Rh7CG174600

Egg cell-secreted protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0001106
Physical Location & Seq
Reverse (-)
14939798 .. 14940145
348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG174600.1

Sequence Viewer

Length: 348 bp
ATGGCTTCCAGTTCCAATCTCTTCCTTCTCATAGCTCTTTTGGCCATGTACCCCCGGAACCTTGCAACCAGGTTGAATCTGGTTGGAGAATCATCAAACTGCTGGGACTCTCTGCTTCAGCTCCATGCATGTAGTGGCGAAGTTATCTTGTTTTTCTTCAATGGTGAGACTTACTTGGGTCATAGCTGTTGTGAAGCCATTTGGACGATTGAGCATCAGTGTTGGCCTGCCTTGCTCGGCACGCTAGGGTTTACCACGCAAGAGACGGATGTACTCAAAGGTTATTGCGATAAAGCCGATCAAATTCATTCTCCTCCGTCTCCACCATCCCCAGCCACCCTCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

115

Amino Acids

12.62

Weight (kDa)

4.85

Isoelectric Point (pI)

55.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prolamin_like PF05617 33 - 97 2.7e-18 Prolamin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 42
AcsI RAATTY 1 cut(s) 303
AcuI CTGAAG 1 cut(s) 101
AfaI GTAC 2 cut(s) 50, 273
AgsI TTSAA 2 cut(s) 76, 160
AjnI CCWGG 1 cut(s) 68
AluBI AGCT 3 cut(s) 35, 121, 186
AluI AGCT 3 cut(s) 35, 121, 186
Alw26I GTCTC 3 cut(s) 161, 257, 324
AoxI GGCC 2 cut(s) 42, 224
ApoI RAATTY 1 cut(s) 303
AsuC2I CCSGG 1 cut(s) 55
AsuHPI GGTGA 1 cut(s) 176
BalI TGGCCA 1 cut(s) 44
BccI CCATC 1 cut(s) 334
BciT130I CCWGG 1 cut(s) 70
BcnI CCSGG 1 cut(s) 55
BcoDI GTCTC 3 cut(s) 161, 257, 324
BfaI CTAG 1 cut(s) 245
Bme1390I CCNGG 2 cut(s) 55, 70
BmiI GGNNCC 1 cut(s) 59
BmrFI CCNGG 2 cut(s) 55, 70
BmsI GCATC 1 cut(s) 223
BpuMI CCSGG 1 cut(s) 55
BsaJI CCNNGG 1 cut(s) 53
Bse1I ACTGG 1 cut(s) 9
BseBI CCWGG 1 cut(s) 70
BseDI CCNNGG 1 cut(s) 53
BseGI GGATG 2 cut(s) 274, 326
BseNI ACTGG 1 cut(s) 9
BseRI GAGGAG 1 cut(s) 303
BseYI CCCAGC 2 cut(s) 102, 331
BshFI GGCC 2 cut(s) 44, 226
BsiSI CCGG 1 cut(s) 55
BslFI GGGAC 1 cut(s) 119
BsmAI GTCTC 3 cut(s) 161, 257, 324
BsmBI CGTCTC 2 cut(s) 257, 324
BsmFI GGGAC 1 cut(s) 119
BsnI GGCC 2 cut(s) 44, 226
Bsp143I GATC 1 cut(s) 298
BspANI GGCC 2 cut(s) 44, 226
BspLI GGNNCC 1 cut(s) 59
BsrI ACTGG 1 cut(s) 9
BssECI CCNNGG 1 cut(s) 53
BssMI GATC 1 cut(s) 298
Bst2UI CCWGG 1 cut(s) 70
Bst6I CTCTTC 1 cut(s) 26
BstC8I GCNNGC 2 cut(s) 228, 242
BstF5I GGATG 2 cut(s) 274, 326
BstKTI GATC 1 cut(s) 301
BstMAI GTCTC 3 cut(s) 161, 257, 324
BstMBI GATC 1 cut(s) 298
BstMWI GCNNNNNNNGC 3 cut(s) 41, 232, 241
BstNI CCWGG 1 cut(s) 70
BstNSI RCATGY 1 cut(s) 132
BstSCI CCNGG 2 cut(s) 53, 68
BsuRI GGCC 2 cut(s) 44, 226
BtsCI GGATG 2 cut(s) 274, 326
BtsIMutI CAGTG 1 cut(s) 224
Cac8I GCNNGC 2 cut(s) 228, 242
CsiI ACCWGGT 1 cut(s) 68
Csp6I GTAC 2 cut(s) 49, 272
CviAII CATG 3 cut(s) 46, 125, 129
CviJI RGCY 9 cut(s) 5, 35, 44, 121, 186, 197, 226, 296, 335
CviKI_1 RGCY 9 cut(s) 5, 35, 44, 121, 186, 197, 226, 296, 335
CviQI GTAC 2 cut(s) 49, 272
DpnI GATC 1 cut(s) 300
DpnII GATC 1 cut(s) 298
EaeI YGGCCR 1 cut(s) 42
Eam1104I CTCTTC 1 cut(s) 26
EarI CTCTTC 1 cut(s) 26
Eco57I CTGAAG 1 cut(s) 101
EcoRII CCWGG 1 cut(s) 68
EcoT22I ATGCAT 1 cut(s) 130
Esp3I CGTCTC 2 cut(s) 257, 324
FaeI CATG 3 cut(s) 49, 128, 132
FaiI YATR 5 cut(s) 32, 47, 126, 130, 183
FaqI GGGAC 1 cut(s) 119
FatI CATG 3 cut(s) 45, 124, 128
FokI GGATG 2 cut(s) 281, 313
FspBI CTAG 1 cut(s) 245
GsaI CCCAGC 2 cut(s) 106, 335
HaeIII GGCC 2 cut(s) 44, 226
HapII CCGG 1 cut(s) 55
Hin1II CATG 3 cut(s) 49, 128, 132
HinfI GANTC 3 cut(s) 76, 89, 107
HpaII CCGG 1 cut(s) 55
HphI GGTGA 1 cut(s) 176
Hpy166II GTNNAC 1 cut(s) 252
Hpy8I GTNNAC 1 cut(s) 252
HpyAV CCTTC 1 cut(s) 35
HpyCH4V TGCA 2 cut(s) 65, 128
HpyF10VI GCNNNNNNNGC 3 cut(s) 41, 232, 241
Hsp92II CATG 3 cut(s) 49, 128, 132
Kzo9I GATC 1 cut(s) 298
LmnI GCTCC 1 cut(s) 126
LpnPI CCDG 7 cut(s) 22, 55, 65, 68, 82, 88, 240
LweI GCATC 1 cut(s) 223
MabI ACCWGGT 1 cut(s) 68
MaeI CTAG 1 cut(s) 245
MalI GATC 1 cut(s) 300
MboI GATC 1 cut(s) 298
MboII GAAGA 2 cut(s) 13, 148
MlsI TGGCCA 1 cut(s) 44
MluCI AATT 1 cut(s) 303
MluNI TGGCCA 1 cut(s) 44
MlyI GAGTC 1 cut(s) 101
MmeI TCCRAC 1 cut(s) 64
MnlI CCTC 1 cut(s) 324
Mox20I TGGCCA 1 cut(s) 44
Mph1103I ATGCAT 1 cut(s) 130
MscI TGGCCA 1 cut(s) 44
Msp20I TGGCCA 1 cut(s) 44
MspI CCGG 1 cut(s) 55
MspR9I CCNGG 2 cut(s) 55, 70
MvaI CCWGG 1 cut(s) 70
MwoI GCNNNNNNNGC 3 cut(s) 41, 232, 241
NciI CCSGG 1 cut(s) 55
NdeII GATC 1 cut(s) 298
NlaIII CATG 3 cut(s) 49, 128, 132
NlaIV GGNNCC 1 cut(s) 59
NmeAIII GCCGAG 1 cut(s) 216
NsiI ATGCAT 1 cut(s) 130
NspI RCATGY 1 cut(s) 132
PfeI GAWTC 2 cut(s) 76, 89
PleI GAGTC 1 cut(s) 101
PpsI GAGTC 1 cut(s) 101
Psp6I CCWGG 1 cut(s) 68
PspFI CCCAGC 2 cut(s) 102, 331
PspGI CCWGG 1 cut(s) 68
PspN4I GGNNCC 1 cut(s) 59
RsaI GTAC 2 cut(s) 50, 273
RsaNI GTAC 2 cut(s) 49, 272
Sau3AI GATC 1 cut(s) 298
SchI GAGTC 1 cut(s) 101
ScrFI CCNGG 2 cut(s) 55, 70
SetI ASST 6 cut(s) 37, 63, 74, 123, 188, 283
SexAI ACCWGGT 1 cut(s) 68
SfaNI GCATC 1 cut(s) 223
Sse9I AATT 1 cut(s) 303
SspMI CTAG 1 cut(s) 245
StyD4I CCNGG 2 cut(s) 53, 68
TasI AATT 1 cut(s) 303
TatI WGTACW 1 cut(s) 271
TfiI GAWTC 2 cut(s) 76, 89
TscAI CASTG 1 cut(s) 224
TspDTI ATGAA 1 cut(s) 296
TspGWI ACGGA 2 cut(s) 281, 306
TspRI CASTG 1 cut(s) 224
XapI RAATTY 1 cut(s) 303
XceI RCATGY 1 cut(s) 132
XcmI CCANNNNNNNNNTGG 2 cut(s) 76, 131
XspI CTAG 1 cut(s) 245
Zsp2I ATGCAT 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.