Rw6G017520

Egg cell-secreted protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0001106
Physical Location & Seq
Forward (+)
34750051 .. 34750716
666 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G017520.1

Sequence Viewer

Length: 495 bp
ATGACACATTATCTCCTGGATAACAGAATCACAATGGCCTTTAACACTTCCAATCTCTTCCTAACTCTCACTGCTCTCATTGCCCTGACCATGCCGTTCATGGCTTCTGCTTATCGACCCTTGGTGACGAATGACCCAACCGGATCAGATCCAAGCCTGGCAGCTAGGTTGAATTTGGATGGAGAATCCTCCAACTGCTGGGATTCTTTGCTTCAGCTCCAGTCATGTAGCGGTGAGGCTATAATGTTTTTCTTGAATGGCCAGACATCTTTGGGTGATGGATGTTGTGAAGCTATTCGGGTAATCGAGCACCAGTGCTGGCCTGCCTTGCTCGGCGCTCTAGGGTTTACCACGGAAGAGACTGATATTCTCAAAGGTTATTGCGACGAGGCTGAACAAACTCATCATTCTCCTCCGTCGATACCATCACCACCGTCCCTTTTTCATCCTAATAGAGCAGTTCATGTTCCTTATCAGAATGATATGGCTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

164

Amino Acids

17.95

Weight (kDa)

4.62

Isoelectric Point (pI)

51.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prolamin_like PF05617 65 - 129 5.2e-17 Prolamin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 198
AciI CCGC 1 cut(s) 231
AclWI GGATC 2 cut(s) 143, 151
AcoI YGGCCR 1 cut(s) 259
AcsI RAATTY 1 cut(s) 172
AcuI CTGAAG 1 cut(s) 197
AfiI CCNNNNNNNGG 1 cut(s) 198
AgsI TTSAA 2 cut(s) 172, 256
AjnI CCWGG 2 cut(s) 15, 156
AluBI AGCT 3 cut(s) 164, 217, 293
AluI AGCT 3 cut(s) 164, 217, 293
Alw21I GWGCWC 1 cut(s) 312
Alw26I GTCTC 1 cut(s) 353
AlwI GGATC 2 cut(s) 143, 151
AoxI GGCC 3 cut(s) 36, 259, 320
ApeKI GCWGC 1 cut(s) 161
ApoI RAATTY 1 cut(s) 172
Asp700I GAANNNNTTC 1 cut(s) 294
AspLEI GCGC 1 cut(s) 338
AsuHPI GGTGA 4 cut(s) 136, 245, 287, 420
BalI TGGCCA 1 cut(s) 261
Bbv12I GWGCWC 1 cut(s) 312
BbvI GCAGC 1 cut(s) 173
BccI CCATC 3 cut(s) 173, 272, 433
BceAI ACGGC 1 cut(s) 79
BciT130I CCWGG 2 cut(s) 17, 158
BcoDI GTCTC 1 cut(s) 353
BfaI CTAG 2 cut(s) 165, 341
BfoI RGCGCY 1 cut(s) 339
BisI GCNGC 1 cut(s) 162
BlsI GCNGC 1 cut(s) 163
Bme1390I CCNGG 2 cut(s) 17, 158
BmiI GGNNCC 1 cut(s) 489
BmrFI CCNGG 2 cut(s) 17, 158
BpmI CTGGAG 1 cut(s) 203
BsaJI CCNNGG 2 cut(s) 120, 351
BsaWI WCCGGW 1 cut(s) 140
BsaXI ACNNNNNCTCC 1 cut(s) 27
Bsc4I CCNNNNNNNGG 1 cut(s) 198
Bse1I ACTGG 2 cut(s) 220, 313
Bse3DI GCAATG 1 cut(s) 78
BseBI CCWGG 2 cut(s) 17, 158
BseDI CCNNGG 2 cut(s) 120, 351
BseGI GGATG 3 cut(s) 184, 287, 445
BseLI CCNNNNNNNGG 1 cut(s) 198
BseMI GCAATG 1 cut(s) 78
BseNI ACTGG 2 cut(s) 220, 313
BseRI GAGGAG 1 cut(s) 402
BseXI GCAGC 1 cut(s) 173
BseYI CCCAGC 1 cut(s) 198
BshFI GGCC 3 cut(s) 38, 261, 322
BsiHKAI GWGCWC 1 cut(s) 312
BsiSI CCGG 1 cut(s) 141
BslFI GGGAC 1 cut(s) 421
BslI CCNNNNNNNGG 1 cut(s) 198
BsmAI GTCTC 1 cut(s) 353
BsmFI GGGAC 1 cut(s) 421
BsnI GGCC 3 cut(s) 38, 261, 322
Bsp1286I GDGCHC 1 cut(s) 312
Bsp143I GATC 2 cut(s) 143, 148
BspACI CCGC 1 cut(s) 231
BspANI GGCC 3 cut(s) 38, 261, 322
BspLI GGNNCC 1 cut(s) 489
BspPI GGATC 2 cut(s) 143, 151
BsrDI GCAATG 1 cut(s) 78
BsrI ACTGG 2 cut(s) 220, 313
BssECI CCNNGG 2 cut(s) 120, 351
BssMI GATC 2 cut(s) 143, 148
BssT1I CCWWGG 1 cut(s) 120
Bst2UI CCWGG 2 cut(s) 17, 158
Bst4CI ACNGT 1 cut(s) 435
Bst6I CTCTTC 2 cut(s) 62, 351
BstC8I GCNNGC 2 cut(s) 320, 324
BstDSI CCRYGG 1 cut(s) 351
BstF5I GGATG 3 cut(s) 184, 287, 445
BstH2I RGCGCY 1 cut(s) 339
BstHHI GCGC 1 cut(s) 338
BstKTI GATC 2 cut(s) 146, 151
BstMAI GTCTC 1 cut(s) 353
BstMBI GATC 2 cut(s) 143, 148
BstMWI GCNNNNNNNGC 2 cut(s) 80, 328
BstNI CCWGG 2 cut(s) 17, 158
BstSCI CCNGG 2 cut(s) 15, 156
BstV1I GCAGC 1 cut(s) 173
BstX2I RGATCY 1 cut(s) 148
BstYI RGATCY 1 cut(s) 148
BsuRI GGCC 3 cut(s) 38, 261, 322
BtgI CCRYGG 1 cut(s) 351
BtsCI GGATG 3 cut(s) 184, 287, 445
BtsI GCAGTG 1 cut(s) 69
BtsIMutI CAGTG 2 cut(s) 69, 320
Cac8I GCNNGC 2 cut(s) 320, 324
CfoI GCGC 1 cut(s) 338
CviAII CATG 4 cut(s) 91, 100, 225, 464
DpnI GATC 2 cut(s) 145, 150
DpnII GATC 2 cut(s) 143, 148
EaeI YGGCCR 1 cut(s) 259
Eam1104I CTCTTC 2 cut(s) 62, 351
EarI CTCTTC 2 cut(s) 62, 351
Eco130I CCWWGG 1 cut(s) 120
Eco57I CTGAAG 1 cut(s) 197
EcoRII CCWGG 2 cut(s) 15, 156
EcoT14I CCWWGG 1 cut(s) 120
ErhI CCWWGG 1 cut(s) 120
FaeI CATG 4 cut(s) 94, 103, 228, 467
FaiI YATR 6 cut(s) 92, 101, 226, 242, 465, 485
FaqI GGGAC 1 cut(s) 421
FatI CATG 4 cut(s) 90, 99, 224, 463
Fnu4HI GCNGC 1 cut(s) 162
FokI GGATG 3 cut(s) 191, 294, 432
Fsp4HI GCNGC 1 cut(s) 162
FspBI CTAG 2 cut(s) 165, 341
GlaI GCGC 1 cut(s) 337
GluI GCNGC 1 cut(s) 162
GsaI CCCAGC 1 cut(s) 202
GsuI CTGGAG 1 cut(s) 203
HaeII RGCGCY 1 cut(s) 339
HaeIII GGCC 3 cut(s) 38, 261, 322
HapII CCGG 1 cut(s) 141
HhaI GCGC 1 cut(s) 338
Hin1II CATG 4 cut(s) 94, 103, 228, 467
Hin6I GCGC 1 cut(s) 336
HinP1I GCGC 1 cut(s) 336
HinfI GANTC 3 cut(s) 27, 185, 203
HpaII CCGG 1 cut(s) 141
HphI GGTGA 4 cut(s) 136, 245, 287, 420
Hpy166II GTNNAC 1 cut(s) 348
Hpy188I TCNGA 2 cut(s) 148, 477
Hpy188III TCNNGA 1 cut(s) 253
Hpy8I GTNNAC 1 cut(s) 348
Hpy99I CGWCG 2 cut(s) 389, 421
HpyCH4III ACNGT 1 cut(s) 435
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 328
Hsp92II CATG 4 cut(s) 94, 103, 228, 467
HspAI GCGC 1 cut(s) 336
Kzo9I GATC 2 cut(s) 143, 148
LmnI GCTCC 2 cut(s) 222, 493
Lsp1109I GCAGC 1 cut(s) 173
MaeI CTAG 2 cut(s) 165, 341
MaeIII GTNAC 1 cut(s) 124
MalI GATC 2 cut(s) 145, 150
MboI GATC 2 cut(s) 143, 148
MboII GAAGA 2 cut(s) 49, 368
MflI RGATCY 1 cut(s) 148
MhlI GDGCHC 1 cut(s) 312
MlsI TGGCCA 1 cut(s) 261
MluCI AATT 1 cut(s) 172
MluNI TGGCCA 1 cut(s) 261
MmeI TCCRAC 1 cut(s) 216
MnlI CCTC 4 cut(s) 199, 229, 382, 423
Mox20I TGGCCA 1 cut(s) 261
MroXI GAANNNNTTC 1 cut(s) 294
MscI TGGCCA 1 cut(s) 261
MseI TTAA 1 cut(s) 42
Msp20I TGGCCA 1 cut(s) 261
MspI CCGG 1 cut(s) 141
MspR9I CCNGG 2 cut(s) 17, 158
MvaI CCWGG 2 cut(s) 17, 158
MwoI GCNNNNNNNGC 2 cut(s) 80, 328
NdeII GATC 2 cut(s) 143, 148
NlaIII CATG 4 cut(s) 94, 103, 228, 467
NlaIV GGNNCC 1 cut(s) 489
NmeAIII GCCGAG 1 cut(s) 312
NmuCI GTSAC 1 cut(s) 124
PdmI GAANNNNTTC 1 cut(s) 294
PfeI GAWTC 3 cut(s) 27, 185, 203
PflMI CCANNNNNTGG 1 cut(s) 198
PfoI TCCNGGA 1 cut(s) 15
PkrI GCNGC 1 cut(s) 163
Psp6I CCWGG 2 cut(s) 15, 156
PspFI CCCAGC 1 cut(s) 198
PspGI CCWGG 2 cut(s) 15, 156
PspN4I GGNNCC 1 cut(s) 489
PsuI RGATCY 1 cut(s) 148
SaqAI TTAA 1 cut(s) 42
SatI GCNGC 1 cut(s) 162
Sau3AI GATC 2 cut(s) 143, 148
ScrFI CCNGG 2 cut(s) 17, 158
SduI GDGCHC 1 cut(s) 312
SetI ASST 5 cut(s) 166, 170, 219, 295, 379
Sse9I AATT 1 cut(s) 172
SsiI CCGC 1 cut(s) 231
SspMI CTAG 2 cut(s) 165, 341
StyD4I CCNGG 2 cut(s) 15, 156
StyI CCWWGG 1 cut(s) 120
TaaI ACNGT 1 cut(s) 435
TaqI TCGA 3 cut(s) 115, 306, 419
TasI AATT 1 cut(s) 172
TfiI GAWTC 3 cut(s) 27, 185, 203
Tru1I TTAA 1 cut(s) 42
Tru9I TTAA 1 cut(s) 42
TscAI CASTG 2 cut(s) 76, 320
TseFI GTSAC 1 cut(s) 124
TseI GCWGC 1 cut(s) 161
Tsp45I GTSAC 1 cut(s) 124
TspDTI ATGAA 3 cut(s) 88, 434, 452
TspGWI ACGGA 2 cut(s) 368, 405
TspRI CASTG 2 cut(s) 76, 320
Van91I CCANNNNNTGG 1 cut(s) 198
XapI RAATTY 1 cut(s) 172
XcmI CCANNNNNNNNNTGG 1 cut(s) 97
XmnI GAANNNNTTC 1 cut(s) 294
XspI CTAG 2 cut(s) 165, 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.