Rroxscaffold_7G00184470

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0001106
Physical Location & Seq
Reverse (-)
23670210 .. 23671067
858 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00184470.1

Sequence Viewer

Length: 858 bp
ATGAATATTGTTCGACCTAACCCTAATGCTGTCATGAGTCATCAGCCGAACAATCTTGGCATTCCTTCTTATTTTCATGAGCAGCAGCAGCAGCTCCTTAGTGATGATCTGATGGTTTCTAGTCATCTTGACAAATTTCAGAGGGTAGACAAACAAGAATCTTATGTCATGTACACTTGCGAGAATCAGATTTTGAATGATGAAGATTATAACCTCATGGCTTCATCTTTTACTCGATGGTTATCCAGTGATGAGGAAAAGCAACAACCACAACAACAACAAGAAGTAGAACCTAACAATATGCGTGCCGGACAGCACTCCTCGGTGAGCTTTGAGCGTGAGGAACAACAACAACATCAGCAACTGCTGCCCTCTACCTCTGATTTTCATGAGAAACAGCAACAGCTCCTCGGCAATGATCTGATGGTTTGTAGTGATCATGACATATTTCGAAGGGCAGAAACATATGAACCTATGAATGTCCAACCTAACCCAGATACCCTCATCAGTCATCAGCCGAACCATCTTAGCATTCCCATTGACATAGATGCAATCCAATTTGATGATTATTGGACGCCGAATGAATTACTTTTGGTTGACACCAATAATGATCTTTATGCCGCGGCACCTGATTCAGTACTAGACACGTCAAAGCCGTTGCAGATGCAAGATTCTGCAGCTAACGATAACAACGAGATGATGAGGATTGATGAGAGTCATGATCAGACTCAACTGGGTTTCCCTCATGACTCAAACACGACGGAACCTTCTGACAGTGCTGCCCATAATGAAGCGCTCAACTTTAGCACCCTTGATGACGATGTGTTCAATGTAATTGATCTTGACAACCTTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

285

Amino Acids

32.85

Weight (kDa)

4.2

Isoelectric Point (pI)

47.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 210
AccB1I GGYRCC 1 cut(s) 625
AccI GTMKAC 1 cut(s) 147
AccII CGCG 1 cut(s) 623
AciI CCGC 2 cut(s) 621, 623
AcsI RAATTY 1 cut(s) 134
AcyI GRCGYC 1 cut(s) 575
AfaI GTAC 2 cut(s) 173, 639
AfeI AGCGCT 1 cut(s) 795
AflIII ACRYGT 1 cut(s) 645
AgsI TTSAA 2 cut(s) 196, 829
AjiI CACGTC 1 cut(s) 648
AluBI AGCT 4 cut(s) 94, 330, 406, 680
AluI AGCT 4 cut(s) 94, 330, 406, 680
AlwNI CAGNNNCTG 1 cut(s) 364
Aor51HI AGCGCT 1 cut(s) 795
ApeKI GCWGC 7 cut(s) 82, 85, 88, 91, 367, 677, 779
ApoI RAATTY 1 cut(s) 134
AspLEI GCGC 1 cut(s) 796
AsuHPI GGTGA 1 cut(s) 337
AsuII TTCGAA 1 cut(s) 451
BanI GGYRCC 1 cut(s) 625
BbvI GCAGC 7 cut(s) 94, 97, 100, 103, 354, 689, 766
BccI CCATC 4 cut(s) 106, 231, 418, 531
BceAI ACGGC 1 cut(s) 640
BclI TGATCA 2 cut(s) 436, 721
BfaI CTAG 2 cut(s) 120, 641
BfmI CTRYAG 1 cut(s) 675
BfoI RGCGCY 1 cut(s) 797
BisI GCNGC 9 cut(s) 83, 86, 89, 92, 368, 621, 624, 678, 780
BlsI GCNGC 9 cut(s) 84, 87, 90, 93, 369, 622, 625, 679, 781
BmcAI AGTACT 1 cut(s) 639
BmgBI CACGTC 1 cut(s) 648
BmiI GGNNCC 2 cut(s) 627, 765
BmrI ACTGGG 1 cut(s) 743
BmsI GCATC 2 cut(s) 538, 654
BmuI ACTGGG 1 cut(s) 743
Bpu14I TTCGAA 1 cut(s) 451
BsaBI GATNNNNATC 1 cut(s) 241
BsaHI GRCGYC 1 cut(s) 575
BsaJI CCNNGG 3 cut(s) 321, 409, 621
Bse1I ACTGG 2 cut(s) 246, 738
Bse3DI GCAATG 1 cut(s) 421
Bse8I GATNNNNATC 1 cut(s) 241
BseDI CCNNGG 3 cut(s) 321, 409, 621
BseJI GATNNNNATC 1 cut(s) 241
BseMI GCAATG 1 cut(s) 421
BseNI ACTGG 2 cut(s) 246, 738
BseRI GAGGAG 2 cut(s) 310, 398
BseXI GCAGC 7 cut(s) 94, 97, 100, 103, 354, 689, 766
Bsh1236I CGCG 1 cut(s) 623
BshNI GGYRCC 1 cut(s) 625
BsiSI CCGG 1 cut(s) 309
BsmI GAATGC 2 cut(s) 60, 531
Bsp119I TTCGAA 1 cut(s) 451
Bsp1407I TGTACA 1 cut(s) 171
Bsp143I GATC 6 cut(s) 106, 418, 436, 610, 721, 838
BspACI CCGC 2 cut(s) 621, 623
BspFNI CGCG 1 cut(s) 623
BspHI TCATGA 6 cut(s) 33, 76, 388, 439, 718, 745
BspLI GGNNCC 2 cut(s) 627, 765
BspMAI CTGCAG 1 cut(s) 679
BspT104I TTCGAA 1 cut(s) 451
BspT107I GGYRCC 1 cut(s) 625
BsrDI GCAATG 1 cut(s) 421
BsrGI TGTACA 1 cut(s) 171
BsrI ACTGG 2 cut(s) 246, 738
BssECI CCNNGG 3 cut(s) 321, 409, 621
BssMI GATC 6 cut(s) 106, 418, 436, 610, 721, 838
BssNI GRCGYC 1 cut(s) 575
Bst4CI ACNGT 1 cut(s) 776
BstACI GRCGYC 1 cut(s) 575
BstAPI GCANNNNNTGC 1 cut(s) 367
BstAUI TGTACA 1 cut(s) 171
BstBI TTCGAA 1 cut(s) 451
BstC8I GCNNGC 1 cut(s) 306
BstDEI CTNAG 2 cut(s) 98, 527
BstDSI CCRYGG 1 cut(s) 621
BstFNI CGCG 1 cut(s) 623
BstH2I RGCGCY 1 cut(s) 797
BstHHI GCGC 1 cut(s) 796
BstKTI GATC 6 cut(s) 109, 421, 439, 613, 724, 841
BstMBI GATC 6 cut(s) 106, 418, 436, 610, 721, 838
BstMWI GCNNNNNNNGC 3 cut(s) 88, 91, 367
BstSFI CTRYAG 1 cut(s) 675
BstUI CGCG 1 cut(s) 623
BstV1I GCAGC 7 cut(s) 94, 97, 100, 103, 354, 689, 766
BtgI CCRYGG 1 cut(s) 621
BtrI CACGTC 1 cut(s) 648
BtsIMutI CAGTG 2 cut(s) 253, 781
Cac8I GCNNGC 1 cut(s) 306
CaiI CAGNNNCTG 1 cut(s) 364
CciI TCATGA 6 cut(s) 33, 76, 388, 439, 718, 745
CfoI GCGC 1 cut(s) 796
Cfr42I CCGCGG 1 cut(s) 624
CseI GACGC 1 cut(s) 583
Csp6I GTAC 2 cut(s) 172, 638
CviAII CATG 8 cut(s) 34, 77, 169, 217, 389, 440, 719, 746
CviJI RGCY 8 cut(s) 46, 94, 221, 330, 406, 517, 655, 680
CviKI_1 RGCY 8 cut(s) 46, 94, 221, 330, 406, 517, 655, 680
CviQI GTAC 2 cut(s) 172, 638
DdeI CTNAG 2 cut(s) 98, 527
DpnI GATC 6 cut(s) 108, 420, 438, 612, 723, 840
DpnII GATC 6 cut(s) 106, 418, 436, 610, 721, 838
Eco47III AGCGCT 1 cut(s) 795
FaeI CATG 8 cut(s) 37, 80, 172, 220, 392, 443, 722, 749
FatI CATG 8 cut(s) 33, 76, 168, 216, 388, 439, 718, 745
FauNDI CATATG 1 cut(s) 466
FbaI TGATCA 2 cut(s) 436, 721
FblI GTMKAC 1 cut(s) 147
Fnu4HI GCNGC 9 cut(s) 83, 86, 89, 92, 368, 621, 624, 678, 780
Fsp4HI GCNGC 9 cut(s) 83, 86, 89, 92, 368, 621, 624, 678, 780
FspBI CTAG 2 cut(s) 120, 641
GlaI GCGC 1 cut(s) 795
GluI GCNGC 9 cut(s) 83, 86, 89, 92, 368, 621, 624, 678, 780
HaeII RGCGCY 1 cut(s) 797
HapII CCGG 1 cut(s) 309
HgaI GACGC 1 cut(s) 583
HhaI GCGC 1 cut(s) 796
Hin1I GRCGYC 1 cut(s) 575
Hin1II CATG 8 cut(s) 37, 80, 172, 220, 392, 443, 722, 749
Hin6I GCGC 1 cut(s) 794
HinP1I GCGC 1 cut(s) 794
HincII GTYRAC 1 cut(s) 598
HindII GTYRAC 1 cut(s) 598
HinfI GANTC 8 cut(s) 37, 158, 184, 632, 671, 715, 727, 749
HpaII CCGG 1 cut(s) 309
HphI GGTGA 1 cut(s) 337
Hpy166II GTNNAC 3 cut(s) 148, 174, 598
Hpy188I TCNGA 7 cut(s) 111, 141, 189, 382, 423, 726, 772
Hpy188III TCNNGA 8 cut(s) 34, 77, 128, 389, 440, 719, 746, 842
Hpy8I GTNNAC 3 cut(s) 148, 174, 598
Hpy99I CGWCG 1 cut(s) 763
HpyAV CCTTC 3 cut(s) 75, 447, 777
HpyCH4III ACNGT 1 cut(s) 776
HpyCH4IV ACGT 1 cut(s) 647
HpyCH4V TGCA 4 cut(s) 551, 661, 667, 677
HpyF10VI GCNNNNNNNGC 3 cut(s) 88, 91, 367
HpyF3I CTNAG 2 cut(s) 98, 527
HpySE526I ACGT 1 cut(s) 647
Hsp92I GRCGYC 1 cut(s) 575
Hsp92II CATG 8 cut(s) 37, 80, 172, 220, 392, 443, 722, 749
HspAI GCGC 1 cut(s) 794
Ksp22I TGATCA 2 cut(s) 436, 721
KspI CCGCGG 1 cut(s) 624
Kzo9I GATC 6 cut(s) 106, 418, 436, 610, 721, 838
LmnI GCTCC 2 cut(s) 99, 411
LpnPI CCDG 5 cut(s) 259, 322, 507, 642, 719
Lsp1109I GCAGC 7 cut(s) 94, 97, 100, 103, 354, 689, 766
LweI GCATC 2 cut(s) 538, 654
MaeI CTAG 2 cut(s) 120, 641
MaeII ACGT 1 cut(s) 647
MalI GATC 6 cut(s) 108, 420, 438, 612, 723, 840
MboI GATC 6 cut(s) 106, 418, 436, 610, 721, 838
MboII GAAGA 1 cut(s) 215
MluCI AATT 4 cut(s) 134, 557, 584, 834
MlyI GAGTC 4 cut(s) 46, 721, 724, 743
MmeI TCCRAC 1 cut(s) 508
MspA1I CMGCKG 1 cut(s) 623
MspI CCGG 1 cut(s) 309
Mva1269I GAATGC 2 cut(s) 60, 531
MvnI CGCG 1 cut(s) 623
MwoI GCNNNNNNNGC 3 cut(s) 88, 91, 367
NdeI CATATG 1 cut(s) 466
NdeII GATC 6 cut(s) 106, 418, 436, 610, 721, 838
NlaIII CATG 8 cut(s) 37, 80, 172, 220, 392, 443, 722, 749
NlaIV GGNNCC 2 cut(s) 627, 765
NmeAIII GCCGAG 1 cut(s) 390
NspV TTCGAA 1 cut(s) 451
PagI TCATGA 6 cut(s) 33, 76, 388, 439, 718, 745
PcsI WCGNNNNNNNCGW 2 cut(s) 653, 690
PctI GAATGC 2 cut(s) 60, 531
PfeI GAWTC 4 cut(s) 158, 184, 632, 671
PkrI GCNGC 9 cut(s) 84, 87, 90, 93, 369, 622, 625, 679, 781
PleI GAGTC 4 cut(s) 45, 721, 723, 743
PpsI GAGTC 4 cut(s) 45, 721, 723, 743
PsiI TTATAA 1 cut(s) 210
PspN4I GGNNCC 2 cut(s) 627, 765
PstI CTGCAG 1 cut(s) 679
PstNI CAGNNNCTG 1 cut(s) 364
RsaI GTAC 2 cut(s) 173, 639
RsaNI GTAC 2 cut(s) 172, 638
SacII CCGCGG 1 cut(s) 624
SatI GCNGC 9 cut(s) 83, 86, 89, 92, 368, 621, 624, 678, 780
Sau3AI GATC 6 cut(s) 106, 418, 436, 610, 721, 838
ScaI AGTACT 1 cut(s) 639
SchI GAGTC 4 cut(s) 46, 721, 724, 743
SfaNI GCATC 2 cut(s) 538, 654
SfcI CTRYAG 1 cut(s) 675
Sfr303I CCGCGG 1 cut(s) 624
SfuI TTCGAA 1 cut(s) 451
SgrBI CCGCGG 1 cut(s) 624
Sse9I AATT 4 cut(s) 134, 557, 584, 834
SsiI CCGC 2 cut(s) 621, 623
SspI AATATT 1 cut(s) 7
SspMI CTAG 2 cut(s) 120, 641
TaaI ACNGT 1 cut(s) 776
TaiI ACGT 1 cut(s) 650
TaqI TCGA 3 cut(s) 13, 235, 451
TasI AATT 4 cut(s) 134, 557, 584, 834
TatI WGTACW 2 cut(s) 171, 637
TauI GCSGC 2 cut(s) 623, 626
TfiI GAWTC 4 cut(s) 158, 184, 632, 671
TscAI CASTG 2 cut(s) 253, 781
TseI GCWGC 7 cut(s) 82, 85, 88, 91, 367, 677, 779
TspDTI ATGAA 9 cut(s) 17, 65, 213, 216, 377, 483, 491, 597, 804
TspGWI ACGGA 1 cut(s) 776
TspRI CASTG 2 cut(s) 253, 781
XapI RAATTY 1 cut(s) 134
XmiI GTMKAC 1 cut(s) 147
XspI CTAG 2 cut(s) 120, 641
ZrmI AGTACT 1 cut(s) 639
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.