Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002208

Physical Location & Seq

Genomic Coordinates Forward (+)

6571 .. 6672

Gene Structure 102 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G01021.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 102 bp

ATGCGTCCTGGTCGGATGCGGAACGGAGCAATCCGGTCCGCCGATCGATTCGGGGCGTGGACCGACGCGGATTACGGTGGCGGCCTAAGCCCGGGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006304 GO:0006305 GO:0006306 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009292 GO:0009294 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0019222 GO:0031047 GO:0032259 GO:0033554 GO:0034641 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0044764 GO:0045003 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0080188 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko04918 map04918

Pfam Domains

Protein Families

Helicase_C SNF2_N zf-C3HC4 zf-C3HC4_2 zf-C3HC4_3

Protein Analysis

33

Amino Acids

3.54

Weight (kDa)

10.61

Isoelectric Point (pI)

24.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01021
pyrus_communis	pycom10g22490 pycom12554g00020 pycom12554g00070 pycom12555g00010 pycom12555g00110 pycom12555g00120 pycom12555g00200 pycom12597g00030 pycom12597g00040 pycom12597g00050 pycom2132g00040 pycom2132g00050 pycom2158g00030 pycom2158g00040 pycom2246g00010 pycom2246g00020 pycom2246g00030 pycom2246g00040 pycom2246g00090 pycom2246g00180 pycom2246g00200 pycom2247g00030 pycom2247g00060 pycom2303g00020 pycom2303g00060 pycom2303g00100 pycom2303g00130 pycom2303g00160 pycom2575g00010 pycom2575g00050 pycom280g00090 pycom280g00100 pycom280g00120 pycom420g00340 pycom520g01340 pycom553g00010 pycom553g00020 pycom581g00110 pycom961g00010
rosa_roxburghii	Rroxscaffold_118G00451770 Rroxscaffold_31G00438260 Rroxscaffold_6G00387770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	68
AciI	CCGC	4 cut(s)	19, 39, 68, 81
AfiI	CCNNNNNNNGG	1 cut(s)	91
AjnI	CCWGG	1 cut(s)	7
Ama87I	CYCGRG	1 cut(s)	91
AoxI	GGCC	1 cut(s)	82
AspS9I	GGNCC	2 cut(s)	36, 60
AsuC2I	CCSGG	2 cut(s)	92, 93
AvaI	CYCGRG	1 cut(s)	91
AvaII	GGWCC	2 cut(s)	36, 60
BciT130I	CCWGG	1 cut(s)	9
BcnI	CCSGG	2 cut(s)	92, 93
BisI	GCNGC	1 cut(s)	82
BlsI	GCNGC	1 cut(s)	83
Bme1390I	CCNGG	3 cut(s)	9, 92, 93
Bme18I	GGWCC	2 cut(s)	36, 60
BmeT110I	CYCGRG	1 cut(s)	91
BmgT120I	GGNCC	2 cut(s)	36, 60
BmrFI	CCNGG	3 cut(s)	9, 92, 93
BmsI	GCATC	1 cut(s)	6
Bpu10I	CCTNAGC	1 cut(s)	86
BpuMI	CCSGG	2 cut(s)	92, 93
Bsa29I	ATCGAT	1 cut(s)	46
BsaJI	CCNNGG	1 cut(s)	91
BsaWI	WCCGGW	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	1 cut(s)	91
BseBI	CCWGG	1 cut(s)	9
BseCI	ATCGAT	1 cut(s)	46
BseDI	CCNNGG	1 cut(s)	91
BseGI	GGATG	1 cut(s)	21
BseLI	CCNNNNNNNGG	1 cut(s)	91
Bsh1236I	CGCG	1 cut(s)	68
Bsh1285I	CGRYCG	1 cut(s)	46
BshFI	GGCC	1 cut(s)	84
BshVI	ATCGAT	1 cut(s)	46
BsiEI	CGRYCG	1 cut(s)	46
BsiHKCI	CYCGRG	1 cut(s)	91
BsiSI	CCGG	2 cut(s)	34, 92
BslI	CCNNNNNNNGG	1 cut(s)	91
BsnI	GGCC	1 cut(s)	84
BsoBI	CYCGRG	1 cut(s)	91
Bsp143I	GATC	1 cut(s)	43
BspACI	CCGC	4 cut(s)	19, 39, 68, 81
BspANI	GGCC	1 cut(s)	84
BspDI	ATCGAT	1 cut(s)	46
BspFNI	CGCG	1 cut(s)	68
BssECI	CCNNGG	1 cut(s)	91
BssMI	GATC	1 cut(s)	43
Bst2UI	CCWGG	1 cut(s)	9
Bst4CI	ACNGT	1 cut(s)	77
BstDEI	CTNAG	1 cut(s)	86
BstF5I	GGATG	1 cut(s)	21
BstFNI	CGCG	1 cut(s)	68
BstKTI	GATC	1 cut(s)	46
BstMBI	GATC	1 cut(s)	43
BstMCI	CGRYCG	1 cut(s)	46
BstMWI	GCNNNNNNNGC	1 cut(s)	87
BstNI	CCWGG	1 cut(s)	9
BstSCI	CCNGG	3 cut(s)	7, 90, 91
BstUI	CGCG	1 cut(s)	68
Bsu15I	ATCGAT	1 cut(s)	46
BsuRI	GGCC	1 cut(s)	84
BsuTUI	ATCGAT	1 cut(s)	46
BtsCI	GGATG	1 cut(s)	21
Cfr13I	GGNCC	2 cut(s)	36, 60
Cfr9I	CCCGGG	1 cut(s)	91
ClaI	ATCGAT	1 cut(s)	46
CpoI	CGGWCCG	1 cut(s)	36
CseI	GACGC	1 cut(s)	74
CspI	CGGWCCG	1 cut(s)	36
CviJI	RGCY	3 cut(s)	84, 90, 96
CviKI_1	RGCY	3 cut(s)	84, 90, 96
DdeI	CTNAG	1 cut(s)	86
DpnI	GATC	1 cut(s)	45
DpnII	GATC	1 cut(s)	43
EciI	GGCGGA	1 cut(s)	28
Eco47I	GGWCC	2 cut(s)	36, 60
Eco88I	CYCGRG	1 cut(s)	91
EcoRII	CCWGG	1 cut(s)	7
Fnu4HI	GCNGC	1 cut(s)	82
FokI	GGATG	1 cut(s)	28
Fsp4HI	GCNGC	1 cut(s)	82
GluI	GCNGC	1 cut(s)	82
HaeIII	GGCC	1 cut(s)	84
HapII	CCGG	2 cut(s)	34, 92
HgaI	GACGC	1 cut(s)	74
HinfI	GANTC	1 cut(s)	48
HpaII	CCGG	2 cut(s)	34, 92
Hpy166II	GTNNAC	1 cut(s)	60
Hpy188I	TCNGA	1 cut(s)	15
Hpy8I	GTNNAC	1 cut(s)	60
Hpy99I	CGWCG	1 cut(s)	68
HpyCH4III	ACNGT	1 cut(s)	77
HpyF10VI	GCNNNNNNNGC	1 cut(s)	87
HpyF3I	CTNAG	1 cut(s)	86
Kzo9I	GATC	1 cut(s)	43
LmnI	GCTCC	1 cut(s)	26
LpnPI	CCDG	2 cut(s)	21, 47
LweI	GCATC	1 cut(s)	6
MalI	GATC	1 cut(s)	45
MboI	GATC	1 cut(s)	43
MspI	CCGG	2 cut(s)	34, 92
MspR9I	CCNGG	3 cut(s)	9, 92, 93
MvaI	CCWGG	1 cut(s)	9
MvnI	CGCG	1 cut(s)	68
MwoI	GCNNNNNNNGC	1 cut(s)	87
NciI	CCSGG	2 cut(s)	92, 93
NdeII	GATC	1 cut(s)	43
PfeI	GAWTC	1 cut(s)	48
PkrI	GCNGC	1 cut(s)	83
Ple19I	CGATCG	1 cut(s)	46
Psp6I	CCWGG	1 cut(s)	7
PspGI	CCWGG	1 cut(s)	7
PspPI	GGNCC	2 cut(s)	36, 60
PvuI	CGATCG	1 cut(s)	46
Rsr2I	CGGWCCG	1 cut(s)	36
RsrII	CGGWCCG	1 cut(s)	36
SatI	GCNGC	1 cut(s)	82
Sau3AI	GATC	1 cut(s)	43
Sau96I	GGNCC	2 cut(s)	36, 60
ScrFI	CCNGG	3 cut(s)	9, 92, 93
SfaNI	GCATC	1 cut(s)	6
SgeI	CNNG	6 cut(s)	20, 21, 46, 64, 69, 79
SinI	GGWCC	2 cut(s)	36, 60
SmaI	CCCGGG	1 cut(s)	93
SrfI	GCCCGGGC	1 cut(s)	93
SsiI	CCGC	4 cut(s)	19, 39, 68, 81
StyD4I	CCNGG	3 cut(s)	7, 90, 91
TaaI	ACNGT	1 cut(s)	77
TaqI	TCGA	1 cut(s)	46
TaqII	GACCGA	1 cut(s)	77
TauI	GCSGC	1 cut(s)	84
TfiI	GAWTC	1 cut(s)	48
TspGWI	ACGGA	1 cut(s)	39
TspMI	CCCGGG	1 cut(s)	91
VpaK11BI	GGWCC	2 cut(s)	36, 60
XmaI	CCCGGG	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.