Rmu_co8247145.1_g000001

Egg cell-secreted protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8247145.1
OG0001106
Physical Location & Seq
Reverse (-)
432 .. 770
339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8247145.1_g000001.1.cds

Sequence Viewer

Length: 339 bp
ctggcagctaggttgaatttggatggagaatcctccaactgctgggattctttgcttcagctccagtcatgtagcggtgaggctataatgtttttcttgaatggccagacttctttgggtgatggatgttgcgaagctattcgggtaatcgagcaccagtgctggcctgccttgctcggcgctctagggtttaccacggaagagactgatattctcaaaggttattgcgacgaggctgaacaaactcatcattctcctccgtcgataccatcaccaccgtccctttttcatcctaatagagcagttcatgttccttatcaggctgatatggctccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

112

Amino Acids

12.17

Weight (kDa)

4.54

Isoelectric Point (pI)

59.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 42
AciI CCGC 1 cut(s) 75
AcoI YGGCCR 1 cut(s) 103
AcsI RAATTY 1 cut(s) 16
AcuI CTGAAG 1 cut(s) 41
AfiI CCNNNNNNNGG 1 cut(s) 42
AgsI TTSAA 2 cut(s) 16, 100
AluBI AGCT 3 cut(s) 8, 61, 137
AluI AGCT 3 cut(s) 8, 61, 137
Alw21I GWGCWC 1 cut(s) 156
Alw26I GTCTC 1 cut(s) 197
AoxI GGCC 2 cut(s) 103, 164
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 1 cut(s) 16
Asp700I GAANNNNTTC 1 cut(s) 138
AspLEI GCGC 1 cut(s) 182
AsuHPI GGTGA 3 cut(s) 89, 131, 264
BalI TGGCCA 1 cut(s) 105
Bbv12I GWGCWC 1 cut(s) 156
BbvI GCAGC 1 cut(s) 17
BccI CCATC 3 cut(s) 17, 116, 277
BcoDI GTCTC 1 cut(s) 197
BfaI CTAG 2 cut(s) 9, 185
BfoI RGCGCY 1 cut(s) 183
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
BmiI GGNNCC 1 cut(s) 333
BpmI CTGGAG 1 cut(s) 47
BsaJI CCNNGG 1 cut(s) 195
Bsc4I CCNNNNNNNGG 1 cut(s) 42
Bse1I ACTGG 2 cut(s) 64, 157
BseDI CCNNGG 1 cut(s) 195
BseGI GGATG 3 cut(s) 28, 131, 289
BseLI CCNNNNNNNGG 1 cut(s) 42
BseNI ACTGG 2 cut(s) 64, 157
BseRI GAGGAG 1 cut(s) 246
BseXI GCAGC 1 cut(s) 17
BseYI CCCAGC 1 cut(s) 42
BshFI GGCC 2 cut(s) 105, 166
BsiHKAI GWGCWC 1 cut(s) 156
BslFI GGGAC 1 cut(s) 265
BslI CCNNNNNNNGG 1 cut(s) 42
BsmAI GTCTC 1 cut(s) 197
BsmFI GGGAC 1 cut(s) 265
BsnI GGCC 2 cut(s) 105, 166
Bsp1286I GDGCHC 1 cut(s) 156
BspACI CCGC 1 cut(s) 75
BspANI GGCC 2 cut(s) 105, 166
BspLI GGNNCC 1 cut(s) 333
BsrI ACTGG 2 cut(s) 64, 157
BssECI CCNNGG 1 cut(s) 195
Bst4CI ACNGT 1 cut(s) 279
Bst6I CTCTTC 1 cut(s) 195
BstC8I GCNNGC 2 cut(s) 164, 168
BstDSI CCRYGG 1 cut(s) 195
BstF5I GGATG 3 cut(s) 28, 131, 289
BstH2I RGCGCY 1 cut(s) 183
BstHHI GCGC 1 cut(s) 182
BstMAI GTCTC 1 cut(s) 197
BstMWI GCNNNNNNNGC 2 cut(s) 172, 329
BstV1I GCAGC 1 cut(s) 17
BsuRI GGCC 2 cut(s) 105, 166
BtgI CCRYGG 1 cut(s) 195
BtsCI GGATG 3 cut(s) 28, 131, 289
BtsIMutI CAGTG 1 cut(s) 164
Cac8I GCNNGC 2 cut(s) 164, 168
CfoI GCGC 1 cut(s) 182
CviAII CATG 2 cut(s) 69, 308
CviJI RGCY 9 cut(s) 8, 61, 83, 105, 137, 166, 236, 323, 332
CviKI_1 RGCY 9 cut(s) 8, 61, 83, 105, 137, 166, 236, 323, 332
EaeI YGGCCR 1 cut(s) 103
Eam1104I CTCTTC 1 cut(s) 195
EarI CTCTTC 1 cut(s) 195
Eco57I CTGAAG 1 cut(s) 41
FaeI CATG 2 cut(s) 72, 311
FaiI YATR 4 cut(s) 70, 86, 309, 329
FaqI GGGAC 1 cut(s) 265
FatI CATG 2 cut(s) 68, 307
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 3 cut(s) 35, 138, 276
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 2 cut(s) 9, 185
GlaI GCGC 1 cut(s) 181
GluI GCNGC 1 cut(s) 6
GsaI CCCAGC 1 cut(s) 46
GsuI CTGGAG 1 cut(s) 47
HaeII RGCGCY 1 cut(s) 183
HaeIII GGCC 2 cut(s) 105, 166
HhaI GCGC 1 cut(s) 182
Hin1II CATG 2 cut(s) 72, 311
Hin6I GCGC 1 cut(s) 180
HinP1I GCGC 1 cut(s) 180
HinfI GANTC 2 cut(s) 29, 47
HphI GGTGA 3 cut(s) 89, 131, 264
Hpy166II GTNNAC 1 cut(s) 192
Hpy188III TCNNGA 1 cut(s) 97
Hpy8I GTNNAC 1 cut(s) 192
Hpy99I CGWCG 2 cut(s) 233, 265
HpyCH4III ACNGT 1 cut(s) 279
HpyF10VI GCNNNNNNNGC 2 cut(s) 172, 329
Hsp92II CATG 2 cut(s) 72, 311
HspAI GCGC 1 cut(s) 180
LmnI GCTCC 2 cut(s) 66, 337
LpnPI CCDG 7 cut(s) 28, 77, 119, 148, 170, 180, 305
Lsp1109I GCAGC 1 cut(s) 17
MaeI CTAG 2 cut(s) 9, 185
MboII GAAGA 1 cut(s) 212
MhlI GDGCHC 1 cut(s) 156
MlsI TGGCCA 1 cut(s) 105
MluCI AATT 1 cut(s) 16
MluNI TGGCCA 1 cut(s) 105
MmeI TCCRAC 1 cut(s) 60
MnlI CCTC 4 cut(s) 43, 73, 226, 267
Mox20I TGGCCA 1 cut(s) 105
MroXI GAANNNNTTC 1 cut(s) 138
MscI TGGCCA 1 cut(s) 105
Msp20I TGGCCA 1 cut(s) 105
MwoI GCNNNNNNNGC 2 cut(s) 172, 329
NlaIII CATG 2 cut(s) 72, 311
NlaIV GGNNCC 1 cut(s) 333
NmeAIII GCCGAG 1 cut(s) 156
PdmI GAANNNNTTC 1 cut(s) 138
PfeI GAWTC 2 cut(s) 29, 47
PflMI CCANNNNNTGG 1 cut(s) 42
PkrI GCNGC 1 cut(s) 7
PspFI CCCAGC 1 cut(s) 42
PspN4I GGNNCC 1 cut(s) 333
SatI GCNGC 1 cut(s) 6
SduI GDGCHC 1 cut(s) 156
SetI ASST 5 cut(s) 10, 14, 63, 139, 223
Sse9I AATT 1 cut(s) 16
SsiI CCGC 1 cut(s) 75
SspMI CTAG 2 cut(s) 9, 185
TaaI ACNGT 1 cut(s) 279
TaqI TCGA 2 cut(s) 150, 263
TasI AATT 1 cut(s) 16
TfiI GAWTC 2 cut(s) 29, 47
TscAI CASTG 1 cut(s) 164
TseI GCWGC 1 cut(s) 5
TspDTI ATGAA 2 cut(s) 278, 296
TspGWI ACGGA 2 cut(s) 212, 249
TspRI CASTG 1 cut(s) 164
Van91I CCANNNNNTGG 1 cut(s) 42
XapI RAATTY 1 cut(s) 16
XmnI GAANNNNTTC 1 cut(s) 138
XspI CTAG 2 cut(s) 9, 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.