGTTCCTGGTCTTAATCTTCCATCGGGTTTTAAGTTTCTTCCAACCAACGAAGAACTATTGGGATATTATCTTCTGAACAAGGTCCGCGGCAAACCATTCAAGTATGACTCTAGGGTTATGAATGAGTTCAATCTTTACAAGACGGAACCCTGGGATCTTTGGACTAGGTTTGGCGGCCCAAGACTGAACCAGGGTGAAGACCTCTTTATCTTTACCGAATTGAAGAAGGTGAATGATAATGGATCAAACGTGTCTCGCACGGCAGGTTCTGGCACCTGGAAAGGTGACACTGCAGGGGCCAAAGTATATGATTCAGAGGATAAGAAGAAGATCTTAGGATCGTGGAAAAGGTTTCATTACGTGCCGAATGAACCAAATGAGAATGGTTCTTGGATTATGTTCGAGTACAAGCTTGATGATTCACTGATCCCCAAATCTTGTATTGGTCGTGATCTTGTGCTGTGCCGGATTCGGAAAGACCGAAAGAGAAAGTTGATTGAAGATCAGATGAATGACACTCCTCAGTCCTCCCGTAGAAAGGTTCCAAGGGTAGACAAACATGATGTCATGTTTACTCATAGGAAACATATTATGAATGATGATACTAATCTGCCGGCTTCTTTTACTCAAGGCTTAGGTAGTGAGGATGAGGAGCAACAATCACAACAACGACAACAACTTGATTCTAACAAGAGCTTTGAGGAACAAGAAATACAACAAGAAGATCCGCAACCGAGAAGGCAACATTATTCTCATTTTAATGAGCGGCAGCAGCAGCTCCTCGTCAATGATCTGATGATCTCAAGTGATCAATACATATTTGGAGAAACTTATGATCCTATGAATATTGTTCGACCTAACCCTAATGCTGTCATCAGTCATCAGCCGAACAATCTTGGCATTCCTTCTTATTTTCATGAGCAGCAGCAGCAGCTCCTTAGTGATGATCTGATGGTTTCTTGTCATCTTGACAAATTTCAGAGGGTAGACAAACATGAATCTTATGTTATGTACACTTGCGAGAATCAGATTTTGAATGATGAAGATTATAACCTCATGGCTTCATCTGTTACTCGATGGTTATCCAGTGATGAGGAAAAGCAACATCCACAACAACAACAAGAAGTCGAACCTAACAATATGTGTGCCGGACAGCACTCCTCGGTGAGCTTTGAGCGTGAGGAACAACAACTACAACAACAAGATCAGCAACTGCTGCCCTCTACCTCTGATTTTCATGAGAAACAGCAACAGCTCCTCGGCAATGATCTGATGGTTTGTAATGATCATGACATATTTCGAAGGGCAGAAACATACGAACCTATGAATGTTCAACCTAACCCAGATACCCTCATCAGTCATCAGCCTAACCATCTTAGCATTCCCATTGACATAGATGCAATCCAATTTGATGATTATTGGACGCCGAATGAATTACTTTTGGTTGACACCAATAATGATCCTTATACCGCGGCACCTGATTCAGTACTAGACACATCAAAGCCGTTGCAGATGCAAGATTCTGCAGCTAACGATAACAACGAGATGATGAGAATTGATGAGAGTCATGATCAGACTCAACTGGGTTTCCCTCAAGACTCAAACACGACGGAACTTTCTGACAGTGCTGCCCATAATGAAGCGCTCAACTTTAGCACCCTTGATGACAATGTGTTCAATGCAATTGATCTTGACAACCTTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

573

Amino Acids

66.43

Weight (kDa)

4.73

Isoelectric Point (pI)

50.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 12 - 143 1.1e-23 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1065
Acc36I ACCTGC 1 cut(s) 269
AccB1I GGYRCC 2 cut(s) 287, 1489
AccBSI CCGCTC 1 cut(s) 781
AccI GTMKAC 2 cut(s) 567, 1002
AccII CGCG 2 cut(s) 102, 1487
AciI CCGC 7 cut(s) 100, 102, 189, 743, 781, 1485, 1487
AclWI GGATC 7 cut(s) 177, 265, 361, 436, 734, 845, 1469
AcsI RAATTY 1 cut(s) 989
AcyI GRCGYC 2 cut(s) 5, 1439
AfaI GTAC 3 cut(s) 422, 1028, 1503
AfeI AGCGCT 1 cut(s) 1659
AfiI CCNNNNNNNGG 1 cut(s) 553
AflIII ACRYGT 1 cut(s) 264
AgsI TTSAA 7 cut(s) 115, 145, 238, 515, 1051, 1349, 1693
AjnI CCWGG 4 cut(s) 19, 164, 204, 290
AluBI AGCT 7 cut(s) 427, 711, 793, 949, 1185, 1270, 1544
AluI AGCT 7 cut(s) 427, 711, 793, 949, 1185, 1270, 1544
Alw26I GTCTC 1 cut(s) 273
AlwI GGATC 7 cut(s) 177, 265, 361, 436, 734, 845, 1469
AlwNI CAGNNNCTG 2 cut(s) 284, 1228
Aor51HI AGCGCT 1 cut(s) 1659
AoxI GGCC 2 cut(s) 190, 312
ApoI RAATTY 1 cut(s) 989
ArsI GACNNNNNNTTYG 2 cut(s) 564, 596
Asp700I GAANNNNTTC 1 cut(s) 140
AspLEI GCGC 1 cut(s) 1660
AspS9I GGNCC 3 cut(s) 97, 191, 312
AsuHPI GGTGA 4 cut(s) 221, 256, 311, 1192
AsuII TTCGAA 1 cut(s) 1315
AvaII GGWCC 1 cut(s) 97
BanI GGYRCC 2 cut(s) 287, 1489
BbsI GAAGAC 1 cut(s) 219
BccI CCATC 5 cut(s) 43, 961, 1086, 1282, 1395
BceAI ACGGC 2 cut(s) 291, 1504
BciT130I CCWGG 4 cut(s) 21, 166, 206, 292
BclI TGATCA 3 cut(s) 823, 1300, 1585
BcoDI GTCTC 1 cut(s) 273
BfaI CTAG 3 cut(s) 126, 180, 1505
BfmI CTRYAG 2 cut(s) 306, 1539
BfoI RGCGCY 1 cut(s) 1661
BfuAI ACCTGC 1 cut(s) 269
BglII AGATCT 1 cut(s) 345
BmcAI AGTACT 1 cut(s) 1503
Bme1390I CCNGG 4 cut(s) 21, 166, 206, 292
Bme18I GGWCC 1 cut(s) 97
BmgT120I GGNCC 3 cut(s) 97, 191, 312
BmiI GGNNCC 5 cut(s) 162, 289, 313, 558, 1491
BmrFI CCNGG 4 cut(s) 21, 166, 206, 292
BmrI ACTGGG 1 cut(s) 1607
BmsI GCATC 2 cut(s) 1402, 1518
BmuI ACTGGG 1 cut(s) 1607
BpiI GAAGAC 1 cut(s) 219
Bpu10I CCTNAGC 1 cut(s) 649
Bpu14I TTCGAA 1 cut(s) 1315
BpuEI CTTGAG 3 cut(s) 627, 802, 1593
BsaAI YACGTR 1 cut(s) 376
BsaBI GATNNNNATC 2 cut(s) 621, 1096
BsaHI GRCGYC 2 cut(s) 5, 1439
BsaJI CCNNGG 8 cut(s) 100, 164, 165, 205, 560, 1176, 1273, 1485
Bsc4I CCNNNNNNNGG 1 cut(s) 553
Bse118I RCCGGY 1 cut(s) 628
Bse1I ACTGG 2 cut(s) 1101, 1602
Bse3DI GCAATG 1 cut(s) 1285
Bse8I GATNNNNATC 2 cut(s) 621, 1096
BseBI CCWGG 4 cut(s) 21, 166, 206, 292
BseDI CCNNGG 8 cut(s) 100, 164, 165, 205, 560, 1176, 1273, 1485
BseGI GGATG 2 cut(s) 667, 1120
BseJI GATNNNNATC 2 cut(s) 621, 1096
BseLI CCNNNNNNNGG 1 cut(s) 553
BseMI GCAATG 1 cut(s) 1285
BseMII CTCAG 1 cut(s) 551
BseNI ACTGG 2 cut(s) 1101, 1602
BseRI GAGGAG 5 cut(s) 525, 680, 785, 1165, 1262
Bsh1236I CGCG 2 cut(s) 102, 1487
BshFI GGCC 2 cut(s) 192, 314
BshNI GGYRCC 2 cut(s) 287, 1489
BsiSI CCGG 3 cut(s) 481, 629, 1164
BslI CCNNNNNNNGG 1 cut(s) 553
BsmAI GTCTC 1 cut(s) 273
BsmI GAATGC 2 cut(s) 915, 1395
BsnI GGCC 2 cut(s) 192, 314
Bsp119I TTCGAA 1 cut(s) 1315
Bsp1407I TGTACA 1 cut(s) 1026
BspACI CCGC 7 cut(s) 100, 102, 189, 743, 781, 1485, 1487
BspANI GGCC 2 cut(s) 192, 314
BspCNI CTCAG 1 cut(s) 550
BspFNI CGCG 2 cut(s) 102, 1487
BspHI TCATGA 4 cut(s) 931, 1252, 1303, 1582
BspLI GGNNCC 5 cut(s) 162, 289, 313, 558, 1491
BspMAI CTGCAG 2 cut(s) 310, 1543
BspMI ACCTGC 1 cut(s) 269
BspPI GGATC 7 cut(s) 177, 265, 361, 436, 734, 845, 1469
BspT104I TTCGAA 1 cut(s) 1315
BspT107I GGYRCC 2 cut(s) 287, 1489
BsrBI CCGCTC 1 cut(s) 781
BsrDI GCAATG 1 cut(s) 1285
BsrFI RCCGGY 1 cut(s) 628
BsrGI TGTACA 1 cut(s) 1026
BsrI ACTGG 2 cut(s) 1101, 1602
BssAI RCCGGY 1 cut(s) 628
BssECI CCNNGG 8 cut(s) 100, 164, 165, 205, 560, 1176, 1273, 1485
BssNI GRCGYC 2 cut(s) 5, 1439
BssT1I CCWWGG 1 cut(s) 560
Bst2UI CCWGG 4 cut(s) 21, 166, 206, 292
Bst4CI ACNGT 1 cut(s) 1640
BstACI GRCGYC 2 cut(s) 5, 1439
BstAPI GCANNNNNTGC 1 cut(s) 1231
BstAUI TGTACA 1 cut(s) 1026
BstBAI YACGTR 1 cut(s) 376
BstBI TTCGAA 1 cut(s) 1315
BstC8I GCNNGC 1 cut(s) 630
BstDEI CTNAG 5 cut(s) 349, 537, 649, 953, 1391
BstDSI CCRYGG 2 cut(s) 100, 1485
BstF5I GGATG 2 cut(s) 667, 1120
BstFNI CGCG 2 cut(s) 102, 1487
BstH2I RGCGCY 1 cut(s) 1661
BstHHI GCGC 1 cut(s) 1660
BstMAI GTCTC 1 cut(s) 273
BstMWI GCNNNNNNNGC 5 cut(s) 787, 790, 943, 946, 1231
BstNI CCWGG 4 cut(s) 21, 166, 206, 292
BstSCI CCNGG 4 cut(s) 19, 164, 204, 290
BstSFI CTRYAG 2 cut(s) 306, 1539
BstUI CGCG 2 cut(s) 102, 1487
BstV2I GAAGAC 1 cut(s) 219
BstX2I RGATCY 3 cut(s) 169, 345, 739
BstYI RGATCY 3 cut(s) 169, 345, 739
BsuRI GGCC 2 cut(s) 192, 314
BtgI CCRYGG 2 cut(s) 100, 1485
BtsCI GGATG 2 cut(s) 667, 1120
BtsI GCAGTG 1 cut(s) 303
BtsIMutI CAGTG 4 cut(s) 303, 437, 1108, 1645
BveI ACCTGC 1 cut(s) 269
Cac8I GCNNGC 1 cut(s) 630
CaiI CAGNNNCTG 2 cut(s) 284, 1228
CciI TCATGA 4 cut(s) 931, 1252, 1303, 1582
CfoI GCGC 1 cut(s) 1660
Cfr10I RCCGGY 1 cut(s) 628
Cfr13I GGNCC 3 cut(s) 97, 191, 312
Cfr42I CCGCGG 2 cut(s) 103, 1488
CseI GACGC 1 cut(s) 1447
Csp6I GTAC 3 cut(s) 421, 1027, 1502
CviAII CATG 9 cut(s) 12, 575, 583, 932, 1010, 1072, 1253, 1304, 1583
CviQI GTAC 3 cut(s) 421, 1027, 1502
DdeI CTNAG 5 cut(s) 349, 537, 649, 953, 1391
Eco130I CCWWGG 1 cut(s) 560
Eco47I GGWCC 1 cut(s) 97
Eco47III AGCGCT 1 cut(s) 1659
EcoRII CCWGG 4 cut(s) 19, 164, 204, 290
EcoT14I CCWWGG 1 cut(s) 560
ErhI CCWWGG 1 cut(s) 560
FaeI CATG 9 cut(s) 15, 578, 586, 935, 1013, 1075, 1256, 1307, 1586
FalI AAGNNNNNCTT 2 cut(s) 332, 364
FatI CATG 9 cut(s) 11, 574, 582, 931, 1009, 1071, 1252, 1303, 1582
FbaI TGATCA 3 cut(s) 823, 1300, 1585
FblI GTMKAC 2 cut(s) 567, 1002
FokI GGATG 2 cut(s) 674, 1107
FspBI CTAG 3 cut(s) 126, 180, 1505
GlaI GCGC 1 cut(s) 1659
HaeII RGCGCY 1 cut(s) 1661
HaeIII GGCC 2 cut(s) 192, 314
HapII CCGG 3 cut(s) 481, 629, 1164
HgaI GACGC 1 cut(s) 1447
HhaI GCGC 1 cut(s) 1660
Hin1I GRCGYC 2 cut(s) 5, 1439
Hin1II CATG 9 cut(s) 15, 578, 586, 935, 1013, 1075, 1256, 1307, 1586
Hin6I GCGC 1 cut(s) 1658
HinP1I GCGC 1 cut(s) 1658
HincII GTYRAC 1 cut(s) 1462
HindII GTYRAC 1 cut(s) 1462
HindIII AAGCTT 1 cut(s) 425
HpaII CCGG 3 cut(s) 481, 629, 1164
HphI GGTGA 4 cut(s) 221, 256, 311, 1192
Hpy166II GTNNAC 5 cut(s) 568, 588, 1003, 1029, 1462
Hpy188III TCNNGA 8 cut(s) 464, 932, 983, 1253, 1304, 1583, 1610, 1706
Hpy8I GTNNAC 5 cut(s) 568, 588, 1003, 1029, 1462
Hpy99I CGWCG 1 cut(s) 1627
HpyAV CCTTC 4 cut(s) 235, 747, 930, 1311
HpyCH4III ACNGT 1 cut(s) 1640
HpyCH4IV ACGT 2 cut(s) 264, 375
HpyCH4V TGCA 6 cut(s) 308, 1415, 1525, 1531, 1541, 1697
HpyF10VI GCNNNNNNNGC 5 cut(s) 787, 790, 943, 946, 1231
HpyF3I CTNAG 5 cut(s) 349, 537, 649, 953, 1391
HpySE526I ACGT 2 cut(s) 264, 375
Hsp92I GRCGYC 2 cut(s) 5, 1439
Hsp92II CATG 9 cut(s) 15, 578, 586, 935, 1013, 1075, 1256, 1307, 1586
HspAI GCGC 1 cut(s) 1658
KroI GCCGGC 1 cut(s) 628
KroNI GCCGGC 1 cut(s) 630
Ksp22I TGATCA 3 cut(s) 823, 1300, 1585
KspI CCGCGG 2 cut(s) 103, 1488
LmnI GCTCC 4 cut(s) 667, 798, 954, 1275
LweI GCATC 2 cut(s) 1402, 1518
MaeI CTAG 3 cut(s) 126, 180, 1505
MaeII ACGT 2 cut(s) 264, 375
MaeIII GTNAC 2 cut(s) 299, 1084
MbiI CCGCTC 1 cut(s) 781
MfeI CAATTG 1 cut(s) 1698
MflI RGATCY 3 cut(s) 169, 345, 739
MluCI AATT 6 cut(s) 233, 989, 1421, 1448, 1569, 1698
MlyI GAGTC 4 cut(s) 116, 1585, 1588, 1607
MmeI TCCRAC 1 cut(s) 80
MroNI GCCGGC 1 cut(s) 628
MroXI GAANNNNTTC 1 cut(s) 140
MseI TTAA 3 cut(s) 27, 45, 774
MslI CAYNNNNRTG 1 cut(s) 774
MspA1I CMGCKG 2 cut(s) 102, 1487
MspI CCGG 3 cut(s) 481, 629, 1164
MspR9I CCNGG 4 cut(s) 21, 166, 206, 292
MunI CAATTG 1 cut(s) 1698
Mva1269I GAATGC 2 cut(s) 915, 1395
MvaI CCWGG 4 cut(s) 21, 166, 206, 292
MvnI CGCG 2 cut(s) 102, 1487
MwoI GCNNNNNNNGC 5 cut(s) 787, 790, 943, 946, 1231
NaeI GCCGGC 1 cut(s) 630
NgoMIV GCCGGC 1 cut(s) 628
NlaIII CATG 9 cut(s) 15, 578, 586, 935, 1013, 1075, 1256, 1307, 1586
NlaIV GGNNCC 5 cut(s) 162, 289, 313, 558, 1491
NmeAIII GCCGAG 1 cut(s) 1254
NmuCI GTSAC 1 cut(s) 299
NspV TTCGAA 1 cut(s) 1315
PagI TCATGA 4 cut(s) 931, 1252, 1303, 1582
PasI CCCWGGG 1 cut(s) 165
PcsI WCGNNNNNNNCGW 2 cut(s) 493, 1554
PctI GAATGC 2 cut(s) 915, 1395
PdiI GCCGGC 1 cut(s) 630
PdmI GAANNNNTTC 1 cut(s) 140
PfeI GAWTC 8 cut(s) 326, 434, 484, 698, 1013, 1039, 1496, 1535
PleI GAGTC 4 cut(s) 116, 1585, 1587, 1607
PpsI GAGTC 4 cut(s) 116, 1585, 1587, 1607
Ppu21I YACGTR 1 cut(s) 376
PsiI TTATAA 1 cut(s) 1065
Psp6I CCWGG 4 cut(s) 19, 164, 204, 290
PspGI CCWGG 4 cut(s) 19, 164, 204, 290
PspN4I GGNNCC 5 cut(s) 162, 289, 313, 558, 1491
PspPI GGNCC 3 cut(s) 97, 191, 312
PsrI GAACNNNNNNTAC 4 cut(s) 711, 743, 1191, 1223
PstI CTGCAG 2 cut(s) 310, 1543
PstNI CAGNNNCTG 2 cut(s) 284, 1228
PsuI RGATCY 3 cut(s) 169, 345, 739
RsaI GTAC 3 cut(s) 422, 1028, 1503
RsaNI GTAC 3 cut(s) 421, 1027, 1502
RseI CAYNNNNRTG 1 cut(s) 774
SacII CCGCGG 2 cut(s) 103, 1488
SaqAI TTAA 3 cut(s) 27, 45, 774
Sau96I GGNCC 3 cut(s) 97, 191, 312
ScaI AGTACT 1 cut(s) 1503
SchI GAGTC 4 cut(s) 116, 1585, 1588, 1607
ScrFI CCNGG 4 cut(s) 21, 166, 206, 292
SfaNI GCATC 2 cut(s) 1402, 1518
SfcI CTRYAG 2 cut(s) 306, 1539
Sfr303I CCGCGG 2 cut(s) 103, 1488
SfuI TTCGAA 1 cut(s) 1315
SgrBI CCGCGG 2 cut(s) 103, 1488
SinI GGWCC 1 cut(s) 97
SmiMI CAYNNNNRTG 1 cut(s) 774
SmlI CTYRAG 3 cut(s) 642, 817, 1608
SmoI CTYRAG 3 cut(s) 642, 817, 1608
Sse9I AATT 6 cut(s) 233, 989, 1421, 1448, 1569, 1698
SsiI CCGC 7 cut(s) 100, 102, 189, 743, 781, 1485, 1487
SspI AATATT 1 cut(s) 862
SspMI CTAG 3 cut(s) 126, 180, 1505
StyD4I CCNGG 4 cut(s) 19, 164, 204, 290
StyI CCWWGG 1 cut(s) 560
TaaI ACNGT 1 cut(s) 1640
TaiI ACGT 2 cut(s) 267, 378
TaqI TCGA 5 cut(s) 417, 868, 1090, 1143, 1315
TaqII GACCGA 1 cut(s) 510
TasI AATT 6 cut(s) 233, 989, 1421, 1448, 1569, 1698
TatI WGTACW 3 cut(s) 420, 1026, 1501
TauI GCSGC 4 cut(s) 105, 192, 784, 1490
TfiI GAWTC 8 cut(s) 326, 434, 484, 698, 1013, 1039, 1496, 1535
Tru1I TTAA 3 cut(s) 27, 45, 774
Tru9I TTAA 3 cut(s) 27, 45, 774
TscAI CASTG 4 cut(s) 310, 444, 1108, 1645
TseFI GTSAC 1 cut(s) 299
Tsp45I GTSAC 1 cut(s) 299
TspGWI ACGGA 2 cut(s) 173, 1640
TspRI CASTG 4 cut(s) 310, 444, 1108, 1645
VpaK11BI GGWCC 1 cut(s) 97
XapI RAATTY 1 cut(s) 989
XmiI GTMKAC 2 cut(s) 567, 1002
XmnI GAANNNNTTC 1 cut(s) 140
XspI CTAG 3 cut(s) 126, 180, 1505
ZrmI AGTACT 1 cut(s) 1503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.