Rw6G023960

Egg cell-secreted protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0001106
Physical Location & Seq
Forward (+)
46746681 .. 46747103
423 bp
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UTR
Exon/CDS
Intron
Rw6G023960.1

Sequence Viewer

Length: 423 bp
ATGGCCGACACTTCCAAGCTTTTTCTTCTCACGGCTCTTCTAGCTCTGACTATGCCATTCATGGCTAGTAGCTTTCGGCCTTTGAATAACCGAATTGACTCTAAATCGAATCTTGCAGCCAGGTTGAAATTGGTTGGAAAATCATCAATACAGTTGCAGGCATGTAGCAGTCAGGTAGTTCTGTTCCTTCTCAATGGTGAGACTTCCTTGGGACATGGTTGCTGCATAGCCATTCGGACCATTGAGCACCAGTGTTGGCCTGCCCTGCTTGGCTCCCTAGGGTTTTCCGCAGAAGAGGTTGACATTCTCAAAGGTTTTTGCGATCAGGCCATTCAACTCGAAATCTCACCGCCGCCACGACCACCATCCATTGATGAGGCTACTGGAAAAGTTGTTCCTGATATGAAGAAGTTTATTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

140

Amino Acids

15.14

Weight (kDa)

7.63

Isoelectric Point (pI)

39.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prolamin_like PF05617 51 - 108 2e-13 Prolamin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 288, 350, 353
AcoI YGGCCR 1 cut(s) 3
AgsI TTSAA 3 cut(s) 85, 127, 335
AjnI CCWGG 1 cut(s) 119
AloI GAACNNNNNNTCC 2 cut(s) 378, 410
AluBI AGCT 3 cut(s) 19, 44, 72
AluI AGCT 3 cut(s) 19, 44, 72
Alw21I GWGCWC 1 cut(s) 249
Alw26I GTCTC 1 cut(s) 194
AoxI GGCC 4 cut(s) 3, 77, 257, 327
ApeKI GCWGC 2 cut(s) 116, 222
AspA2I CCTAGG 1 cut(s) 277
AspS9I GGNCC 1 cut(s) 237
AsuHPI GGTGA 2 cut(s) 209, 339
AvaII GGWCC 1 cut(s) 237
AvrII CCTAGG 1 cut(s) 277
Bbv12I GWGCWC 1 cut(s) 249
BbvI GCAGC 2 cut(s) 128, 209
BccI CCATC 1 cut(s) 373
BceAI ACGGC 1 cut(s) 48
BciT130I CCWGG 1 cut(s) 121
BcoDI GTCTC 1 cut(s) 194
BfaI CTAG 3 cut(s) 41, 66, 278
BisI GCNGC 3 cut(s) 117, 223, 353
BlnI CCTAGG 1 cut(s) 277
BlsI GCNGC 3 cut(s) 118, 224, 354
Bme1390I CCNGG 1 cut(s) 121
Bme18I GGWCC 1 cut(s) 237
BmgT120I GGNCC 1 cut(s) 237
BmiI GGNNCC 1 cut(s) 274
BmrFI CCNGG 1 cut(s) 121
BsaJI CCNNGG 2 cut(s) 207, 277
Bse1I ACTGG 2 cut(s) 250, 388
BseBI CCWGG 1 cut(s) 121
BseDI CCNNGG 2 cut(s) 207, 277
BseGI GGATG 1 cut(s) 365
BseNI ACTGG 2 cut(s) 250, 388
BseXI GCAGC 2 cut(s) 128, 209
BshFI GGCC 4 cut(s) 5, 79, 259, 329
BsiHKAI GWGCWC 1 cut(s) 249
BslFI GGGAC 1 cut(s) 225
BsmAI GTCTC 1 cut(s) 194
BsmFI GGGAC 1 cut(s) 225
BsnI GGCC 4 cut(s) 5, 79, 259, 329
Bsp1286I GDGCHC 1 cut(s) 249
Bsp143I GATC 1 cut(s) 322
BspACI CCGC 3 cut(s) 288, 350, 353
BspANI GGCC 4 cut(s) 5, 79, 259, 329
BspLI GGNNCC 1 cut(s) 274
BspQI GCTCTTC 1 cut(s) 42
BsrI ACTGG 2 cut(s) 250, 388
BssECI CCNNGG 2 cut(s) 207, 277
BssMI GATC 1 cut(s) 322
BssT1I CCWWGG 2 cut(s) 207, 277
Bst2UI CCWGG 1 cut(s) 121
Bst4CI ACNGT 1 cut(s) 153
Bst6I CTCTTC 2 cut(s) 42, 288
BstC8I GCNNGC 2 cut(s) 159, 261
BstF5I GGATG 1 cut(s) 365
BstKTI GATC 1 cut(s) 325
BstMAI GTCTC 1 cut(s) 194
BstMBI GATC 1 cut(s) 322
BstMWI GCNNNNNNNGC 2 cut(s) 41, 265
BstNI CCWGG 1 cut(s) 121
BstNSI RCATGY 1 cut(s) 165
BstSCI CCNGG 1 cut(s) 119
BstV1I GCAGC 2 cut(s) 128, 209
BsuRI GGCC 4 cut(s) 5, 79, 259, 329
BtsCI GGATG 1 cut(s) 365
BtsIMutI CAGTG 1 cut(s) 257
Cac8I GCNNGC 2 cut(s) 159, 261
Cfr13I GGNCC 1 cut(s) 237
CviAII CATG 3 cut(s) 61, 162, 215
DpnI GATC 1 cut(s) 324
DpnII GATC 1 cut(s) 322
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 42, 288
EarI CTCTTC 2 cut(s) 42, 288
Eco130I CCWWGG 2 cut(s) 207, 277
Eco47I GGWCC 1 cut(s) 237
EcoRII CCWGG 1 cut(s) 119
EcoT14I CCWWGG 2 cut(s) 207, 277
ErhI CCWWGG 2 cut(s) 207, 277
FaeI CATG 3 cut(s) 64, 165, 218
FaiI YATR 6 cut(s) 53, 62, 163, 216, 227, 404
FaqI GGGAC 1 cut(s) 225
FatI CATG 3 cut(s) 60, 161, 214
Fnu4HI GCNGC 3 cut(s) 117, 223, 353
FokI GGATG 1 cut(s) 352
Fsp4HI GCNGC 3 cut(s) 117, 223, 353
FspBI CTAG 3 cut(s) 41, 66, 278
GluI GCNGC 3 cut(s) 117, 223, 353
HaeIII GGCC 4 cut(s) 5, 79, 259, 329
Hin1II CATG 3 cut(s) 64, 165, 218
HincII GTYRAC 1 cut(s) 301
HindII GTYRAC 1 cut(s) 301
HindIII AAGCTT 1 cut(s) 17
HinfI GANTC 2 cut(s) 98, 109
HphI GGTGA 2 cut(s) 209, 339
Hpy166II GTNNAC 1 cut(s) 301
Hpy188I TCNGA 2 cut(s) 48, 237
Hpy188III TCNNGA 1 cut(s) 398
Hpy8I GTNNAC 1 cut(s) 301
HpyAV CCTTC 1 cut(s) 197
HpyCH4III ACNGT 1 cut(s) 153
HpyCH4V TGCA 3 cut(s) 116, 157, 225
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 265
Hsp92II CATG 3 cut(s) 64, 165, 218
Kzo9I GATC 1 cut(s) 322
LguI GCTCTTC 1 cut(s) 42
LmnI GCTCC 1 cut(s) 278
Lsp1109I GCAGC 2 cut(s) 128, 209
MaeI CTAG 3 cut(s) 41, 66, 278
MalI GATC 1 cut(s) 324
MboI GATC 1 cut(s) 322
MboII GAAGA 4 cut(s) 17, 29, 305, 418
MhlI GDGCHC 1 cut(s) 249
MluCI AATT 2 cut(s) 93, 128
MlyI GAGTC 1 cut(s) 92
MmeI TCCRAC 1 cut(s) 115
MnlI CCTC 2 cut(s) 289, 370
MspR9I CCNGG 1 cut(s) 121
MvaI CCWGG 1 cut(s) 121
MwoI GCNNNNNNNGC 2 cut(s) 41, 265
NdeII GATC 1 cut(s) 322
NlaIII CATG 3 cut(s) 64, 165, 218
NlaIV GGNNCC 1 cut(s) 274
NspI RCATGY 1 cut(s) 165
PciSI GCTCTTC 1 cut(s) 42
PfeI GAWTC 1 cut(s) 109
PkrI GCNGC 3 cut(s) 118, 224, 354
PleI GAGTC 1 cut(s) 92
PpsI GAGTC 1 cut(s) 92
Psp6I CCWGG 1 cut(s) 119
PspGI CCWGG 1 cut(s) 119
PspN4I GGNNCC 1 cut(s) 274
PspPI GGNCC 1 cut(s) 237
SapI GCTCTTC 1 cut(s) 42
SatI GCNGC 3 cut(s) 117, 223, 353
Sau3AI GATC 1 cut(s) 322
Sau96I GGNCC 1 cut(s) 237
SchI GAGTC 1 cut(s) 92
ScrFI CCNGG 1 cut(s) 121
SduI GDGCHC 1 cut(s) 249
SetI ASST 7 cut(s) 21, 46, 74, 125, 177, 300, 316
SinI GGWCC 1 cut(s) 237
Sse9I AATT 2 cut(s) 93, 128
SsiI CCGC 3 cut(s) 288, 350, 353
SspMI CTAG 3 cut(s) 41, 66, 278
StyD4I CCNGG 1 cut(s) 119
StyI CCWWGG 2 cut(s) 207, 277
TaaI ACNGT 1 cut(s) 153
TaqI TCGA 2 cut(s) 107, 339
TasI AATT 2 cut(s) 93, 128
TauI GCSGC 1 cut(s) 355
TfiI GAWTC 1 cut(s) 109
TscAI CASTG 1 cut(s) 257
TseI GCWGC 2 cut(s) 116, 222
TspDTI ATGAA 2 cut(s) 49, 419
TspRI CASTG 1 cut(s) 257
VpaK11BI GGWCC 1 cut(s) 237
XceI RCATGY 1 cut(s) 165
XcmI CCANNNNNNNNNTGG 1 cut(s) 127
XmaJI CCTAGG 1 cut(s) 277
XspI CTAG 3 cut(s) 41, 66, 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.