FvH4_2g18880
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0001106
Physical Location & Seq
Forward (+)
16094041 .. 16094673
633 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g18880.t1

Sequence Viewer

Length: 633 bp
ATGATTGAGCTCAATCTTTACAAGGAAGAACCCTGGGATCTTTGGAATAGGTTTGGCGCTCGACTGAACCACGGTGAAGACCTCTATATCTTTACTGAATTGAAGAAGAAGAGTAACAATGGTTCAAACGTGTCTCGCACGACAGGTTCTGGTACCTGGAAAGGTGACACTGCGGAGGCCAAAGTATCAGAGGATAAGAAGATCTTAGGCTCTTGGAAAAGGTTTCGCTACGTTCCGAATGAACCAAATGAGACTGGTTCTTGGATTATGGTCGAGTACAAGCTTGATGATTCATTGAACCCCAAATCTTGCAGGGGTCGTGATCTAGTGCTGAGCCGGATTCGGAAAGACCGAAAGAGAAAGTTGATTGAAGATCAGATGAACGACACTATACAATGCCCCTGTACAAAGGTTGCAAGGGTAGAAGAAACAAATGATGTTAAATCTACTTATGGGATCAGACCTATTTTGAATGACGATACCAATCTGCCGGCTTCTTTTACTCAATGCTTAGCTTCTGAGGAGGAACAACAACTACAACAACAGGAAGAACTTGATTCTAACAAGATGTTGGAGAAGCAACAAGATCCGCAACTGTTGCCTTCTCCTTCTCATTTCCATAAGCAGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

211

Amino Acids

24.41

Weight (kDa)

6.02

Isoelectric Point (pI)

53.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 3 - 95 6.5e-16 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 152
AccB1I GGYRCC 1 cut(s) 152
AciI CCGC 2 cut(s) 173, 590
AclWI GGATC 3 cut(s) 45, 464, 581
AfaI GTAC 3 cut(s) 154, 278, 406
AflIII ACRYGT 1 cut(s) 129
AgsI TTSAA 5 cut(s) 103, 126, 298, 371, 472
AjnI CCWGG 2 cut(s) 32, 155
AluBI AGCT 3 cut(s) 10, 283, 515
AluI AGCT 3 cut(s) 10, 283, 515
Alw21I GWGCWC 1 cut(s) 12
Alw26I GTCTC 2 cut(s) 138, 245
AlwI GGATC 3 cut(s) 45, 464, 581
AlwNI CAGNNNCTG 1 cut(s) 149
AoxI GGCC 1 cut(s) 177
ApeKI GCWGC 1 cut(s) 625
Asp718I GGTACC 1 cut(s) 152
AspLEI GCGC 1 cut(s) 59
AsuHPI GGTGA 2 cut(s) 86, 176
BanI GGYRCC 1 cut(s) 152
BanII GRGCYC 1 cut(s) 12
BbsI GAAGAC 1 cut(s) 84
Bbv12I GWGCWC 1 cut(s) 12
BciT130I CCWGG 2 cut(s) 34, 157
BcoDI GTCTC 2 cut(s) 138, 245
BfaI CTAG 1 cut(s) 326
BfoI RGCGCY 1 cut(s) 60
BglII AGATCT 1 cut(s) 201
BisI GCNGC 1 cut(s) 626
BlpI GCTNAGC 2 cut(s) 332, 511
BlsI GCNGC 1 cut(s) 627
Bme1390I CCNGG 2 cut(s) 34, 157
BmiI GGNNCC 1 cut(s) 154
BmrFI CCNGG 2 cut(s) 34, 157
BpiI GAAGAC 1 cut(s) 84
Bpu1102I GCTNAGC 2 cut(s) 332, 511
BsaBI GATNNNNATC 1 cut(s) 483
BsaJI CCNNGG 3 cut(s) 32, 33, 70
Bse118I RCCGGY 1 cut(s) 490
Bse1I ACTGG 1 cut(s) 259
Bse8I GATNNNNATC 1 cut(s) 483
BseBI CCWGG 2 cut(s) 34, 157
BseDI CCNNGG 3 cut(s) 32, 33, 70
BseJI GATNNNNATC 1 cut(s) 483
BseMII CTCAG 2 cut(s) 323, 510
BseNI ACTGG 1 cut(s) 259
BseRI GAGGAG 1 cut(s) 536
BshFI GGCC 1 cut(s) 179
BshNI GGYRCC 1 cut(s) 152
BsiHKAI GWGCWC 1 cut(s) 12
BsiSI CCGG 2 cut(s) 337, 491
BsmAI GTCTC 2 cut(s) 138, 245
BsnI GGCC 1 cut(s) 179
Bsp1286I GDGCHC 1 cut(s) 12
Bsp1407I TGTACA 1 cut(s) 404
Bsp143I GATC 6 cut(s) 37, 201, 322, 373, 456, 586
Bsp1720I GCTNAGC 2 cut(s) 332, 511
BspACI CCGC 2 cut(s) 173, 590
BspANI GGCC 1 cut(s) 179
BspCNI CTCAG 2 cut(s) 324, 511
BspLI GGNNCC 1 cut(s) 154
BspPI GGATC 3 cut(s) 45, 464, 581
BspT107I GGYRCC 1 cut(s) 152
BsrFI RCCGGY 1 cut(s) 490
BsrGI TGTACA 1 cut(s) 404
BsrI ACTGG 1 cut(s) 259
BssAI RCCGGY 1 cut(s) 490
BssECI CCNNGG 3 cut(s) 32, 33, 70
BssMI GATC 6 cut(s) 37, 201, 322, 373, 456, 586
Bst2UI CCWGG 2 cut(s) 34, 157
Bst4CI ACNGT 2 cut(s) 74, 597
Bst6I CTCTTC 1 cut(s) 104
BstAPI GCANNNNNTGC 1 cut(s) 598
BstAUI TGTACA 1 cut(s) 404
BstC8I GCNNGC 1 cut(s) 492
BstDEI CTNAG 4 cut(s) 205, 332, 511, 519
BstDSI CCRYGG 1 cut(s) 70
BstH2I RGCGCY 1 cut(s) 60
BstHHI GCGC 1 cut(s) 59
BstKTI GATC 6 cut(s) 40, 204, 325, 376, 459, 589
BstMAI GTCTC 2 cut(s) 138, 245
BstMBI GATC 6 cut(s) 37, 201, 322, 373, 456, 586
BstMWI GCNNNNNNNGC 1 cut(s) 598
BstNI CCWGG 2 cut(s) 34, 157
BstSCI CCNGG 2 cut(s) 32, 155
BstV2I GAAGAC 1 cut(s) 84
BstX2I RGATCY 3 cut(s) 37, 201, 586
BstYI RGATCY 3 cut(s) 37, 201, 586
BsuRI GGCC 1 cut(s) 179
BtgI CCRYGG 1 cut(s) 70
BtsI GCAGTG 1 cut(s) 168
BtsIMutI CAGTG 1 cut(s) 168
Cac8I GCNNGC 1 cut(s) 492
CaiI CAGNNNCTG 1 cut(s) 149
CfoI GCGC 1 cut(s) 59
Cfr10I RCCGGY 1 cut(s) 490
Csp6I GTAC 3 cut(s) 153, 277, 405
CviJI RGCY 7 cut(s) 10, 179, 210, 283, 336, 494, 515
CviKI_1 RGCY 7 cut(s) 10, 179, 210, 283, 336, 494, 515
CviQI GTAC 3 cut(s) 153, 277, 405
DdeI CTNAG 4 cut(s) 205, 332, 511, 519
DpnI GATC 6 cut(s) 39, 203, 324, 375, 458, 588
DpnII GATC 6 cut(s) 37, 201, 322, 373, 456, 586
Eam1104I CTCTTC 1 cut(s) 104
EarI CTCTTC 1 cut(s) 104
Ecl136II GAGCTC 1 cut(s) 10
Eco24I GRGCYC 1 cut(s) 12
Eco53kI GAGCTC 1 cut(s) 10
EcoICRI GAGCTC 1 cut(s) 10
EcoRII CCWGG 2 cut(s) 32, 155
EcoT38I GRGCYC 1 cut(s) 12
FaiI YATR 5 cut(s) 87, 269, 392, 453, 621
FalI AAGNNNNNCTT 2 cut(s) 188, 220
Fnu4HI GCNGC 1 cut(s) 626
FriOI GRGCYC 1 cut(s) 12
Fsp4HI GCNGC 1 cut(s) 626
FspBI CTAG 1 cut(s) 326
GlaI GCGC 1 cut(s) 58
GluI GCNGC 1 cut(s) 626
HaeII RGCGCY 1 cut(s) 60
HaeIII GGCC 1 cut(s) 179
HapII CCGG 2 cut(s) 337, 491
HhaI GCGC 1 cut(s) 59
Hin6I GCGC 1 cut(s) 57
HinP1I GCGC 1 cut(s) 57
HindIII AAGCTT 1 cut(s) 281
HinfI GANTC 3 cut(s) 290, 340, 557
HpaII CCGG 2 cut(s) 337, 491
HphI GGTGA 2 cut(s) 86, 176
Hpy188I TCNGA 6 cut(s) 190, 237, 345, 378, 461, 520
Hpy188III TCNNGA 1 cut(s) 320
HpyAV CCTTC 2 cut(s) 612, 618
HpyCH4III ACNGT 2 cut(s) 74, 597
HpyCH4IV ACGT 2 cut(s) 129, 231
HpyCH4V TGCA 2 cut(s) 312, 416
HpyF10VI GCNNNNNNNGC 1 cut(s) 598
HpyF3I CTNAG 4 cut(s) 205, 332, 511, 519
HpySE526I ACGT 2 cut(s) 129, 231
HspAI GCGC 1 cut(s) 57
KpnI GGTACC 1 cut(s) 156
KroI GCCGGC 1 cut(s) 490
KroNI GCCGGC 1 cut(s) 492
Kzo9I GATC 6 cut(s) 37, 201, 322, 373, 456, 586
MaeI CTAG 1 cut(s) 326
MaeII ACGT 2 cut(s) 129, 231
MaeIII GTNAC 2 cut(s) 113, 164
MalI GATC 6 cut(s) 39, 203, 324, 375, 458, 588
MboI GATC 6 cut(s) 37, 201, 322, 373, 456, 586
MboII GAAGA 9 cut(s) 38, 89, 115, 118, 121, 211, 383, 437, 560
MflI RGATCY 3 cut(s) 37, 201, 586
MhlI GDGCHC 1 cut(s) 12
MluCI AATT 1 cut(s) 98
MmeI TCCRAC 1 cut(s) 552
MnlI CCTC 5 cut(s) 92, 169, 184, 514, 517
MroNI GCCGGC 1 cut(s) 490
MseI TTAA 1 cut(s) 441
MspI CCGG 2 cut(s) 337, 491
MspR9I CCNGG 2 cut(s) 34, 157
MvaI CCWGG 2 cut(s) 34, 157
MwoI GCNNNNNNNGC 1 cut(s) 598
NaeI GCCGGC 1 cut(s) 492
NdeII GATC 6 cut(s) 37, 201, 322, 373, 456, 586
NgoMIV GCCGGC 1 cut(s) 490
NlaIV GGNNCC 1 cut(s) 154
NmuCI GTSAC 1 cut(s) 164
PasI CCCWGGG 1 cut(s) 33
PcsI WCGNNNNNNNCGW 1 cut(s) 349
PdiI GCCGGC 1 cut(s) 492
PfeI GAWTC 3 cut(s) 290, 340, 557
PkrI GCNGC 1 cut(s) 627
Psp124BI GAGCTC 1 cut(s) 12
Psp6I CCWGG 2 cut(s) 32, 155
PspGI CCWGG 2 cut(s) 32, 155
PspN4I GGNNCC 1 cut(s) 154
PsrI GAACNNNNNNTAC 4 cut(s) 106, 138, 519, 551
PstNI CAGNNNCTG 1 cut(s) 149
PsuI RGATCY 3 cut(s) 37, 201, 586
RsaI GTAC 3 cut(s) 154, 278, 406
RsaNI GTAC 3 cut(s) 153, 277, 405
SacI GAGCTC 1 cut(s) 12
SaqAI TTAA 1 cut(s) 441
SatI GCNGC 1 cut(s) 626
Sau3AI GATC 6 cut(s) 37, 201, 322, 373, 456, 586
ScrFI CCNGG 2 cut(s) 34, 157
SduI GDGCHC 1 cut(s) 12
Sse9I AATT 1 cut(s) 98
SsiI CCGC 2 cut(s) 173, 590
SspMI CTAG 1 cut(s) 326
SstI GAGCTC 1 cut(s) 12
StyD4I CCNGG 2 cut(s) 32, 155
TaaI ACNGT 2 cut(s) 74, 597
TaiI ACGT 2 cut(s) 132, 234
TaqI TCGA 2 cut(s) 61, 273
TaqII GACCGA 1 cut(s) 366
TasI AATT 1 cut(s) 98
TatI WGTACW 2 cut(s) 276, 404
TfiI GAWTC 3 cut(s) 290, 340, 557
Tru1I TTAA 1 cut(s) 441
Tru9I TTAA 1 cut(s) 441
TscAI CASTG 1 cut(s) 175
TseFI GTSAC 1 cut(s) 164
TseI GCWGC 1 cut(s) 625
Tsp45I GTSAC 1 cut(s) 164
TspDTI ATGAA 3 cut(s) 255, 282, 395
TspRI CASTG 1 cut(s) 175
XspI CTAG 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.