Rh6BG278500
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0001106
Physical Location & Seq
Forward (+)
50065445 .. 50067443
1999 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG278500.1

Sequence Viewer

Length: 1725 bp
ATGGCGTCTTCATGTGTTCCTGGTCTTAATCTTCCATCGGGTTTTAAGTTTCTTCCAACCAACGAAGAACTATTGGGATATTATCTTCTGAACAAGGTCCGCGGCAAACCATTCAAGTATGACTCTAGGGTTATGAATGAGTTCAATCTTTACAAGACGGAACCCTGGGATCTTTGGACTAGGTTTGGCGGCCCAAGACTGAACCAGGGTGAAGACCTCTTTATCTTTACCGAATTGAAGAAGGTGAATGATAATGGATCAAACGTGTCTCGCACGGCAGGTTCTGGCACCTGGAAAGGTGACACTGCAGGGGCCAAAGTATATGATTCAGAGGATAAGAAGAAGATCTTAGGATCGTGGAAAAGGTTTCATTACGTGCCGATTGAACCAAATGAGAATGGTTCTTGGATTATGTTCGAGTACAAGCTTGATGATTCACTTATCCCCAAATCTTGTATTGGTCGTGATCTTGTGCTGTGCCGGATTCGGAAAGACCGAAAGAGAAAGTTGATTGAAGATCAGATGAATGACACTCCTCAGTCCTCCCGTAGAAAGGTTCCAAGGGTAGACAAACATGATGTCATGTTTACTCATGGGAAACATATTATGAATGATGATACTAATCTGCTGGCTTCTTTTACTCAAGGCTTAGGTAGTGAGGATGAGGAGCAACAATCACAACAACGACAACAACTTGATTCTAACAAGAGCTCTGAGGAACAAGAAATACAACAAGAAGATCCGCAACCGAGAAGGCAACATTCTCATTTTAATGAGCGGCAGCAGCAGCTCCTCGTCAATGATCTGATGATCTCAAGTGATCATTACATATTTCAAAGGGGAGAAACTTATGATCCTATGAATATTGTTCGACCTAACCCTAATGCTGTCATCAGTCATCAGCCGAACAATCTTGGCATTCCTTCTTATTTTCATGAGCAGCAGCAGCAGCTCCTTAGTGATGATCTGATGGTTTCTTGTCATCTTGACAAATTTCAGAGGGTAGACAAACATGAATCTTATGTCATGTACACTTGCGAGAATCAGATTTTGAATGATGAAGATTATAACCTCATGGCTTCATCTGTTACTCGATGGTTATCCAGTGATGAGGAAAAGCAACATCCACAACAACAACAAGAAGTCGAACCTAACAATATGTGTGCCGGACAGCACTCCTCGGTGAGCTTTGAGCGTGAGGAACAACAACTACAACAACAAGATCAGCAACTGCTGCCCTCTACCTCTGATTGTCATGAGAAACAGCAACAGCTCCTCGGCAATGATCTGATGGTTTGTAGTGATCATGACATATTTCGAAGGGCAGAAACATATGAACCTATGAATGTTCAACCTAACCCAGATACCCTCATCAGTCATCAGCCGAACCATCTTAGCATTCCCATTGACATAGATGCAATCCAATTTGATGATTATTGGACGCCGAATGAATTACTTTTGGTTGACACCAATAATGATCCTTATACCGCGGCACCTGATTCAGTACTAGACACATCAAAGCCGTTGCAGATGCAAGATTCTGCAGCTAACGATAACAACGAGATGATGAGGATTGATGAGAGTCATGATCAGACTCAACTGAGTTTCCCTCATGACTCAAACACGACCGAACTTTCTGACAGTGCTGCCCATAATGAAGCGCTCAACTTTAGTACCCTTGATGACAATGTGTTCAATTTAATTGATCTTGACAACCTTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

574

Amino Acids

66.42

Weight (kDa)

4.77

Isoelectric Point (pI)

50.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 12 - 143 5.3e-23 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1068
Acc36I ACCTGC 1 cut(s) 269
AccB1I GGYRCC 2 cut(s) 287, 1492
AccBSI CCGCTC 1 cut(s) 778
AccI GTMKAC 2 cut(s) 567, 1005
AccII CGCG 2 cut(s) 102, 1490
AciI CCGC 7 cut(s) 100, 102, 189, 743, 778, 1488, 1490
AclWI GGATC 6 cut(s) 177, 265, 361, 734, 848, 1472
AcsI RAATTY 1 cut(s) 992
AcyI GRCGYC 2 cut(s) 5, 1442
AfaI GTAC 4 cut(s) 422, 1031, 1506, 1675
AfeI AGCGCT 1 cut(s) 1662
AfiI CCNNNNNNNGG 1 cut(s) 553
AflIII ACRYGT 1 cut(s) 264
AgsI TTSAA 9 cut(s) 115, 145, 238, 386, 515, 836, 1054, 1352, 1696
AjnI CCWGG 4 cut(s) 19, 164, 204, 290
AluBI AGCT 7 cut(s) 427, 711, 790, 952, 1188, 1273, 1547
AluI AGCT 7 cut(s) 427, 711, 790, 952, 1188, 1273, 1547
Alw21I GWGCWC 1 cut(s) 713
Alw26I GTCTC 1 cut(s) 273
AlwI GGATC 6 cut(s) 177, 265, 361, 734, 848, 1472
AlwNI CAGNNNCTG 2 cut(s) 284, 1231
Aor51HI AGCGCT 1 cut(s) 1662
AoxI GGCC 2 cut(s) 190, 312
ApoI RAATTY 1 cut(s) 992
ArsI GACNNNNNNTTYG 2 cut(s) 564, 596
Asp700I GAANNNNTTC 1 cut(s) 140
AspLEI GCGC 1 cut(s) 1663
AspS9I GGNCC 3 cut(s) 97, 191, 312
AsuHPI GGTGA 4 cut(s) 221, 256, 311, 1195
AsuII TTCGAA 1 cut(s) 1318
AvaII GGWCC 1 cut(s) 97
BaeI ACNNNNGTAYC 2 cut(s) 1657, 1690
BanI GGYRCC 2 cut(s) 287, 1492
BanII GRGCYC 1 cut(s) 713
BbsI GAAGAC 1 cut(s) 219
Bbv12I GWGCWC 1 cut(s) 713
BccI CCATC 5 cut(s) 43, 964, 1089, 1285, 1398
BceAI ACGGC 2 cut(s) 291, 1507
BciT130I CCWGG 4 cut(s) 21, 166, 206, 292
BclI TGATCA 3 cut(s) 820, 1303, 1588
BcoDI GTCTC 1 cut(s) 273
BfaI CTAG 3 cut(s) 126, 180, 1508
BfmI CTRYAG 2 cut(s) 306, 1542
BfoI RGCGCY 1 cut(s) 1664
BfuAI ACCTGC 1 cut(s) 269
BglII AGATCT 1 cut(s) 345
BmcAI AGTACT 1 cut(s) 1506
Bme1390I CCNGG 4 cut(s) 21, 166, 206, 292
Bme18I GGWCC 1 cut(s) 97
BmgT120I GGNCC 3 cut(s) 97, 191, 312
BmiI GGNNCC 5 cut(s) 162, 289, 313, 558, 1494
BmrFI CCNGG 4 cut(s) 21, 166, 206, 292
BmsI GCATC 2 cut(s) 1405, 1521
BpiI GAAGAC 1 cut(s) 219
BplI GAGNNNNNCTC 2 cut(s) 1594, 1626
Bpu10I CCTNAGC 1 cut(s) 649
Bpu14I TTCGAA 1 cut(s) 1318
BpuEI CTTGAG 2 cut(s) 627, 799
BsaAI YACGTR 1 cut(s) 376
BsaBI GATNNNNATC 2 cut(s) 621, 1099
BsaHI GRCGYC 2 cut(s) 5, 1442
BsaJI CCNNGG 8 cut(s) 100, 164, 165, 205, 560, 1179, 1276, 1488
Bsc4I CCNNNNNNNGG 1 cut(s) 553
Bse1I ACTGG 1 cut(s) 1104
Bse3DI GCAATG 1 cut(s) 1288
Bse8I GATNNNNATC 2 cut(s) 621, 1099
BseBI CCWGG 4 cut(s) 21, 166, 206, 292
BseDI CCNNGG 8 cut(s) 100, 164, 165, 205, 560, 1179, 1276, 1488
BseGI GGATG 2 cut(s) 667, 1123
BseJI GATNNNNATC 2 cut(s) 621, 1099
BseLI CCNNNNNNNGG 1 cut(s) 553
BseMI GCAATG 1 cut(s) 1288
BseMII CTCAG 3 cut(s) 551, 705, 1592
BseNI ACTGG 1 cut(s) 1104
BseRI GAGGAG 5 cut(s) 525, 680, 782, 1168, 1265
Bsh1236I CGCG 2 cut(s) 102, 1490
Bsh1285I CGRYCG 1 cut(s) 1629
BshFI GGCC 2 cut(s) 192, 314
BshNI GGYRCC 2 cut(s) 287, 1492
BsiEI CGRYCG 1 cut(s) 1629
BsiHKAI GWGCWC 1 cut(s) 713
BsiSI CCGG 2 cut(s) 481, 1167
BslI CCNNNNNNNGG 1 cut(s) 553
BsmAI GTCTC 1 cut(s) 273
BsmI GAATGC 2 cut(s) 918, 1398
BsnI GGCC 2 cut(s) 192, 314
Bsp119I TTCGAA 1 cut(s) 1318
Bsp1286I GDGCHC 1 cut(s) 713
Bsp1407I TGTACA 1 cut(s) 1029
BspACI CCGC 7 cut(s) 100, 102, 189, 743, 778, 1488, 1490
BspANI GGCC 2 cut(s) 192, 314
BspCNI CTCAG 3 cut(s) 550, 706, 1593
BspFNI CGCG 2 cut(s) 102, 1490
BspHI TCATGA 5 cut(s) 934, 1255, 1306, 1585, 1612
BspLI GGNNCC 5 cut(s) 162, 289, 313, 558, 1494
BspMAI CTGCAG 2 cut(s) 310, 1546
BspMI ACCTGC 1 cut(s) 269
BspPI GGATC 6 cut(s) 177, 265, 361, 734, 848, 1472
BspT104I TTCGAA 1 cut(s) 1318
BspT107I GGYRCC 2 cut(s) 287, 1492
BsrBI CCGCTC 1 cut(s) 778
BsrDI GCAATG 1 cut(s) 1288
BsrGI TGTACA 1 cut(s) 1029
BsrI ACTGG 1 cut(s) 1104
BssECI CCNNGG 8 cut(s) 100, 164, 165, 205, 560, 1179, 1276, 1488
BssNI GRCGYC 2 cut(s) 5, 1442
BssT1I CCWWGG 1 cut(s) 560
Bst2UI CCWGG 4 cut(s) 21, 166, 206, 292
Bst4CI ACNGT 1 cut(s) 1643
BstACI GRCGYC 2 cut(s) 5, 1442
BstAPI GCANNNNNTGC 1 cut(s) 1234
BstAUI TGTACA 1 cut(s) 1029
BstBAI YACGTR 1 cut(s) 376
BstBI TTCGAA 1 cut(s) 1318
BstC8I GCNNGC 1 cut(s) 630
BstDEI CTNAG 7 cut(s) 349, 537, 649, 714, 956, 1394, 1601
BstDSI CCRYGG 2 cut(s) 100, 1488
BstF5I GGATG 2 cut(s) 667, 1123
BstFNI CGCG 2 cut(s) 102, 1490
BstH2I RGCGCY 1 cut(s) 1664
BstHHI GCGC 1 cut(s) 1663
BstMAI GTCTC 1 cut(s) 273
BstMCI CGRYCG 1 cut(s) 1629
BstMWI GCNNNNNNNGC 5 cut(s) 784, 787, 946, 949, 1234
BstNI CCWGG 4 cut(s) 21, 166, 206, 292
BstSCI CCNGG 4 cut(s) 19, 164, 204, 290
BstSFI CTRYAG 2 cut(s) 306, 1542
BstUI CGCG 2 cut(s) 102, 1490
BstV2I GAAGAC 1 cut(s) 219
BstX2I RGATCY 3 cut(s) 169, 345, 739
BstYI RGATCY 3 cut(s) 169, 345, 739
BsuRI GGCC 2 cut(s) 192, 314
BtgI CCRYGG 2 cut(s) 100, 1488
BtsCI GGATG 2 cut(s) 667, 1123
BtsI GCAGTG 1 cut(s) 303
BtsIMutI CAGTG 3 cut(s) 303, 1111, 1648
BveI ACCTGC 1 cut(s) 269
Cac8I GCNNGC 1 cut(s) 630
CaiI CAGNNNCTG 2 cut(s) 284, 1231
CciI TCATGA 5 cut(s) 934, 1255, 1306, 1585, 1612
CfoI GCGC 1 cut(s) 1663
Cfr13I GGNCC 3 cut(s) 97, 191, 312
Cfr42I CCGCGG 2 cut(s) 103, 1491
CseI GACGC 1 cut(s) 1450
Csp6I GTAC 4 cut(s) 421, 1030, 1505, 1674
CviQI GTAC 4 cut(s) 421, 1030, 1505, 1674
DdeI CTNAG 7 cut(s) 349, 537, 649, 714, 956, 1394, 1601
Ecl136II GAGCTC 1 cut(s) 711
Eco130I CCWWGG 1 cut(s) 560
Eco24I GRGCYC 1 cut(s) 713
Eco47I GGWCC 1 cut(s) 97
Eco47III AGCGCT 1 cut(s) 1662
Eco53kI GAGCTC 1 cut(s) 711
EcoICRI GAGCTC 1 cut(s) 711
EcoRII CCWGG 4 cut(s) 19, 164, 204, 290
EcoT14I CCWWGG 1 cut(s) 560
EcoT38I GRGCYC 1 cut(s) 713
ErhI CCWWGG 1 cut(s) 560
FalI AAGNNNNNCTT 2 cut(s) 332, 364
FauNDI CATATG 1 cut(s) 1333
FbaI TGATCA 3 cut(s) 820, 1303, 1588
FblI GTMKAC 2 cut(s) 567, 1005
FokI GGATG 2 cut(s) 674, 1110
FriOI GRGCYC 1 cut(s) 713
FspBI CTAG 3 cut(s) 126, 180, 1508
GlaI GCGC 1 cut(s) 1662
HaeII RGCGCY 1 cut(s) 1664
HaeIII GGCC 2 cut(s) 192, 314
HapII CCGG 2 cut(s) 481, 1167
HgaI GACGC 1 cut(s) 1450
HhaI GCGC 1 cut(s) 1663
Hin1I GRCGYC 2 cut(s) 5, 1442
Hin6I GCGC 1 cut(s) 1661
HinP1I GCGC 1 cut(s) 1661
HincII GTYRAC 1 cut(s) 1465
HindII GTYRAC 1 cut(s) 1465
HindIII AAGCTT 1 cut(s) 425
HpaII CCGG 2 cut(s) 481, 1167
HphI GGTGA 4 cut(s) 221, 256, 311, 1195
Hpy166II GTNNAC 5 cut(s) 568, 588, 1006, 1032, 1465
Hpy188III TCNNGA 8 cut(s) 464, 935, 986, 1256, 1307, 1586, 1613, 1709
Hpy8I GTNNAC 5 cut(s) 568, 588, 1006, 1032, 1465
HpyAV CCTTC 4 cut(s) 235, 747, 933, 1314
HpyCH4III ACNGT 1 cut(s) 1643
HpyCH4IV ACGT 2 cut(s) 264, 375
HpyCH4V TGCA 5 cut(s) 308, 1418, 1528, 1534, 1544
HpyF10VI GCNNNNNNNGC 5 cut(s) 784, 787, 946, 949, 1234
HpyF3I CTNAG 7 cut(s) 349, 537, 649, 714, 956, 1394, 1601
HpySE526I ACGT 2 cut(s) 264, 375
Hsp92I GRCGYC 2 cut(s) 5, 1442
HspAI GCGC 1 cut(s) 1661
Ksp22I TGATCA 3 cut(s) 820, 1303, 1588
KspI CCGCGG 2 cut(s) 103, 1491
LmnI GCTCC 4 cut(s) 667, 795, 957, 1278
LweI GCATC 2 cut(s) 1405, 1521
MaeI CTAG 3 cut(s) 126, 180, 1508
MaeII ACGT 2 cut(s) 264, 375
MaeIII GTNAC 2 cut(s) 299, 1087
MbiI CCGCTC 1 cut(s) 778
MflI RGATCY 3 cut(s) 169, 345, 739
MhlI GDGCHC 1 cut(s) 713
MluCI AATT 6 cut(s) 233, 992, 1424, 1451, 1696, 1701
MlyI GAGTC 4 cut(s) 116, 1588, 1591, 1610
MmeI TCCRAC 1 cut(s) 80
MroXI GAANNNNTTC 1 cut(s) 140
MseI TTAA 4 cut(s) 27, 45, 771, 1700
MslI CAYNNNNRTG 1 cut(s) 771
MspA1I CMGCKG 2 cut(s) 102, 1490
MspI CCGG 2 cut(s) 481, 1167
MspR9I CCNGG 4 cut(s) 21, 166, 206, 292
Mva1269I GAATGC 2 cut(s) 918, 1398
MvaI CCWGG 4 cut(s) 21, 166, 206, 292
MvnI CGCG 2 cut(s) 102, 1490
MwoI GCNNNNNNNGC 5 cut(s) 784, 787, 946, 949, 1234
NdeI CATATG 1 cut(s) 1333
NlaIV GGNNCC 5 cut(s) 162, 289, 313, 558, 1494
NmeAIII GCCGAG 1 cut(s) 1257
NmuCI GTSAC 1 cut(s) 299
NspV TTCGAA 1 cut(s) 1318
PagI TCATGA 5 cut(s) 934, 1255, 1306, 1585, 1612
PasI CCCWGGG 1 cut(s) 165
PcsI WCGNNNNNNNCGW 2 cut(s) 493, 1557
PctI GAATGC 2 cut(s) 918, 1398
PdmI GAANNNNTTC 1 cut(s) 140
PfeI GAWTC 8 cut(s) 326, 434, 484, 698, 1016, 1042, 1499, 1538
PleI GAGTC 4 cut(s) 116, 1588, 1590, 1610
PpsI GAGTC 4 cut(s) 116, 1588, 1590, 1610
Ppu21I YACGTR 1 cut(s) 376
PsiI TTATAA 1 cut(s) 1068
Psp124BI GAGCTC 1 cut(s) 713
Psp6I CCWGG 4 cut(s) 19, 164, 204, 290
PspGI CCWGG 4 cut(s) 19, 164, 204, 290
PspN4I GGNNCC 5 cut(s) 162, 289, 313, 558, 1494
PspPI GGNCC 3 cut(s) 97, 191, 312
PsrI GAACNNNNNNTAC 4 cut(s) 711, 743, 1194, 1226
PstI CTGCAG 2 cut(s) 310, 1546
PstNI CAGNNNCTG 2 cut(s) 284, 1231
PsuI RGATCY 3 cut(s) 169, 345, 739
RsaI GTAC 4 cut(s) 422, 1031, 1506, 1675
RsaNI GTAC 4 cut(s) 421, 1030, 1505, 1674
RseI CAYNNNNRTG 1 cut(s) 771
SacI GAGCTC 1 cut(s) 713
SacII CCGCGG 2 cut(s) 103, 1491
SaqAI TTAA 4 cut(s) 27, 45, 771, 1700
Sau96I GGNCC 3 cut(s) 97, 191, 312
ScaI AGTACT 1 cut(s) 1506
SchI GAGTC 4 cut(s) 116, 1588, 1591, 1610
ScrFI CCNGG 4 cut(s) 21, 166, 206, 292
SduI GDGCHC 1 cut(s) 713
SfaNI GCATC 2 cut(s) 1405, 1521
SfcI CTRYAG 2 cut(s) 306, 1542
Sfr303I CCGCGG 2 cut(s) 103, 1491
SfuI TTCGAA 1 cut(s) 1318
SgrBI CCGCGG 2 cut(s) 103, 1491
SinI GGWCC 1 cut(s) 97
SmiMI CAYNNNNRTG 1 cut(s) 771
SmlI CTYRAG 2 cut(s) 642, 814
SmoI CTYRAG 2 cut(s) 642, 814
Sse9I AATT 6 cut(s) 233, 992, 1424, 1451, 1696, 1701
SsiI CCGC 7 cut(s) 100, 102, 189, 743, 778, 1488, 1490
SspI AATATT 1 cut(s) 865
SspMI CTAG 3 cut(s) 126, 180, 1508
SstI GAGCTC 1 cut(s) 713
StyD4I CCNGG 4 cut(s) 19, 164, 204, 290
StyI CCWWGG 1 cut(s) 560
TaaI ACNGT 1 cut(s) 1643
TaiI ACGT 2 cut(s) 267, 378
TaqI TCGA 5 cut(s) 417, 871, 1093, 1146, 1318
TaqII GACCGA 2 cut(s) 510, 1643
TasI AATT 6 cut(s) 233, 992, 1424, 1451, 1696, 1701
TatI WGTACW 3 cut(s) 420, 1029, 1504
TauI GCSGC 4 cut(s) 105, 192, 781, 1493
TfiI GAWTC 8 cut(s) 326, 434, 484, 698, 1016, 1042, 1499, 1538
Tru1I TTAA 4 cut(s) 27, 45, 771, 1700
Tru9I TTAA 4 cut(s) 27, 45, 771, 1700
TscAI CASTG 3 cut(s) 310, 1111, 1648
TseFI GTSAC 1 cut(s) 299
Tsp45I GTSAC 1 cut(s) 299
TspGWI ACGGA 1 cut(s) 173
TspRI CASTG 3 cut(s) 310, 1111, 1648
VpaK11BI GGWCC 1 cut(s) 97
XapI RAATTY 1 cut(s) 992
XmiI GTMKAC 2 cut(s) 567, 1005
XmnI GAANNNNTTC 1 cut(s) 140
XspI CTAG 3 cut(s) 126, 180, 1508
ZrmI AGTACT 1 cut(s) 1506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.