FvH4_2g18870

Egg cell-secreted protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0001106
Physical Location & Seq
Forward (+)
16092333 .. 16092749
417 bp
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UTR
Exon/CDS
Intron
FvH4_2g18870.t1

Sequence Viewer

Length: 417 bp
ATGGCTTCCACTTCTAAGCTTTTCCTTCTCACAGCTCTGCTTGTTCTGACCATGCCATTCATGGTCAGTAGTACTTCTCGACCTTTGAATTACCCAACGAGGAGCAAATCAAACCTTGCAGCCAGATTGAAATTGGATGAAGAATCATCAACCTGCTGGGAGTCTTTATTTCAGTTCCAGGCATGCAGTAAAGAGGTTGTGTTGTTCTTCCTCAATGGTGAGACTAGCTTAGGAGAAGGCTGTTGCAAAGCCCTTAGCACCATTGAGCACCTGTGTTGGCCAGCCTTGCTCGGATCTCTAGGGCTTACCACGGAAGAGACTGATATACTAAAGGGTTACTGCGACGAAGCTGCTCAAATCCAATCACCTCCGACTTCGCCTTCACCACCATCTGTTCATCAGCCTACTGGAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

139

Amino Acids

14.96

Weight (kDa)

5.07

Isoelectric Point (pI)

59.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prolamin_like PF05617 51 - 115 5.1e-17 Prolamin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 161
AclWI GGATC 1 cut(s) 301
AcoI YGGCCR 1 cut(s) 278
AfaI GTAC 1 cut(s) 73
AgsI TTSAA 2 cut(s) 88, 130
AjnI CCWGG 1 cut(s) 177
AluBI AGCT 4 cut(s) 19, 35, 228, 350
AluI AGCT 4 cut(s) 19, 35, 228, 350
Alw21I GWGCWC 1 cut(s) 270
Alw26I GTCTC 2 cut(s) 215, 311
AlwI GGATC 1 cut(s) 301
AoxI GGCC 1 cut(s) 278
ApeKI GCWGC 2 cut(s) 119, 350
AsuHPI GGTGA 3 cut(s) 230, 357, 375
BalI TGGCCA 1 cut(s) 280
Bbv12I GWGCWC 1 cut(s) 270
BbvI GCAGC 2 cut(s) 131, 337
BccI CCATC 1 cut(s) 397
BcgI CGANNNNNNTGC 2 cut(s) 332, 366
BciT130I CCWGG 1 cut(s) 179
BcoDI GTCTC 2 cut(s) 215, 311
BfaI CTAG 2 cut(s) 225, 299
BfuAI ACCTGC 1 cut(s) 161
BisI GCNGC 2 cut(s) 120, 351
BlsI GCNGC 2 cut(s) 121, 352
BmcAI AGTACT 1 cut(s) 73
Bme1390I CCNGG 1 cut(s) 179
BmrFI CCNGG 1 cut(s) 179
Bpu10I CCTNAGC 2 cut(s) 229, 254
BsaJI CCNNGG 1 cut(s) 309
Bse1I ACTGG 1 cut(s) 412
BseBI CCWGG 1 cut(s) 179
BseDI CCNNGG 1 cut(s) 309
BseGI GGATG 1 cut(s) 142
BseNI ACTGG 1 cut(s) 412
BseRI GAGGAG 1 cut(s) 115
BseXI GCAGC 2 cut(s) 131, 337
BseYI CCCAGC 1 cut(s) 156
BshFI GGCC 1 cut(s) 280
BsiHKAI GWGCWC 1 cut(s) 270
BsmAI GTCTC 2 cut(s) 215, 311
BsnI GGCC 1 cut(s) 280
Bsp1286I GDGCHC 1 cut(s) 270
Bsp143I GATC 1 cut(s) 293
BspANI GGCC 1 cut(s) 280
BspMI ACCTGC 1 cut(s) 161
BspPI GGATC 1 cut(s) 301
BsrI ACTGG 1 cut(s) 412
BssECI CCNNGG 1 cut(s) 309
BssMI GATC 1 cut(s) 293
Bst2UI CCWGG 1 cut(s) 179
Bst6I CTCTTC 1 cut(s) 309
BstC8I GCNNGC 2 cut(s) 184, 282
BstDEI CTNAG 3 cut(s) 15, 229, 254
BstDSI CCRYGG 1 cut(s) 309
BstF5I GGATG 1 cut(s) 142
BstKTI GATC 1 cut(s) 296
BstMAI GTCTC 2 cut(s) 215, 311
BstMBI GATC 1 cut(s) 293
BstMWI GCNNNNNNNGC 1 cut(s) 286
BstNI CCWGG 1 cut(s) 179
BstNSI RCATGY 1 cut(s) 186
BstSCI CCNGG 1 cut(s) 177
BstV1I GCAGC 2 cut(s) 131, 337
BstX2I RGATCY 1 cut(s) 293
BstYI RGATCY 1 cut(s) 293
BsuRI GGCC 1 cut(s) 280
BtgI CCRYGG 1 cut(s) 309
BtsCI GGATG 1 cut(s) 142
BveI ACCTGC 1 cut(s) 161
Cac8I GCNNGC 2 cut(s) 184, 282
Csp6I GTAC 1 cut(s) 72
CviAII CATG 3 cut(s) 52, 61, 183
CviQI GTAC 1 cut(s) 72
DdeI CTNAG 3 cut(s) 15, 229, 254
DpnI GATC 1 cut(s) 295
DpnII GATC 1 cut(s) 293
EaeI YGGCCR 1 cut(s) 278
Eam1104I CTCTTC 1 cut(s) 309
EarI CTCTTC 1 cut(s) 309
EcoRII CCWGG 1 cut(s) 177
FaeI CATG 3 cut(s) 55, 64, 186
FaiI YATR 4 cut(s) 53, 62, 184, 326
FatI CATG 3 cut(s) 51, 60, 182
Fnu4HI GCNGC 2 cut(s) 120, 351
FokI GGATG 1 cut(s) 149
Fsp4HI GCNGC 2 cut(s) 120, 351
FspBI CTAG 2 cut(s) 225, 299
GluI GCNGC 2 cut(s) 120, 351
GsaI CCCAGC 1 cut(s) 160
HaeIII GGCC 1 cut(s) 280
Hin1II CATG 3 cut(s) 55, 64, 186
HindIII AAGCTT 1 cut(s) 17
HinfI GANTC 2 cut(s) 143, 161
HphI GGTGA 3 cut(s) 230, 357, 375
Hpy188I TCNGA 3 cut(s) 48, 293, 372
Hpy188III TCNNGA 1 cut(s) 78
Hpy99I CGWCG 1 cut(s) 347
HpyAV CCTTC 3 cut(s) 35, 230, 390
HpyCH4V TGCA 3 cut(s) 119, 186, 246
HpyF10VI GCNNNNNNNGC 1 cut(s) 286
HpyF3I CTNAG 3 cut(s) 15, 229, 254
Hsp92II CATG 3 cut(s) 55, 64, 186
Kzo9I GATC 1 cut(s) 293
LmnI GCTCC 1 cut(s) 102
LpnPI CCDG 8 cut(s) 136, 142, 164, 166, 191, 284, 294, 393
Lsp1109I GCAGC 2 cut(s) 131, 337
MaeI CTAG 2 cut(s) 225, 299
MaeIII GTNAC 1 cut(s) 335
MalI GATC 1 cut(s) 295
MboI GATC 1 cut(s) 293
MboII GAAGA 3 cut(s) 152, 199, 326
MflI RGATCY 1 cut(s) 293
MhlI GDGCHC 1 cut(s) 270
MlsI TGGCCA 1 cut(s) 280
MluCI AATT 3 cut(s) 88, 131, 412
MluNI TGGCCA 1 cut(s) 280
MlyI GAGTC 1 cut(s) 170
MmeI TCCRAC 1 cut(s) 395
MnlI CCTC 4 cut(s) 93, 187, 221, 378
Mox20I TGGCCA 1 cut(s) 280
MscI TGGCCA 1 cut(s) 280
MseI TTAA 1 cut(s) 415
Msp20I TGGCCA 1 cut(s) 280
MspR9I CCNGG 1 cut(s) 179
MvaI CCWGG 1 cut(s) 179
MwoI GCNNNNNNNGC 1 cut(s) 286
NdeII GATC 1 cut(s) 293
NlaIII CATG 3 cut(s) 55, 64, 186
NspI RCATGY 1 cut(s) 186
PaeI GCATGC 1 cut(s) 186
PfeI GAWTC 1 cut(s) 143
PkrI GCNGC 2 cut(s) 121, 352
PleI GAGTC 1 cut(s) 169
PpsI GAGTC 1 cut(s) 169
Psp6I CCWGG 1 cut(s) 177
PspFI CCCAGC 1 cut(s) 156
PspGI CCWGG 1 cut(s) 177
PsuI RGATCY 1 cut(s) 293
RsaI GTAC 1 cut(s) 73
RsaNI GTAC 1 cut(s) 72
SaqAI TTAA 1 cut(s) 415
SatI GCNGC 2 cut(s) 120, 351
Sau3AI GATC 1 cut(s) 293
ScaI AGTACT 1 cut(s) 73
SchI GAGTC 1 cut(s) 170
ScrFI CCNGG 1 cut(s) 179
SduI GDGCHC 1 cut(s) 270
SphI GCATGC 1 cut(s) 186
Sse9I AATT 3 cut(s) 88, 131, 412
SspMI CTAG 2 cut(s) 225, 299
StyD4I CCNGG 1 cut(s) 177
TaqI TCGA 1 cut(s) 79
TasI AATT 3 cut(s) 88, 131, 412
TatI WGTACW 1 cut(s) 71
TfiI GAWTC 1 cut(s) 143
Tru1I TTAA 1 cut(s) 415
Tru9I TTAA 1 cut(s) 415
TseI GCWGC 2 cut(s) 119, 350
TspDTI ATGAA 3 cut(s) 49, 153, 386
TspGWI ACGGA 1 cut(s) 326
XceI RCATGY 1 cut(s) 186
XcmI CCANNNNNNNNNTGG 2 cut(s) 58, 130
XspI CTAG 2 cut(s) 225, 299
ZrmI AGTACT 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.