RLG00000012730
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001106
Physical Location & Seq
Reverse (-)
21683841 .. 21686074
2234 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012730

Sequence Viewer

Length: 1554 bp
ATGGCGTCTTCATTTGTTCCTGGTCTTAATCTTCCATCGGGTTTTAAGTTTCTTCCAACCAACGAAGAACTATTGGGATATTATCTTCTGAACAAGGTCCTCGACAAACCATTCAAGTATGACTCTAGGGTTATGAATGAATTCAATCTTTACAAGACGGAACCCTGGGATCTTTGGACTAGGTTTGGCGGCCCAAGACTGAACCAGGGTGAAGACCTCTTTATCTTTACCGAATTGAAGAAGGTGAATGATAATGGATCGAACGTGTCTCGCACGGCAGGTTCTGGCACCTGGAAAGGTGACACTGCAGGGGCCAAAGTATATGATTCAGAGGATAAGAAGAAGATCTTAGGATCGTGGAAAAGGTTTCATTACGTGCCGAAAGAACCAAATGAGAATGGTTCTTGGATTATGTTCGAGTACAAGCTTGATGATTCACTGATCCCCAAATCTTGTAGTGTTCTTGATCTTGTGCTGTGCCGGATTCGGAAAGACCGAAAGAGAAAGTTGATTGAAGATCAGATGAATGACACTTCTCAGTCCTCCCGTAGAAAGGTTCCAAGGGTAGACAAACATGATGTCATGTCTACTCATGGGAAACATATTATGAATGATGATACTAATCTGCCGGCTTCTTTTACTCAAGGCTTAGGTAGTGAGGATGAGGAGCAACAATCACAACAACGACAACAACTTGATTCTAACAAGAGCTTTGAGGAACAAGAAATACAACAAGAAGATCCGCAACCGAGGAGGCAACATTCTCATTTTCATGAGCAGCAGCAGCAGCTCCTCGGCAATGATCTGATGATCTCTAGTGATCCTTACATATTTCAAAGGGGAGAAACTTATGATCCTATGAATATTGTTCGACCTAACCCTAATGCTGTCATCAGTCATCAGCCGAACAATCTTGGCATTCCTTCTTATTTTCATGAGCAGCAGCAGCAGCTCCTTAGTGATGATCTGATGGCTTCTAGTCATCTTGACAAATTTCAGAGGGTAGACAAACAAGAATCTTATGTCATGTCCACTTACGAGAATCAGAATTTGAATGATGAAGATTATAACCTCATGGCTTCATCTTTTACTCGATGGTTATCCAGTGATGAGGAAAAGCAACAACCACAACAACAACAAGAAGTCGAACCTAACAAAACATATGAACCTATGAATGTTCAACCTAACCCAGATACCCTCATCAGTCATCAGCCGAACCATCTTAGCATTCCCATTGACATTGATGCAATCCAATTTGATGAATATTGGACGCCGAATGATTTACTTTTGGTTGACACCAATAATGATCCTTATACCGCGGCACCTGATTCAGTACTAGACACATCAAAGCCGGTGCAGATGCAAGATTCTGCTGGTAACGATAACAGCGAGATGATGAGGATTGATGAGAGTCATCATCAGACTCAACTGGGTTTCCCTCATGACTCAAACACGACGGAACTTTCTGACAGTGCTGCCCATAATGATGCGCTCAACTTTAGCACCCTTGATGACAATGTGTTTAATGTAATCGATCTTGACAACCTTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

518

Amino Acids

59.66

Weight (kDa)

4.74

Isoelectric Point (pI)

48.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 12 - 143 2.5e-23 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1068
Acc36I ACCTGC 1 cut(s) 269
AccB1I GGYRCC 2 cut(s) 287, 1321
AccI GTMKAC 3 cut(s) 567, 587, 1005
AccII CGCG 1 cut(s) 1319
AciI CCGC 4 cut(s) 189, 743, 1317, 1319
AclWI GGATC 8 cut(s) 177, 265, 361, 436, 734, 815, 848, 1301
AcsI RAATTY 3 cut(s) 140, 992, 1048
AcyI GRCGYC 2 cut(s) 5, 1271
AfaI GTAC 2 cut(s) 422, 1335
AfiI CCNNNNNNNGG 1 cut(s) 553
AflIII ACRYGT 1 cut(s) 264
AgsI TTSAA 7 cut(s) 115, 145, 238, 515, 836, 1054, 1181
AjnI CCWGG 4 cut(s) 19, 164, 204, 290
AluBI AGCT 4 cut(s) 427, 711, 790, 952
AluI AGCT 4 cut(s) 427, 711, 790, 952
Alw26I GTCTC 1 cut(s) 273
AlwI GGATC 8 cut(s) 177, 265, 361, 436, 734, 815, 848, 1301
AlwNI CAGNNNCTG 1 cut(s) 284
AoxI GGCC 2 cut(s) 190, 312
ApeKI GCWGC 9 cut(s) 778, 781, 784, 787, 940, 943, 946, 949, 1475
ApoI RAATTY 3 cut(s) 140, 992, 1048
ArsI GACNNNNNNTTYG 2 cut(s) 564, 596
Asp700I GAANNNNTTC 1 cut(s) 140
AspLEI GCGC 1 cut(s) 1492
AspS9I GGNCC 3 cut(s) 97, 191, 312
AsuHPI GGTGA 3 cut(s) 221, 256, 311
AvaII GGWCC 1 cut(s) 97
BanI GGYRCC 2 cut(s) 287, 1321
BbsI GAAGAC 1 cut(s) 219
BbvI GCAGC 9 cut(s) 790, 793, 796, 799, 952, 955, 958, 961, 1462
BccI CCATC 4 cut(s) 43, 964, 1089, 1227
BceAI ACGGC 1 cut(s) 291
BciT130I CCWGG 4 cut(s) 21, 166, 206, 292
BcoDI GTCTC 1 cut(s) 273
BfaI CTAG 5 cut(s) 126, 180, 816, 978, 1337
BfmI CTRYAG 1 cut(s) 306
BfuAI ACCTGC 1 cut(s) 269
BglII AGATCT 1 cut(s) 345
BmcAI AGTACT 1 cut(s) 1335
Bme1390I CCNGG 4 cut(s) 21, 166, 206, 292
Bme18I GGWCC 1 cut(s) 97
BmgT120I GGNCC 3 cut(s) 97, 191, 312
BmiI GGNNCC 5 cut(s) 162, 289, 313, 558, 1323
BmrFI CCNGG 4 cut(s) 21, 166, 206, 292
BmrI ACTGGG 1 cut(s) 1439
BmsI GCATC 3 cut(s) 1234, 1350, 1477
BmuI ACTGGG 1 cut(s) 1439
BpiI GAAGAC 1 cut(s) 219
Bpu10I CCTNAGC 1 cut(s) 649
BpuEI CTTGAG 1 cut(s) 627
Bsa29I ATCGAT 1 cut(s) 1533
BsaAI YACGTR 1 cut(s) 376
BsaBI GATNNNNATC 2 cut(s) 621, 1099
BsaHI GRCGYC 2 cut(s) 5, 1271
BsaJI CCNNGG 7 cut(s) 164, 165, 205, 560, 749, 793, 1317
Bsc4I CCNNNNNNNGG 1 cut(s) 553
Bse118I RCCGGY 2 cut(s) 628, 1351
Bse1I ACTGG 2 cut(s) 1104, 1434
Bse3DI GCAATG 1 cut(s) 805
Bse8I GATNNNNATC 2 cut(s) 621, 1099
BseBI CCWGG 4 cut(s) 21, 166, 206, 292
BseCI ATCGAT 1 cut(s) 1533
BseDI CCNNGG 7 cut(s) 164, 165, 205, 560, 749, 793, 1317
BseGI GGATG 1 cut(s) 667
BseJI GATNNNNATC 2 cut(s) 621, 1099
BseLI CCNNNNNNNGG 1 cut(s) 553
BseMI GCAATG 1 cut(s) 805
BseMII CTCAG 1 cut(s) 551
BseNI ACTGG 2 cut(s) 1104, 1434
BseRI GAGGAG 3 cut(s) 680, 766, 782
BseXI GCAGC 9 cut(s) 790, 793, 796, 799, 952, 955, 958, 961, 1462
BsgI GTGCAG 1 cut(s) 1376
Bsh1236I CGCG 1 cut(s) 1319
BshFI GGCC 2 cut(s) 192, 314
BshNI GGYRCC 2 cut(s) 287, 1321
BshVI ATCGAT 1 cut(s) 1533
BsiSI CCGG 3 cut(s) 481, 629, 1352
BslI CCNNNNNNNGG 1 cut(s) 553
BsmAI GTCTC 1 cut(s) 273
BsmI GAATGC 2 cut(s) 918, 1227
BsnI GGCC 2 cut(s) 192, 314
BspACI CCGC 4 cut(s) 189, 743, 1317, 1319
BspANI GGCC 2 cut(s) 192, 314
BspCNI CTCAG 1 cut(s) 550
BspDI ATCGAT 1 cut(s) 1533
BspFNI CGCG 1 cut(s) 1319
BspHI TCATGA 3 cut(s) 772, 934, 1441
BspLI GGNNCC 5 cut(s) 162, 289, 313, 558, 1323
BspMAI CTGCAG 1 cut(s) 310
BspMI ACCTGC 1 cut(s) 269
BspPI GGATC 8 cut(s) 177, 265, 361, 436, 734, 815, 848, 1301
BspT107I GGYRCC 2 cut(s) 287, 1321
BsrDI GCAATG 1 cut(s) 805
BsrFI RCCGGY 2 cut(s) 628, 1351
BsrI ACTGG 2 cut(s) 1104, 1434
BssAI RCCGGY 2 cut(s) 628, 1351
BssECI CCNNGG 7 cut(s) 164, 165, 205, 560, 749, 793, 1317
BssNI GRCGYC 2 cut(s) 5, 1271
BssT1I CCWWGG 1 cut(s) 560
Bst2UI CCWGG 4 cut(s) 21, 166, 206, 292
Bst4CI ACNGT 1 cut(s) 1472
BstACI GRCGYC 2 cut(s) 5, 1271
BstBAI YACGTR 1 cut(s) 376
BstC8I GCNNGC 1 cut(s) 630
BstDEI CTNAG 5 cut(s) 349, 537, 649, 956, 1223
BstDSI CCRYGG 1 cut(s) 1317
BstF5I GGATG 1 cut(s) 667
BstFNI CGCG 1 cut(s) 1319
BstHHI GCGC 1 cut(s) 1492
BstMAI GTCTC 1 cut(s) 273
BstMWI GCNNNNNNNGC 4 cut(s) 784, 787, 946, 949
BstNI CCWGG 4 cut(s) 21, 166, 206, 292
BstSCI CCNGG 4 cut(s) 19, 164, 204, 290
BstSFI CTRYAG 1 cut(s) 306
BstUI CGCG 1 cut(s) 1319
BstV1I GCAGC 9 cut(s) 790, 793, 796, 799, 952, 955, 958, 961, 1462
BstV2I GAAGAC 1 cut(s) 219
BstX2I RGATCY 3 cut(s) 169, 345, 739
BstYI RGATCY 3 cut(s) 169, 345, 739
Bsu15I ATCGAT 1 cut(s) 1533
BsuRI GGCC 2 cut(s) 192, 314
BsuTUI ATCGAT 1 cut(s) 1533
BtgI CCRYGG 1 cut(s) 1317
BtsCI GGATG 1 cut(s) 667
BtsI GCAGTG 1 cut(s) 303
BtsIMutI CAGTG 4 cut(s) 303, 437, 1111, 1477
BveI ACCTGC 1 cut(s) 269
Cac8I GCNNGC 1 cut(s) 630
CaiI CAGNNNCTG 1 cut(s) 284
CciI TCATGA 3 cut(s) 772, 934, 1441
CfoI GCGC 1 cut(s) 1492
Cfr10I RCCGGY 2 cut(s) 628, 1351
Cfr13I GGNCC 3 cut(s) 97, 191, 312
Cfr42I CCGCGG 1 cut(s) 1320
ClaI ATCGAT 1 cut(s) 1533
CseI GACGC 1 cut(s) 1279
Csp6I GTAC 2 cut(s) 421, 1334
CviAII CATG 8 cut(s) 575, 583, 593, 773, 935, 1027, 1075, 1442
CviQI GTAC 2 cut(s) 421, 1334
DdeI CTNAG 5 cut(s) 349, 537, 649, 956, 1223
Eco130I CCWWGG 1 cut(s) 560
Eco47I GGWCC 1 cut(s) 97
EcoO109I RGGNCCY 1 cut(s) 97
EcoRI GAATTC 1 cut(s) 140
EcoRII CCWGG 4 cut(s) 19, 164, 204, 290
EcoT14I CCWWGG 1 cut(s) 560
ErhI CCWWGG 1 cut(s) 560
FaeI CATG 8 cut(s) 578, 586, 596, 776, 938, 1030, 1078, 1445
FalI AAGNNNNNCTT 2 cut(s) 332, 364
FatI CATG 8 cut(s) 574, 582, 592, 772, 934, 1026, 1074, 1441
FauNDI CATATG 1 cut(s) 1162
FblI GTMKAC 3 cut(s) 567, 587, 1005
FokI GGATG 1 cut(s) 674
FspBI CTAG 5 cut(s) 126, 180, 816, 978, 1337
GlaI GCGC 1 cut(s) 1491
HaeIII GGCC 2 cut(s) 192, 314
HapII CCGG 3 cut(s) 481, 629, 1352
HgaI GACGC 1 cut(s) 1279
HhaI GCGC 1 cut(s) 1492
Hin1I GRCGYC 2 cut(s) 5, 1271
Hin1II CATG 8 cut(s) 578, 586, 596, 776, 938, 1030, 1078, 1445
Hin6I GCGC 1 cut(s) 1490
HinP1I GCGC 1 cut(s) 1490
HincII GTYRAC 1 cut(s) 1294
HindII GTYRAC 1 cut(s) 1294
HindIII AAGCTT 1 cut(s) 425
HpaII CCGG 3 cut(s) 481, 629, 1352
HphI GGTGA 3 cut(s) 221, 256, 311
Hpy166II GTNNAC 5 cut(s) 568, 588, 1006, 1032, 1294
Hpy188III TCNNGA 6 cut(s) 464, 773, 935, 986, 1442, 1538
Hpy8I GTNNAC 5 cut(s) 568, 588, 1006, 1032, 1294
Hpy99I CGWCG 1 cut(s) 1459
HpyAV CCTTC 2 cut(s) 235, 933
HpyCH4III ACNGT 1 cut(s) 1472
HpyCH4IV ACGT 2 cut(s) 264, 375
HpyCH4V TGCA 4 cut(s) 308, 1247, 1357, 1363
HpyF10VI GCNNNNNNNGC 4 cut(s) 784, 787, 946, 949
HpyF3I CTNAG 5 cut(s) 349, 537, 649, 956, 1223
HpySE526I ACGT 2 cut(s) 264, 375
Hsp92I GRCGYC 2 cut(s) 5, 1271
Hsp92II CATG 8 cut(s) 578, 586, 596, 776, 938, 1030, 1078, 1445
HspAI GCGC 1 cut(s) 1490
KroI GCCGGC 1 cut(s) 628
KroNI GCCGGC 1 cut(s) 630
KspI CCGCGG 1 cut(s) 1320
LmnI GCTCC 3 cut(s) 667, 795, 957
Lsp1109I GCAGC 9 cut(s) 790, 793, 796, 799, 952, 955, 958, 961, 1462
LweI GCATC 3 cut(s) 1234, 1350, 1477
MaeI CTAG 5 cut(s) 126, 180, 816, 978, 1337
MaeII ACGT 2 cut(s) 264, 375
MaeIII GTNAC 2 cut(s) 299, 1376
MflI RGATCY 3 cut(s) 169, 345, 739
MluCI AATT 5 cut(s) 140, 233, 992, 1048, 1253
MlyI GAGTC 4 cut(s) 116, 1417, 1420, 1439
MmeI TCCRAC 1 cut(s) 80
MroNI GCCGGC 1 cut(s) 628
MroXI GAANNNNTTC 1 cut(s) 140
MseI TTAA 3 cut(s) 27, 45, 1524
MslI CAYNNNNRTG 2 cut(s) 771, 1485
MspA1I CMGCKG 1 cut(s) 1319
MspI CCGG 3 cut(s) 481, 629, 1352
MspR9I CCNGG 4 cut(s) 21, 166, 206, 292
Mva1269I GAATGC 2 cut(s) 918, 1227
MvaI CCWGG 4 cut(s) 21, 166, 206, 292
MvnI CGCG 1 cut(s) 1319
MwoI GCNNNNNNNGC 4 cut(s) 784, 787, 946, 949
NaeI GCCGGC 1 cut(s) 630
NdeI CATATG 1 cut(s) 1162
NgoMIV GCCGGC 1 cut(s) 628
NlaIII CATG 8 cut(s) 578, 586, 596, 776, 938, 1030, 1078, 1445
NlaIV GGNNCC 5 cut(s) 162, 289, 313, 558, 1323
NmeAIII GCCGAG 1 cut(s) 774
NmuCI GTSAC 1 cut(s) 299
PagI TCATGA 3 cut(s) 772, 934, 1441
PasI CCCWGGG 1 cut(s) 165
PcsI WCGNNNNNNNCGW 2 cut(s) 493, 1386
PctI GAATGC 2 cut(s) 918, 1227
PdiI GCCGGC 1 cut(s) 630
PdmI GAANNNNTTC 1 cut(s) 140
PfeI GAWTC 8 cut(s) 326, 434, 484, 698, 1016, 1042, 1328, 1367
PleI GAGTC 4 cut(s) 116, 1417, 1419, 1439
PpsI GAGTC 4 cut(s) 116, 1417, 1419, 1439
Ppu21I YACGTR 1 cut(s) 376
PpuMI RGGWCCY 1 cut(s) 97
PsiI TTATAA 1 cut(s) 1068
Psp5II RGGWCCY 1 cut(s) 97
Psp6I CCWGG 4 cut(s) 19, 164, 204, 290
PspGI CCWGG 4 cut(s) 19, 164, 204, 290
PspN4I GGNNCC 5 cut(s) 162, 289, 313, 558, 1323
PspPI GGNCC 3 cut(s) 97, 191, 312
PspPPI RGGWCCY 1 cut(s) 97
PsrI GAACNNNNNNTAC 2 cut(s) 711, 743
PstI CTGCAG 1 cut(s) 310
PstNI CAGNNNCTG 1 cut(s) 284
PsuI RGATCY 3 cut(s) 169, 345, 739
RsaI GTAC 2 cut(s) 422, 1335
RsaNI GTAC 2 cut(s) 421, 1334
RseI CAYNNNNRTG 2 cut(s) 771, 1485
SacII CCGCGG 1 cut(s) 1320
SaqAI TTAA 3 cut(s) 27, 45, 1524
Sau96I GGNCC 3 cut(s) 97, 191, 312
ScaI AGTACT 1 cut(s) 1335
SchI GAGTC 4 cut(s) 116, 1417, 1420, 1439
ScrFI CCNGG 4 cut(s) 21, 166, 206, 292
SfaNI GCATC 3 cut(s) 1234, 1350, 1477
SfcI CTRYAG 1 cut(s) 306
Sfr303I CCGCGG 1 cut(s) 1320
SgrBI CCGCGG 1 cut(s) 1320
SinI GGWCC 1 cut(s) 97
SmiMI CAYNNNNRTG 2 cut(s) 771, 1485
SmlI CTYRAG 1 cut(s) 642
SmoI CTYRAG 1 cut(s) 642
Sse9I AATT 5 cut(s) 140, 233, 992, 1048, 1253
SsiI CCGC 4 cut(s) 189, 743, 1317, 1319
SspI AATATT 2 cut(s) 865, 1265
SspMI CTAG 5 cut(s) 126, 180, 816, 978, 1337
StyD4I CCNGG 4 cut(s) 19, 164, 204, 290
StyI CCWWGG 1 cut(s) 560
TaaI ACNGT 1 cut(s) 1472
TaiI ACGT 2 cut(s) 267, 378
TaqI TCGA 7 cut(s) 102, 260, 417, 871, 1093, 1146, 1533
TaqII GACCGA 1 cut(s) 510
TasI AATT 5 cut(s) 140, 233, 992, 1048, 1253
TatI WGTACW 2 cut(s) 420, 1333
TauI GCSGC 2 cut(s) 192, 1322
TfiI GAWTC 8 cut(s) 326, 434, 484, 698, 1016, 1042, 1328, 1367
Tru1I TTAA 3 cut(s) 27, 45, 1524
Tru9I TTAA 3 cut(s) 27, 45, 1524
TscAI CASTG 4 cut(s) 310, 444, 1111, 1477
TseFI GTSAC 1 cut(s) 299
TseI GCWGC 9 cut(s) 778, 781, 784, 787, 940, 943, 946, 949, 1475
Tsp45I GTSAC 1 cut(s) 299
TspGWI ACGGA 2 cut(s) 173, 1472
TspRI CASTG 4 cut(s) 310, 444, 1111, 1477
VpaK11BI GGWCC 1 cut(s) 97
XapI RAATTY 3 cut(s) 140, 992, 1048
XmiI GTMKAC 3 cut(s) 567, 587, 1005
XmnI GAANNNNTTC 1 cut(s) 140
XspI CTAG 5 cut(s) 126, 180, 816, 978, 1337
ZrmI AGTACT 1 cut(s) 1335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.