Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001106

Physical Location & Seq

Genomic Coordinates Reverse (-)

32482067 .. 32482528

Gene Structure 462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013506

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGCCTTTAACACTTCCAACCTCTTCCTAACTCTCACTGCTCTCATTGCTCTGACCATGCCGTTCATGGCTTCTGCTTATCGAACCTTGGTGACGAATGACCCAACCGGATCAGACCCAAGCCTGGCAACTAGGTTGAATTTGGATGGAGAATCCTCCAACTGCTGGGATTCTTTGCTTCAGCTCCAGTCATGTAGCGGTGAGGCTATAATGTTTTTCTTGAATGGCCAGACTTCTTTGGGCGATGGATGTTGTGAAGCTATTCGGGTAATCGAGCACCAGTGCTGGCCTGCCTTGCTCGGCTCGCTAGGGTTTACCACGGAAGAGACTGATATTCTCGAAGGTTATTGCGACGAGGCTGAACAAACTCATCATTCTCCTCCGTCGATACCATCACCACCGTCCGTTTTTCATCCTAATAGAGCAGTCCATGTTCCTTATCAGGCTGATATGGCTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prolamin_like

Protein Analysis

154

Amino Acids

16.58

Weight (kDa)

4.32

Isoelectric Point (pI)

51.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prolamin_like	PF05617	54 - 118	4.8e-17	Prolamin-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76750
fragaria_vesca	FvH4_2g13390 FvH4_2g13400 FvH4_2g18700 FvH4_2g18870 FvH4_2g18880 FvH4_2g18910 FvH4_5g02500
malus_domestica	MD10G1029400.v1.1
prunus_persica	Prupe.8G031900_v2.0.a1 Prupe.8G032300_v2.0.a1 Prupe.8G034300_v2.0.a1 Prupe.8G034800_v2.0.a1 Prupe.8G053400_v2.0.a1 Prupe.I003300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0274951 RchiOBHm_Chr6g0284691 RchiOBHm_Chr6g0284701 RchiOBHm_Chr7g0197601
rosa_laevigata	RLG00000003923 RLG00000012730 RLG00000012731 RLG00000013506
rosa_multiflora	Rmu_co8247145.1_g000001 Rmu_sc0007474.1_g000008 Rmu_sc0007474.1_g000014 Rmu_sc0007474.1_g000019 Rmu_sc0009490.1_g000002
rosa_roxburghii	Rroxscaffold_7G00184470 Rroxscaffold_7G00184480
rosa_rugosa	Rorug06G0086700 Rorug06G0165500 Rorug06G0165600 Rorug07G0041800.1
rosa_samantha	Rh6AG201400 Rh6AG278500 Rh6AG278600 Rh6AG278700 Rh6BG205000 Rh6BG278400 Rh6BG278500 Rh6BG278800 Rh6CG206400 Rh6CG280800 Rh6CG281000 Rh6CG281100 Rh6DG196500 Rh6DG273500 Rh6DG273600 Rh6DG273700 Rh7AG166200 Rh7BG168300 Rh7CG174600 Rh7DG167900
rosa_wichuraiana	Rw6G017520 Rw6G023930 Rw6G023950 Rw6G023960 Rw7G014470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	165
AciI	CCGC	1 cut(s)	198
AclWI	GGATC	1 cut(s)	118
AcoI	YGGCCR	1 cut(s)	226
AcsI	RAATTY	1 cut(s)	139
AcuI	CTGAAG	1 cut(s)	164
AfiI	CCNNNNNNNGG	2 cut(s)	124, 165
AgsI	TTSAA	2 cut(s)	139, 223
AjnI	CCWGG	1 cut(s)	123
AluBI	AGCT	2 cut(s)	184, 260
AluI	AGCT	2 cut(s)	184, 260
Alw21I	GWGCWC	1 cut(s)	279
Alw26I	GTCTC	1 cut(s)	320
AlwI	GGATC	1 cut(s)	118
AoxI	GGCC	3 cut(s)	3, 226, 287
ApoI	RAATTY	1 cut(s)	139
Asp700I	GAANNNNTTC	1 cut(s)	261
AsuHPI	GGTGA	3 cut(s)	103, 212, 387
BalI	TGGCCA	1 cut(s)	228
Bbv12I	GWGCWC	1 cut(s)	279
BccI	CCATC	3 cut(s)	140, 239, 400
BceAI	ACGGC	1 cut(s)	46
BciT130I	CCWGG	1 cut(s)	125
BcoDI	GTCTC	1 cut(s)	320
BfaI	CTAG	2 cut(s)	132, 308
Bme1390I	CCNGG	1 cut(s)	125
BmiI	GGNNCC	1 cut(s)	456
BmrFI	CCNGG	1 cut(s)	125
BpmI	CTGGAG	1 cut(s)	170
BsaJI	CCNNGG	2 cut(s)	87, 318
BsaWI	WCCGGW	1 cut(s)	107
Bsc4I	CCNNNNNNNGG	2 cut(s)	124, 165
Bse1I	ACTGG	2 cut(s)	187, 280
Bse3DI	GCAATG	1 cut(s)	45
BseBI	CCWGG	1 cut(s)	125
BseDI	CCNNGG	2 cut(s)	87, 318
BseGI	GGATG	3 cut(s)	151, 254, 412
BseLI	CCNNNNNNNGG	2 cut(s)	124, 165
BseMI	GCAATG	1 cut(s)	45
BseNI	ACTGG	2 cut(s)	187, 280
BseRI	GAGGAG	1 cut(s)	369
BseYI	CCCAGC	1 cut(s)	165
BshFI	GGCC	3 cut(s)	5, 228, 289
BsiHKAI	GWGCWC	1 cut(s)	279
BsiSI	CCGG	1 cut(s)	108
BslI	CCNNNNNNNGG	2 cut(s)	124, 165
BsmAI	GTCTC	1 cut(s)	320
BsnI	GGCC	3 cut(s)	5, 228, 289
Bsp1286I	GDGCHC	1 cut(s)	279
Bsp143I	GATC	1 cut(s)	110
BspACI	CCGC	1 cut(s)	198
BspANI	GGCC	3 cut(s)	5, 228, 289
BspLI	GGNNCC	1 cut(s)	456
BspPI	GGATC	1 cut(s)	118
BsrDI	GCAATG	1 cut(s)	45
BsrI	ACTGG	2 cut(s)	187, 280
BssECI	CCNNGG	2 cut(s)	87, 318
BssMI	GATC	1 cut(s)	110
BssT1I	CCWWGG	1 cut(s)	87
Bst2UI	CCWGG	1 cut(s)	125
Bst4CI	ACNGT	1 cut(s)	402
Bst6I	CTCTTC	2 cut(s)	29, 318
BstC8I	GCNNGC	3 cut(s)	287, 291, 305
BstDSI	CCRYGG	1 cut(s)	318
BstF5I	GGATG	3 cut(s)	151, 254, 412
BstKTI	GATC	1 cut(s)	113
BstMAI	GTCTC	1 cut(s)	320
BstMBI	GATC	1 cut(s)	110
BstMWI	GCNNNNNNNGC	4 cut(s)	47, 295, 304, 452
BstNI	CCWGG	1 cut(s)	125
BstSCI	CCNGG	1 cut(s)	123
BsuRI	GGCC	3 cut(s)	5, 228, 289
BtgI	CCRYGG	1 cut(s)	318
BtgZI	GCGATG	1 cut(s)	258
BtsCI	GGATG	3 cut(s)	151, 254, 412
BtsI	GCAGTG	1 cut(s)	36
BtsIMutI	CAGTG	2 cut(s)	36, 287
Cac8I	GCNNGC	3 cut(s)	287, 291, 305
CviAII	CATG	4 cut(s)	58, 67, 192, 431
DpnI	GATC	1 cut(s)	112
DpnII	GATC	1 cut(s)	110
EaeI	YGGCCR	1 cut(s)	226
Eam1104I	CTCTTC	2 cut(s)	29, 318
EarI	CTCTTC	2 cut(s)	29, 318
Eco130I	CCWWGG	1 cut(s)	87
Eco57I	CTGAAG	1 cut(s)	164
EcoRII	CCWGG	1 cut(s)	123
EcoT14I	CCWWGG	1 cut(s)	87
ErhI	CCWWGG	1 cut(s)	87
FaeI	CATG	4 cut(s)	61, 70, 195, 434
FaiI	YATR	6 cut(s)	59, 68, 193, 209, 432, 452
FatI	CATG	4 cut(s)	57, 66, 191, 430
FokI	GGATG	3 cut(s)	158, 261, 399
FspBI	CTAG	2 cut(s)	132, 308
GsaI	CCCAGC	1 cut(s)	169
GsuI	CTGGAG	1 cut(s)	170
HaeIII	GGCC	3 cut(s)	5, 228, 289
HapII	CCGG	1 cut(s)	108
Hin1II	CATG	4 cut(s)	61, 70, 195, 434
HinfI	GANTC	2 cut(s)	152, 170
HpaII	CCGG	1 cut(s)	108
HphI	GGTGA	3 cut(s)	103, 212, 387
Hpy166II	GTNNAC	1 cut(s)	315
Hpy188I	TCNGA	2 cut(s)	54, 115
Hpy188III	TCNNGA	2 cut(s)	220, 338
Hpy8I	GTNNAC	1 cut(s)	315
Hpy99I	CGWCG	2 cut(s)	356, 388
HpyAV	CCTTC	1 cut(s)	335
HpyCH4III	ACNGT	1 cut(s)	402
HpyF10VI	GCNNNNNNNGC	4 cut(s)	47, 295, 304, 452
Hsp92II	CATG	4 cut(s)	61, 70, 195, 434
Kzo9I	GATC	1 cut(s)	110
LmnI	GCTCC	2 cut(s)	189, 460
MaeI	CTAG	2 cut(s)	132, 308
MaeIII	GTNAC	1 cut(s)	91
MalI	GATC	1 cut(s)	112
MboI	GATC	1 cut(s)	110
MboII	GAAGA	2 cut(s)	16, 335
MhlI	GDGCHC	1 cut(s)	279
MlsI	TGGCCA	1 cut(s)	228
MluCI	AATT	1 cut(s)	139
MluNI	TGGCCA	1 cut(s)	228
MmeI	TCCRAC	2 cut(s)	42, 183
MnlI	CCTC	5 cut(s)	32, 166, 196, 349, 390
Mox20I	TGGCCA	1 cut(s)	228
MroXI	GAANNNNTTC	1 cut(s)	261
MscI	TGGCCA	1 cut(s)	228
MseI	TTAA	1 cut(s)	9
Msp20I	TGGCCA	1 cut(s)	228
MspI	CCGG	1 cut(s)	108
MspR9I	CCNGG	1 cut(s)	125
MvaI	CCWGG	1 cut(s)	125
MwoI	GCNNNNNNNGC	4 cut(s)	47, 295, 304, 452
NdeII	GATC	1 cut(s)	110
NlaIII	CATG	4 cut(s)	61, 70, 195, 434
NlaIV	GGNNCC	1 cut(s)	456
NmeAIII	GCCGAG	1 cut(s)	279
NmuCI	GTSAC	1 cut(s)	91
PdmI	GAANNNNTTC	1 cut(s)	261
PfeI	GAWTC	2 cut(s)	152, 170
PflMI	CCANNNNNTGG	1 cut(s)	165
Psp6I	CCWGG	1 cut(s)	123
PspFI	CCCAGC	1 cut(s)	165
PspGI	CCWGG	1 cut(s)	123
PspN4I	GGNNCC	1 cut(s)	456
SaqAI	TTAA	1 cut(s)	9
Sau3AI	GATC	1 cut(s)	110
ScrFI	CCNGG	1 cut(s)	125
SduI	GDGCHC	1 cut(s)	279
SetI	ASST	6 cut(s)	24, 89, 137, 186, 262, 346
Sse9I	AATT	1 cut(s)	139
SsiI	CCGC	1 cut(s)	198
SspMI	CTAG	2 cut(s)	132, 308
StyD4I	CCNGG	1 cut(s)	123
StyI	CCWWGG	1 cut(s)	87
TaaI	ACNGT	1 cut(s)	402
TaqI	TCGA	4 cut(s)	82, 273, 339, 386
TasI	AATT	1 cut(s)	139
TfiI	GAWTC	2 cut(s)	152, 170
Tru1I	TTAA	1 cut(s)	9
Tru9I	TTAA	1 cut(s)	9
TscAI	CASTG	2 cut(s)	43, 287
TseFI	GTSAC	1 cut(s)	91
Tsp45I	GTSAC	1 cut(s)	91
TspDTI	ATGAA	2 cut(s)	55, 401
TspGWI	ACGGA	3 cut(s)	335, 372, 394
TspRI	CASTG	2 cut(s)	43, 287
Van91I	CCANNNNNTGG	1 cut(s)	165
XapI	RAATTY	1 cut(s)	139
XcmI	CCANNNNNNNNNTGG	1 cut(s)	64
XmnI	GAANNNNTTC	1 cut(s)	261
XspI	CTAG	2 cut(s)	132, 308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.