pycom2246g00030

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00002246
OG0002208
Physical Location & Seq
Forward (+)
3146 .. 3474
329 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom2246g00030.2

Sequence Viewer

Length: 288 bp
ATGATTAACAGGGACAGTCGTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTGGGGGCTCGAAGACGATCAGATACCGTCCTAGTCTCAACCATAAACGATGCCGACCAGGGATCGGCGGATGTTACTTTTAGGACTCCGCCGGCACCTTATGAGAAATCAAAGTTTTTGGGTTCCGGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.38

Weight (kDa)

10.26

Isoelectric Point (pI)

41.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 178, 259
AciI CCGC 3 cut(s) 152, 173, 281
AclWI GGATC 1 cut(s) 154
AfiI CCNNNNNNNGG 1 cut(s) 148
AjnI CCWGG 2 cut(s) 141, 265
AjuI GAANNNNNNNTTGG 2 cut(s) 47, 79
Alw26I GTCTC 1 cut(s) 124
AlwI GGATC 1 cut(s) 154
AseI ATTAAT 1 cut(s) 69
AsuC2I CCSGG 1 cut(s) 211
BaeGI GKGCMC 1 cut(s) 262
BanI GGYRCC 2 cut(s) 178, 259
BanII GRGCYC 1 cut(s) 94
BbsI GAAGAC 1 cut(s) 103
BciT130I CCWGG 2 cut(s) 143, 267
BcnI CCSGG 1 cut(s) 211
BcoDI GTCTC 1 cut(s) 124
BfaI CTAG 1 cut(s) 116
BisI GCNGC 1 cut(s) 282
BlsI GCNGC 1 cut(s) 283
Bme1390I CCNGG 3 cut(s) 143, 211, 267
BmiI GGNNCC 4 cut(s) 180, 208, 261, 276
BmrFI CCNGG 3 cut(s) 143, 211, 267
BmsI GCATC 1 cut(s) 124
BpiI GAAGAC 1 cut(s) 103
BpuMI CCSGG 1 cut(s) 211
BsaJI CCNNGG 3 cut(s) 54, 142, 210
Bsc4I CCNNNNNNNGG 1 cut(s) 148
Bse118I RCCGGY 1 cut(s) 175
BseBI CCWGG 2 cut(s) 143, 267
BseDI CCNNGG 3 cut(s) 54, 142, 210
BseGI GGATG 2 cut(s) 64, 160
BseLI CCNNNNNNNGG 1 cut(s) 148
BseSI GKGCMC 1 cut(s) 262
BshNI GGYRCC 2 cut(s) 178, 259
BsiSI CCGG 2 cut(s) 176, 210
BslFI GGGAC 1 cut(s) 26
BslI CCNNNNNNNGG 1 cut(s) 148
BsmAI GTCTC 1 cut(s) 124
BsmFI GGGAC 1 cut(s) 26
Bsp1286I GDGCHC 2 cut(s) 94, 262
Bsp143I GATC 2 cut(s) 101, 146
BspACI CCGC 3 cut(s) 152, 173, 281
BspLI GGNNCC 4 cut(s) 180, 208, 261, 276
BspPI GGATC 1 cut(s) 154
BspT107I GGYRCC 2 cut(s) 178, 259
BsrFI RCCGGY 1 cut(s) 175
BssAI RCCGGY 1 cut(s) 175
BssECI CCNNGG 3 cut(s) 54, 142, 210
BssMI GATC 2 cut(s) 101, 146
BssT1I CCWWGG 1 cut(s) 54
Bst2UI CCWGG 2 cut(s) 143, 267
Bst4CI ACNGT 2 cut(s) 17, 112
BstC8I GCNNGC 2 cut(s) 177, 279
BstF5I GGATG 2 cut(s) 64, 160
BstKTI GATC 2 cut(s) 104, 149
BstMAI GTCTC 1 cut(s) 124
BstMBI GATC 2 cut(s) 101, 146
BstNI CCWGG 2 cut(s) 143, 267
BstSCI CCNGG 3 cut(s) 141, 209, 265
BstSLI GKGCMC 1 cut(s) 262
BstV2I GAAGAC 1 cut(s) 103
BtsCI GGATG 2 cut(s) 64, 160
Cac8I GCNNGC 2 cut(s) 177, 279
Cfr10I RCCGGY 1 cut(s) 175
CviJI RGCY 4 cut(s) 92, 232, 277, 284
CviKI_1 RGCY 4 cut(s) 92, 232, 277, 284
DpnI GATC 2 cut(s) 103, 148
DpnII GATC 2 cut(s) 101, 146
EciI GGCGGA 2 cut(s) 162, 167
Eco130I CCWWGG 1 cut(s) 54
Eco24I GRGCYC 1 cut(s) 94
EcoRII CCWGG 2 cut(s) 141, 265
EcoT14I CCWWGG 1 cut(s) 54
EcoT38I GRGCYC 1 cut(s) 94
ErhI CCWWGG 1 cut(s) 54
FaiI YATR 4 cut(s) 24, 128, 186, 221
FaqI GGGAC 1 cut(s) 26
Fnu4HI GCNGC 1 cut(s) 282
FokI GGATG 2 cut(s) 71, 167
FriOI GRGCYC 1 cut(s) 94
Fsp4HI GCNGC 1 cut(s) 282
FspBI CTAG 1 cut(s) 116
GluI GCNGC 1 cut(s) 282
HapII CCGG 2 cut(s) 176, 210
HinfI GANTC 1 cut(s) 169
HpaII CCGG 2 cut(s) 176, 210
Hpy188I TCNGA 1 cut(s) 106
Hpy188III TCNNGA 1 cut(s) 74
HpyAV CCTTC 1 cut(s) 249
HpyCH4III ACNGT 2 cut(s) 17, 112
KroI GCCGGC 1 cut(s) 175
KroNI GCCGGC 1 cut(s) 177
Kzo9I GATC 2 cut(s) 101, 146
LmnI GCTCC 1 cut(s) 274
LpnPI CCDG 6 cut(s) 128, 155, 189, 223, 252, 279
LweI GCATC 1 cut(s) 124
MaeI CTAG 1 cut(s) 116
MaeIII GTNAC 1 cut(s) 157
MalI GATC 2 cut(s) 103, 148
MboI GATC 2 cut(s) 101, 146
MboII GAAGA 1 cut(s) 108
MhlI GDGCHC 2 cut(s) 94, 262
MluCI AATT 1 cut(s) 246
MlyI GAGTC 1 cut(s) 163
MroNI GCCGGC 1 cut(s) 175
MseI TTAA 4 cut(s) 6, 69, 240, 286
MspI CCGG 2 cut(s) 176, 210
MspR9I CCNGG 3 cut(s) 143, 211, 267
MvaI CCWGG 2 cut(s) 143, 267
NaeI GCCGGC 1 cut(s) 177
NciI CCSGG 1 cut(s) 211
NdeII GATC 2 cut(s) 101, 146
NgoMIV GCCGGC 1 cut(s) 175
NlaIV GGNNCC 4 cut(s) 180, 208, 261, 276
PdiI GCCGGC 1 cut(s) 177
PkrI GCNGC 1 cut(s) 283
PleI GAGTC 1 cut(s) 163
PpsI GAGTC 1 cut(s) 163
PshBI ATTAAT 1 cut(s) 69
Psp6I CCWGG 2 cut(s) 141, 265
PspGI CCWGG 2 cut(s) 141, 265
PspN4I GGNNCC 4 cut(s) 180, 208, 261, 276
SaqAI TTAA 4 cut(s) 6, 69, 240, 286
SatI GCNGC 1 cut(s) 282
Sau3AI GATC 2 cut(s) 101, 146
SchI GAGTC 1 cut(s) 163
ScrFI CCNGG 3 cut(s) 143, 211, 267
SduI GDGCHC 2 cut(s) 94, 262
SetI ASST 1 cut(s) 184
SfaNI GCATC 1 cut(s) 124
Sse9I AATT 1 cut(s) 246
SsiI CCGC 3 cut(s) 152, 173, 281
SspMI CTAG 1 cut(s) 116
StyD4I CCNGG 3 cut(s) 141, 209, 265
StyI CCWWGG 1 cut(s) 54
TaaI ACNGT 2 cut(s) 17, 112
TaqI TCGA 1 cut(s) 94
TasI AATT 1 cut(s) 246
TauI GCSGC 1 cut(s) 284
Tru1I TTAA 4 cut(s) 6, 69, 240, 286
Tru9I TTAA 4 cut(s) 6, 69, 240, 286
TspDTI ATGAA 2 cut(s) 39, 55
TspGWI ACGGA 1 cut(s) 267
VspI ATTAAT 1 cut(s) 69
XspI CTAG 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.