Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001106

Physical Location & Seq

Genomic Coordinates Forward (+)

1514942 .. 1515646

Gene Structure 705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g02500.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGCTTCCACTTCCAAGCTCTTCTTCCTCATAGCTCTATTGGCCGTGTCCATTCCATACATGGCCAGCAGCTCTCGTCCTTTGATGAACAACCCGCAAATAGGCTCGAACCCCCGGAACCTTGCAAGCAGGTTGAATCTCGATGAAGAATCATCAAACTGTTGGGACGCTTTGCTTCAAATCCATGCGTGCAGCGGTGAGGTTATCTTGTTTTTCTTCAATGGTGAGGTTTACTTGGGGCATAGCTGCTGTGAAGCCATTCGGACGATAGAGCATCAGTGTTGGCCTGCCTTGCTTGGCACGCTGGGGTTTACCACACAAGAGACTGATGTACTCAAAGGTTACTGCGATAAAGAAGCTCAAATTCATTCTCCTCCGCCTCCACCATCCCGGGCCACTCTTCATTCTCCTCCGCCTCCACTGTCCCCGGCCACCCTCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prolamin_like

Protein Analysis

148

Amino Acids

16.01

Weight (kDa)

5.63

Isoelectric Point (pI)

61.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prolamin_like	PF05617	53 - 117	3.2e-18	Prolamin-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76750
fragaria_vesca	FvH4_2g13390 FvH4_2g13400 FvH4_2g18700 FvH4_2g18870 FvH4_2g18880 FvH4_2g18910 FvH4_5g02500
malus_domestica	MD10G1029400.v1.1
prunus_persica	Prupe.8G031900_v2.0.a1 Prupe.8G032300_v2.0.a1 Prupe.8G034300_v2.0.a1 Prupe.8G034800_v2.0.a1 Prupe.8G053400_v2.0.a1 Prupe.I003300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0274951 RchiOBHm_Chr6g0284691 RchiOBHm_Chr6g0284701 RchiOBHm_Chr7g0197601
rosa_laevigata	RLG00000003923 RLG00000012730 RLG00000012731 RLG00000013506
rosa_multiflora	Rmu_co8247145.1_g000001 Rmu_sc0007474.1_g000008 Rmu_sc0007474.1_g000014 Rmu_sc0007474.1_g000019 Rmu_sc0009490.1_g000002
rosa_roxburghii	Rroxscaffold_7G00184470 Rroxscaffold_7G00184480
rosa_rugosa	Rorug06G0086700 Rorug06G0165500 Rorug06G0165600 Rorug07G0041800.1
rosa_samantha	Rh6AG201400 Rh6AG278500 Rh6AG278600 Rh6AG278700 Rh6BG205000 Rh6BG278400 Rh6BG278500 Rh6BG278800 Rh6CG206400 Rh6CG280800 Rh6CG281000 Rh6CG281100 Rh6DG196500 Rh6DG273500 Rh6DG273600 Rh6DG273700 Rh7AG166200 Rh7BG168300 Rh7CG174600 Rh7DG167900
rosa_wichuraiana	Rw6G017520 Rw6G023930 Rw6G023950 Rw6G023960 Rw7G014470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	120
AciI	CCGC	4 cut(s)	95, 195, 377, 413
AcoI	YGGCCR	3 cut(s)	42, 63, 429
AcsI	RAATTY	1 cut(s)	363
AfaI	GTAC	1 cut(s)	333
AfiI	CCNNNNNNNGG	1 cut(s)	101
AgsI	TTSAA	3 cut(s)	136, 179, 220
AjuI	GAANNNNNNNTTGG	2 cut(s)	8, 40
AluBI	AGCT	5 cut(s)	19, 35, 72, 246, 359
AluI	AGCT	5 cut(s)	19, 35, 72, 246, 359
Alw26I	GTCTC	1 cut(s)	317
Ama87I	CYCGRG	1 cut(s)	390
AoxI	GGCC	5 cut(s)	42, 63, 284, 393, 429
ApeKI	GCWGC	3 cut(s)	69, 192, 246
ApoI	RAATTY	1 cut(s)	363
Asp700I	GAANNNNTTC	1 cut(s)	258
AspS9I	GGNCC	1 cut(s)	393
AsuC2I	CCSGG	4 cut(s)	115, 391, 392, 428
AsuHPI	GGTGA	2 cut(s)	209, 236
AvaI	CYCGRG	1 cut(s)	390
BalI	TGGCCA	1 cut(s)	65
BbvI	GCAGC	3 cut(s)	81, 204, 233
BccI	CCATC	1 cut(s)	394
BceAI	ACGGC	1 cut(s)	29
BcnI	CCSGG	4 cut(s)	115, 391, 392, 428
BcoDI	GTCTC	1 cut(s)	317
BfuAI	ACCTGC	1 cut(s)	120
BisI	GCNGC	3 cut(s)	70, 193, 247
BlsI	GCNGC	3 cut(s)	71, 194, 248
Bme1390I	CCNGG	4 cut(s)	115, 391, 392, 428
BmeT110I	CYCGRG	1 cut(s)	390
BmgT120I	GGNCC	1 cut(s)	393
BmiI	GGNNCC	1 cut(s)	119
BmrFI	CCNGG	4 cut(s)	115, 391, 392, 428
BmsI	GCATC	1 cut(s)	283
BpuMI	CCSGG	4 cut(s)	115, 391, 392, 428
BsaJI	CCNNGG	3 cut(s)	113, 390, 426
Bsc4I	CCNNNNNNNGG	1 cut(s)	101
BseDI	CCNNGG	3 cut(s)	113, 390, 426
BseGI	GGATG	1 cut(s)	386
BseLI	CCNNNNNNNGG	1 cut(s)	101
BseRI	GAGGAG	2 cut(s)	363, 399
BseXI	GCAGC	3 cut(s)	81, 204, 233
BseYI	CCCAGC	1 cut(s)	304
BsgI	GTGCAG	1 cut(s)	211
BshFI	GGCC	5 cut(s)	44, 65, 286, 395, 431
BsiHKCI	CYCGRG	1 cut(s)	390
BsiSI	CCGG	3 cut(s)	115, 391, 428
BslFI	GGGAC	2 cut(s)	179, 409
BslI	CCNNNNNNNGG	1 cut(s)	101
BsmAI	GTCTC	1 cut(s)	317
BsmFI	GGGAC	2 cut(s)	179, 409
BsnI	GGCC	5 cut(s)	44, 65, 286, 395, 431
BsoBI	CYCGRG	1 cut(s)	390
BspACI	CCGC	4 cut(s)	95, 195, 377, 413
BspANI	GGCC	5 cut(s)	44, 65, 286, 395, 431
BspLI	GGNNCC	1 cut(s)	119
BspMI	ACCTGC	1 cut(s)	120
BspQI	GCTCTTC	1 cut(s)	26
BssECI	CCNNGG	3 cut(s)	113, 390, 426
Bst4CI	ACNGT	2 cut(s)	161, 423
Bst6I	CTCTTC	2 cut(s)	26, 405
BstC8I	GCNNGC	5 cut(s)	67, 127, 190, 288, 302
BstDEI	CTNAG	1 cut(s)	437
BstF5I	GGATG	1 cut(s)	386
BstMAI	GTCTC	1 cut(s)	317
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 292, 301
BstSCI	CCNGG	4 cut(s)	113, 389, 390, 426
BstV1I	GCAGC	3 cut(s)	81, 204, 233
BsuRI	GGCC	5 cut(s)	44, 65, 286, 395, 431
BtsCI	GGATG	1 cut(s)	386
BtsIMutI	CAGTG	2 cut(s)	284, 419
BveI	ACCTGC	1 cut(s)	120
Cac8I	GCNNGC	5 cut(s)	67, 127, 190, 288, 302
Cfr13I	GGNCC	1 cut(s)	393
Cfr9I	CCCGGG	1 cut(s)	390
CseI	GACGC	1 cut(s)	176
Csp6I	GTAC	1 cut(s)	332
CviAII	CATG	2 cut(s)	61, 185
CviQI	GTAC	1 cut(s)	332
DdeI	CTNAG	1 cut(s)	437
EaeI	YGGCCR	3 cut(s)	42, 63, 429
Eam1104I	CTCTTC	2 cut(s)	26, 405
EarI	CTCTTC	2 cut(s)	26, 405
EciI	GGCGGA	2 cut(s)	366, 402
Eco88I	CYCGRG	1 cut(s)	390
FaeI	CATG	2 cut(s)	64, 188
FaiI	YATR	5 cut(s)	32, 58, 62, 186, 243
FalI	AAGNNNNNCTT	2 cut(s)	8, 40
FaqI	GGGAC	2 cut(s)	179, 409
FatI	CATG	2 cut(s)	60, 184
FauI	CCCGC	1 cut(s)	102
Fnu4HI	GCNGC	3 cut(s)	70, 193, 247
FokI	GGATG	1 cut(s)	373
Fsp4HI	GCNGC	3 cut(s)	70, 193, 247
GluI	GCNGC	3 cut(s)	70, 193, 247
GsaI	CCCAGC	1 cut(s)	308
HaeIII	GGCC	5 cut(s)	44, 65, 286, 395, 431
HapII	CCGG	3 cut(s)	115, 391, 428
HgaI	GACGC	1 cut(s)	176
Hin1II	CATG	2 cut(s)	64, 188
HinfI	GANTC	2 cut(s)	136, 149
HpaII	CCGG	3 cut(s)	115, 391, 428
HphI	GGTGA	2 cut(s)	209, 236
Hpy166II	GTNNAC	2 cut(s)	232, 312
Hpy188I	TCNGA	1 cut(s)	264
Hpy188III	TCNNGA	1 cut(s)	140
Hpy8I	GTNNAC	2 cut(s)	232, 312
HpyCH4III	ACNGT	2 cut(s)	161, 423
HpyCH4V	TGCA	2 cut(s)	125, 192
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 292, 301
HpyF3I	CTNAG	1 cut(s)	437
Hsp92II	CATG	2 cut(s)	64, 188
LguI	GCTCTTC	1 cut(s)	26
LpnPI	CCDG	6 cut(s)	79, 115, 128, 290, 300, 404
Lsp1109I	GCAGC	3 cut(s)	81, 204, 233
LweI	GCATC	1 cut(s)	283
MaeIII	GTNAC	1 cut(s)	341
MboII	GAAGA	5 cut(s)	13, 16, 158, 208, 392
MlsI	TGGCCA	1 cut(s)	65
MluCI	AATT	1 cut(s)	363
MluNI	TGGCCA	1 cut(s)	65
MnlI	CCTC	7 cut(s)	38, 193, 220, 384, 390, 420, 426
Mox20I	TGGCCA	1 cut(s)	65
MroXI	GAANNNNTTC	1 cut(s)	258
MscI	TGGCCA	1 cut(s)	65
Msp20I	TGGCCA	1 cut(s)	65
MspA1I	CMGCKG	1 cut(s)	195
MspI	CCGG	3 cut(s)	115, 391, 428
MspR9I	CCNGG	4 cut(s)	115, 391, 392, 428
MwoI	GCNNNNNNNGC	3 cut(s)	41, 292, 301
NciI	CCSGG	4 cut(s)	115, 391, 392, 428
NlaIII	CATG	2 cut(s)	64, 188
NlaIV	GGNNCC	1 cut(s)	119
PciSI	GCTCTTC	1 cut(s)	26
PdmI	GAANNNNTTC	1 cut(s)	258
PfeI	GAWTC	2 cut(s)	136, 149
PkrI	GCNGC	3 cut(s)	71, 194, 248
PspFI	CCCAGC	1 cut(s)	304
PspN4I	GGNNCC	1 cut(s)	119
PspPI	GGNCC	1 cut(s)	393
RsaI	GTAC	1 cut(s)	333
RsaNI	GTAC	1 cut(s)	332
SapI	GCTCTTC	1 cut(s)	26
SatI	GCNGC	3 cut(s)	70, 193, 247
Sau96I	GGNCC	1 cut(s)	393
ScrFI	CCNGG	4 cut(s)	115, 391, 392, 428
SfaNI	GCATC	1 cut(s)	283
SmaI	CCCGGG	1 cut(s)	392
Sse9I	AATT	1 cut(s)	363
SsiI	CCGC	4 cut(s)	95, 195, 377, 413
StyD4I	CCNGG	4 cut(s)	113, 389, 390, 426
TaaI	ACNGT	2 cut(s)	161, 423
TaqI	TCGA	2 cut(s)	107, 141
TasI	AATT	1 cut(s)	363
TatI	WGTACW	1 cut(s)	331
TfiI	GAWTC	2 cut(s)	136, 149
TscAI	CASTG	2 cut(s)	284, 426
TseI	GCWGC	3 cut(s)	69, 192, 246
TspDTI	ATGAA	4 cut(s)	101, 159, 356, 392
TspMI	CCCGGG	1 cut(s)	390
TspRI	CASTG	2 cut(s)	284, 426
XapI	RAATTY	1 cut(s)	363
XcmI	CCANNNNNNNNNTGG	1 cut(s)	58
XmaI	CCCGGG	1 cut(s)	390
XmnI	GAANNNNTTC	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.