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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 777, 3198 |
| AatII | GACGTC | 2 cut(s) | 781, 2040 |
| Acc16I | TGCGCA | 2 cut(s) | 463, 2083 |
| Acc36I | ACCTGC | 2 cut(s) | 497, 2087 |
| AccB1I | GGYRCC | 4 cut(s) | 1201, 1543, 1624, 2771 |
| AccBSI | CCGCTC | 3 cut(s) | 2165, 2579, 3276 |
| AccI | GTMKAC | 6 cut(s) | 265, 743, 971, 1238, 2512, 3086 |
| AccIII | TCCGGA | 2 cut(s) | 1062, 1324 |
| AclI | AACGTT | 1 cut(s) | 503 |
| AclWI | GGATC | 7 cut(s) | 797, 1026, 1174, 1187, 1364, 1519, 2011 |
| AcoI | YGGCCR | 8 cut(s) | 1309, 1679, 1774, 1797, 1863, 2607, 3045, 3153 |
| AcsI | RAATTY | 3 cut(s) | 864, 1899, 2653 |
| AcuI | CTGAAG | 1 cut(s) | 674 |
| AfaI | GTAC | 8 cut(s) | 319, 426, 716, 1157, 1954, 2176, 2877, 3117 |
| AflIII | ACRYGT | 4 cut(s) | 320, 358, 441, 711 |
| AgeI | ACCGGT | 2 cut(s) | 1241, 1262 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2630 |
| AjiI | CACGTC | 2 cut(s) | 359, 2114 |
| AjnI | CCWGG | 6 cut(s) | 795, 1296, 1506, 1630, 2436, 2628 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1412, 1444 |
| Alw21I | GWGCWC | 3 cut(s) | 574, 1262, 3165 |
| Alw26I | GTCTC | 9 cut(s) | 349, 460, 614, 767, 832, 1489, 1725, 2852, 3071 |
| Alw44I | GTGCAC | 1 cut(s) | 1258 |
| AlwI | GGATC | 7 cut(s) | 797, 1026, 1174, 1187, 1364, 1519, 2011 |
| Ama87I | CYCGRG | 7 cut(s) | 618, 2096, 2154, 2168, 2473, 3013, 3054 |
| Aor13HI | TCCGGA | 2 cut(s) | 1062, 1324 |
| ApaI | GGGCCC | 1 cut(s) | 2753 |
| ApaLI | GTGCAC | 1 cut(s) | 1258 |
| ApeKI | GCWGC | 7 cut(s) | 492, 732, 1105, 1208, 2027, 2084, 3104 |
| ApoI | RAATTY | 3 cut(s) | 864, 1899, 2653 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 348, 380 |
| AseI | ATTAAT | 1 cut(s) | 1434 |
| AsiGI | ACCGGT | 2 cut(s) | 1241, 1262 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 274, 864, 2105 |
| AsuHPI | GGTGA | 4 cut(s) | 182, 2003, 2795, 3272 |
| AsuII | TTCGAA | 1 cut(s) | 210 |
| AvaI | CYCGRG | 7 cut(s) | 618, 2096, 2154, 2168, 2473, 3013, 3054 |
| AxyI | CCTNAGG | 1 cut(s) | 3361 |
| BaeGI | GKGCMC | 5 cut(s) | 1262, 1627, 2430, 2753, 2802 |
| BamHI | GGATCC | 1 cut(s) | 1179 |
| BanI | GGYRCC | 4 cut(s) | 1201, 1543, 1624, 2771 |
| BanII | GRGCYC | 9 cut(s) | 35, 982, 1131, 1459, 2140, 2163, 2753, 2792, 3165 |
| BauI | CACGAG | 3 cut(s) | 457, 573, 2818 |
| BbsI | GAAGAC | 4 cut(s) | 661, 1468, 1880, 2265 |
| Bbv12I | GWGCWC | 3 cut(s) | 574, 1262, 3165 |
| BbvCI | CCTCAGC | 2 cut(s) | 1736, 2735 |
| BbvI | GCAGC | 7 cut(s) | 479, 719, 1117, 1220, 2014, 2096, 3116 |
| BccI | CCATC | 6 cut(s) | 462, 1037, 2388, 2490, 2944, 3251 |
| BcgI | CGANNNNNNTGC | 8 cut(s) | 781, 815, 1012, 1046, 1856, 1890, 3375, 3409 |
| BciT130I | CCWGG | 6 cut(s) | 797, 1298, 1508, 1632, 2438, 2630 |
| BcoDI | GTCTC | 9 cut(s) | 349, 460, 614, 767, 832, 1489, 1725, 2852, 3071 |
| BfaI | CTAG | 8 cut(s) | 47, 234, 909, 1481, 1749, 1905, 2703, 3333 |
| BfmI | CTRYAG | 2 cut(s) | 113, 1854 |
| BfoI | RGCGCY | 2 cut(s) | 2775, 2827 |
| BfuAI | ACCTGC | 2 cut(s) | 497, 2087 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 545, 3119 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2630 |
| BmeT110I | CYCGRG | 7 cut(s) | 618, 2096, 2154, 2168, 2473, 3013, 3054 |
| BmgBI | CACGTC | 2 cut(s) | 359, 2114 |
| BmrI | ACTGGG | 1 cut(s) | 33 |
| BmsI | GCATC | 7 cut(s) | 416, 632, 1054, 1489, 2330, 2953, 3384 |
| BmuI | ACTGGG | 1 cut(s) | 33 |
| BpiI | GAAGAC | 4 cut(s) | 661, 1468, 1880, 2265 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 578, 610 |
| BpmI | CTGGAG | 1 cut(s) | 2743 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1736, 2735, 3272 |
| Bpu14I | TTCGAA | 1 cut(s) | 210 |
| Bsa29I | ATCGAT | 1 cut(s) | 2324 |
| BsaAI | YACGTR | 2 cut(s) | 321, 921 |
| BsaI | GGTCTC | 2 cut(s) | 1725, 2852 |
| BsaWI | WCCGGW | 5 cut(s) | 1062, 1241, 1262, 1324, 1988 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1180, 1210, 3068, 3098 |
| Bse118I | RCCGGY | 9 cut(s) | 544, 1241, 1262, 1283, 1540, 2122, 2186, 2996, 3118 |
| Bse1I | ACTGG | 3 cut(s) | 39, 810, 2766 |
| Bse21I | CCTNAGG | 1 cut(s) | 3361 |
| Bse3DI | GCAATG | 2 cut(s) | 142, 1872 |
| BseAI | TCCGGA | 2 cut(s) | 1062, 1324 |
| BseBI | CCWGG | 6 cut(s) | 797, 1298, 1508, 1632, 2438, 2630 |
| BseCI | ATCGAT | 1 cut(s) | 2324 |
| BseGI | GGATG | 8 cut(s) | 473, 647, 1092, 1429, 1525, 1764, 2955, 2983 |
| BseMI | GCAATG | 2 cut(s) | 142, 1872 |
| BseMII | CTCAG | 5 cut(s) | 1067, 1750, 2749, 3263, 3375 |
| BseNI | ACTGG | 3 cut(s) | 39, 810, 2766 |
| BsePI | GCGCGC | 7 cut(s) | 1826, 2224, 2251, 2253, 3107, 3109, 3138 |
| BseRI | GAGGAG | 3 cut(s) | 133, 518, 2583 |
| BseSI | GKGCMC | 5 cut(s) | 1262, 1627, 2430, 2753, 2802 |
| BseX3I | CGGCCG | 1 cut(s) | 2607 |
| BseXI | GCAGC | 7 cut(s) | 479, 719, 1117, 1220, 2014, 2096, 3116 |
| BsgI | GTGCAG | 1 cut(s) | 625 |
| BshNI | GGYRCC | 4 cut(s) | 1201, 1543, 1624, 2771 |
| BshTI | ACCGGT | 2 cut(s) | 1241, 1262 |
| BshVI | ATCGAT | 1 cut(s) | 2324 |
| BsiHKAI | GWGCWC | 3 cut(s) | 574, 1262, 3165 |
| BsiHKCI | CYCGRG | 7 cut(s) | 618, 2096, 2154, 2168, 2473, 3013, 3054 |
| BsiWI | CGTACG | 2 cut(s) | 317, 714 |
| BsmAI | GTCTC | 9 cut(s) | 349, 460, 614, 767, 832, 1489, 1725, 2852, 3071 |
| BsmBI | CGTCTC | 3 cut(s) | 349, 767, 3071 |
| BsmI | GAATGC | 1 cut(s) | 794 |
| Bso31I | GGTCTC | 2 cut(s) | 1725, 2852 |
| BsoBI | CYCGRG | 7 cut(s) | 618, 2096, 2154, 2168, 2473, 3013, 3054 |
| Bsp119I | TTCGAA | 1 cut(s) | 210 |
| Bsp120I | GGGCCC | 1 cut(s) | 2749 |
| Bsp13I | TCCGGA | 2 cut(s) | 1062, 1324 |
| Bsp1407I | TGTACA | 1 cut(s) | 1952 |
| Bsp19I | CCATGG | 1 cut(s) | 9 |
| Bsp68I | TCGCGA | 1 cut(s) | 2042 |
| BspCNI | CTCAG | 5 cut(s) | 1068, 1749, 2748, 3264, 3374 |
| BspDI | ATCGAT | 1 cut(s) | 2324 |
| BspEI | TCCGGA | 2 cut(s) | 1062, 1324 |
| BspHI | TCATGA | 1 cut(s) | 1003 |
| BspMAI | CTGCAG | 1 cut(s) | 117 |
| BspMI | ACCTGC | 2 cut(s) | 497, 2087 |
| BspPI | GGATC | 7 cut(s) | 797, 1026, 1174, 1187, 1364, 1519, 2011 |
| BspT104I | TTCGAA | 1 cut(s) | 210 |
| BspT107I | GGYRCC | 4 cut(s) | 1201, 1543, 1624, 2771 |
| BspTNI | GGTCTC | 2 cut(s) | 1725, 2852 |
| BsrBI | CCGCTC | 3 cut(s) | 2165, 2579, 3276 |
| BsrDI | GCAATG | 2 cut(s) | 142, 1872 |
| BsrFI | RCCGGY | 9 cut(s) | 544, 1241, 1262, 1283, 1540, 2122, 2186, 2996, 3118 |
| BsrGI | TGTACA | 1 cut(s) | 1952 |
| BsrI | ACTGG | 3 cut(s) | 39, 810, 2766 |
| BssAI | RCCGGY | 9 cut(s) | 544, 1241, 1262, 1283, 1540, 2122, 2186, 2996, 3118 |
| BssHII | GCGCGC | 7 cut(s) | 1826, 2224, 2251, 2253, 3107, 3109, 3138 |
| BssSI | CACGAG | 3 cut(s) | 457, 573, 2818 |
| BssT1I | CCWWGG | 8 cut(s) | 9, 1096, 1226, 1419, 1860, 2203, 2838, 3194 |
| Bst2BI | CACGAG | 3 cut(s) | 457, 573, 2818 |
| Bst2UI | CCWGG | 6 cut(s) | 797, 1298, 1508, 1632, 2438, 2630 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 598 |
| BstAUI | TGTACA | 1 cut(s) | 1952 |
| BstBAI | YACGTR | 2 cut(s) | 321, 921 |
| BstBI | TTCGAA | 1 cut(s) | 210 |
| BstDEI | CTNAG | 8 cut(s) | 1076, 1687, 1736, 1784, 1805, 2735, 3272, 3361 |
| BstDSI | CCRYGG | 3 cut(s) | 9, 1771, 3072 |
| BstEII | GGTNACC | 1 cut(s) | 2642 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1174 |
| BstF5I | GGATG | 8 cut(s) | 473, 647, 1092, 1429, 1525, 1764, 2955, 2983 |
| BstH2I | RGCGCY | 2 cut(s) | 2775, 2827 |
| BstMAI | GTCTC | 9 cut(s) | 349, 460, 614, 767, 832, 1489, 1725, 2852, 3071 |
| BstNI | CCWGG | 6 cut(s) | 797, 1298, 1508, 1632, 2438, 2630 |
| BstNSI | RCATGY | 3 cut(s) | 54, 850, 3210 |
| BstPI | GGTNACC | 1 cut(s) | 2642 |
| BstSFI | CTRYAG | 2 cut(s) | 113, 1854 |
| BstSLI | GKGCMC | 5 cut(s) | 1262, 1627, 2430, 2753, 2802 |
| BstV1I | GCAGC | 7 cut(s) | 479, 719, 1117, 1220, 2014, 2096, 3116 |
| BstV2I | GAAGAC | 4 cut(s) | 661, 1468, 1880, 2265 |
| BstX2I | RGATCY | 1 cut(s) | 1179 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1036 |
| BstYI | RGATCY | 1 cut(s) | 1179 |
| BstZI | CGGCCG | 1 cut(s) | 2607 |
| Bsu15I | ATCGAT | 1 cut(s) | 2324 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3361 |
| BsuTUI | ATCGAT | 1 cut(s) | 2324 |
| BtgI | CCRYGG | 3 cut(s) | 9, 1771, 3072 |
| BtgZI | GCGATG | 3 cut(s) | 92, 2727, 2976 |
| BtrI | CACGTC | 2 cut(s) | 359, 2114 |
| BtsCI | GGATG | 8 cut(s) | 473, 647, 1092, 1429, 1525, 1764, 2955, 2983 |
| BtsIMutI | CAGTG | 3 cut(s) | 1833, 2051, 2759 |
| BtuMI | TCGCGA | 1 cut(s) | 2042 |
| BveI | ACCTGC | 2 cut(s) | 497, 2087 |
| CciI | TCATGA | 1 cut(s) | 1003 |
| Cfr10I | RCCGGY | 9 cut(s) | 544, 1241, 1262, 1283, 1540, 2122, 2186, 2996, 3118 |
| Cfr42I | CCGCGG | 2 cut(s) | 1774, 3075 |
| Cfr9I | CCCGGG | 3 cut(s) | 2154, 2168, 3054 |
| ClaI | ATCGAT | 1 cut(s) | 2324 |
| CpoI | CGGWCCG | 3 cut(s) | 1244, 2744, 2999 |
| CsiI | ACCWGGT | 1 cut(s) | 795 |
| Csp6I | GTAC | 8 cut(s) | 318, 425, 715, 1156, 1953, 2175, 2876, 3116 |
| CspAI | ACCGGT | 2 cut(s) | 1241, 1262 |
| CspI | CGGWCCG | 3 cut(s) | 1244, 2744, 2999 |
| CviAII | CATG | 8 cut(s) | 10, 51, 329, 843, 847, 1004, 1677, 3207 |
| CviQI | GTAC | 8 cut(s) | 318, 425, 715, 1156, 1953, 2175, 2876, 3116 |
| DdeI | CTNAG | 8 cut(s) | 1076, 1687, 1736, 1784, 1805, 2735, 3272, 3361 |
| DinI | GGCGCC | 1 cut(s) | 2773 |
| DraI | TTTAAA | 1 cut(s) | 3414 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 777, 3198 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2630 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 777, 3198 |
| EaeI | YGGCCR | 8 cut(s) | 1309, 1679, 1774, 1797, 1863, 2607, 3045, 3153 |
| EagI | CGGCCG | 1 cut(s) | 2607 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2630 |
| EciI | GGCGGA | 6 cut(s) | 1236, 1527, 1532, 2505, 2757, 2991 |
| Ecl136II | GAGCTC | 1 cut(s) | 3163 |
| EclXI | CGGCCG | 1 cut(s) | 2607 |
| Eco130I | CCWWGG | 8 cut(s) | 9, 1096, 1226, 1419, 1860, 2203, 2838, 3194 |
| Eco24I | GRGCYC | 9 cut(s) | 35, 982, 1131, 1459, 2140, 2163, 2753, 2792, 3165 |
| Eco31I | GGTCTC | 2 cut(s) | 1725, 2852 |
| Eco32I | GATATC | 1 cut(s) | 2308 |
| Eco52I | CGGCCG | 1 cut(s) | 2607 |
| Eco53kI | GAGCTC | 1 cut(s) | 3163 |
| Eco57I | CTGAAG | 1 cut(s) | 674 |
| Eco81I | CCTNAGG | 1 cut(s) | 3361 |
| Eco88I | CYCGRG | 7 cut(s) | 618, 2096, 2154, 2168, 2473, 3013, 3054 |
| Eco91I | GGTNACC | 1 cut(s) | 2642 |
| EcoICRI | GAGCTC | 1 cut(s) | 3163 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1174 |
| EcoO109I | RGGNCCY | 1 cut(s) | 3247 |
| EcoO65I | GGTNACC | 1 cut(s) | 2642 |
| EcoRI | GAATTC | 1 cut(s) | 1899 |
| EcoRII | CCWGG | 6 cut(s) | 795, 1296, 1506, 1630, 2436, 2628 |
| EcoRV | GATATC | 1 cut(s) | 2308 |
| EcoT14I | CCWWGG | 8 cut(s) | 9, 1096, 1226, 1419, 1860, 2203, 2838, 3194 |
| EcoT22I | ATGCAT | 1 cut(s) | 848 |
| EcoT38I | GRGCYC | 9 cut(s) | 35, 982, 1131, 1459, 2140, 2163, 2753, 2792, 3165 |
| EgeI | GGCGCC | 1 cut(s) | 2773 |
| EheI | GGCGCC | 1 cut(s) | 2773 |
| ErhI | CCWWGG | 8 cut(s) | 9, 1096, 1226, 1419, 1860, 2203, 2838, 3194 |
| Esp3I | CGTCTC | 3 cut(s) | 349, 767, 3071 |
| FaeI | CATG | 8 cut(s) | 13, 54, 332, 846, 850, 1007, 1680, 3210 |
| FatI | CATG | 8 cut(s) | 9, 50, 328, 842, 846, 1003, 1676, 3206 |
| FauNDI | CATATG | 1 cut(s) | 819 |
| FblI | GTMKAC | 6 cut(s) | 265, 743, 971, 1238, 2512, 3086 |
| FokI | GGATG | 8 cut(s) | 480, 654, 1079, 1436, 1532, 1751, 2962, 2990 |
| FriOI | GRGCYC | 9 cut(s) | 35, 982, 1131, 1459, 2140, 2163, 2753, 2792, 3165 |
| FspBI | CTAG | 8 cut(s) | 47, 234, 909, 1481, 1749, 1905, 2703, 3333 |
| FspI | TGCGCA | 2 cut(s) | 463, 2083 |
| GsuI | CTGGAG | 1 cut(s) | 2743 |
| HaeII | RGCGCY | 2 cut(s) | 2775, 2827 |
| Hin1II | CATG | 8 cut(s) | 13, 54, 332, 846, 850, 1007, 1680, 3210 |
| HincII | GTYRAC | 9 cut(s) | 266, 744, 972, 1239, 1723, 1933, 2513, 3087, 3220 |
| HindII | GTYRAC | 9 cut(s) | 266, 744, 972, 1239, 1723, 1933, 2513, 3087, 3220 |
| HindIII | AAGCTT | 1 cut(s) | 271 |
| HpaI | GTTAAC | 1 cut(s) | 1723 |
| HphI | GGTGA | 4 cut(s) | 182, 2003, 2795, 3272 |
| HpyF3I | CTNAG | 8 cut(s) | 1076, 1687, 1736, 1784, 1805, 2735, 3272, 3361 |
| Hsp92II | CATG | 8 cut(s) | 13, 54, 332, 846, 850, 1007, 1680, 3210 |
| KasI | GGCGCC | 1 cut(s) | 2771 |
| KflI | GGGWCCC | 1 cut(s) | 3247 |
| Kpn2I | TCCGGA | 2 cut(s) | 1062, 1324 |
| KroI | GCCGGC | 4 cut(s) | 544, 1283, 1540, 2122 |
| KroNI | GCCGGC | 4 cut(s) | 546, 1285, 1542, 2124 |
| KspAI | GTTAAC | 1 cut(s) | 1723 |
| KspI | CCGCGG | 2 cut(s) | 1774, 3075 |
| Lsp1109I | GCAGC | 7 cut(s) | 479, 719, 1117, 1220, 2014, 2096, 3116 |
| LweI | GCATC | 7 cut(s) | 416, 632, 1054, 1489, 2330, 2953, 3384 |
| MabI | ACCWGGT | 1 cut(s) | 795 |
| MaeI | CTAG | 8 cut(s) | 47, 234, 909, 1481, 1749, 1905, 2703, 3333 |
| MaeIII | GTNAC | 4 cut(s) | 1522, 2443, 2642, 2705 |
| MauBI | CGCGCGCG | 1 cut(s) | 2253 |
| MbiI | CCGCTC | 3 cut(s) | 2165, 2579, 3276 |
| MboII | GAAGA | 9 cut(s) | 69, 94, 185, 661, 1051, 1473, 1880, 2265, 2341 |
| MfeI | CAATTG | 1 cut(s) | 1878 |
| MflI | RGATCY | 1 cut(s) | 1179 |
| MluI | ACGCGT | 2 cut(s) | 441, 711 |
| Mly113I | GGCGCC | 1 cut(s) | 2772 |
| MlyI | GAGTC | 9 cut(s) | 1145, 1528, 1859, 1925, 2286, 2394, 2922, 3208, 3225 |
| MmeI | TCCRAC | 3 cut(s) | 1201, 2562, 2955 |
| Mph1103I | ATGCAT | 1 cut(s) | 848 |
| MreI | CGCCGGCG | 1 cut(s) | 544 |
| MroI | TCCGGA | 2 cut(s) | 1062, 1324 |
| MroNI | GCCGGC | 4 cut(s) | 544, 1283, 1540, 2122 |
| MroXI | GAANNNNTTC | 3 cut(s) | 274, 864, 2105 |
| MslI | CAYNNNNRTG | 2 cut(s) | 49, 847 |
| MspA1I | CMGCKG | 5 cut(s) | 732, 1773, 2650, 2739, 3074 |
| MunI | CAATTG | 1 cut(s) | 1878 |
| Mva1269I | GAATGC | 1 cut(s) | 794 |
| MvaI | CCWGG | 6 cut(s) | 797, 1298, 1508, 1632, 2438, 2630 |
| NaeI | GCCGGC | 4 cut(s) | 546, 1285, 1542, 2124 |
| NarI | GGCGCC | 1 cut(s) | 2772 |
| NcoI | CCATGG | 1 cut(s) | 9 |
| NdeI | CATATG | 1 cut(s) | 819 |
| NgoMIV | GCCGGC | 4 cut(s) | 544, 1283, 1540, 2122 |
| NlaIII | CATG | 8 cut(s) | 13, 54, 332, 846, 850, 1007, 1680, 3210 |
| NmeAIII | GCCGAG | 6 cut(s) | 2119, 2276, 2291, 2447, 2579, 2635 |
| NmuCI | GTSAC | 1 cut(s) | 2443 |
| NruI | TCGCGA | 1 cut(s) | 2042 |
| NsbI | TGCGCA | 2 cut(s) | 463, 2083 |
| NsiI | ATGCAT | 1 cut(s) | 848 |
| NspI | RCATGY | 3 cut(s) | 54, 850, 3210 |
| NspV | TTCGAA | 1 cut(s) | 210 |
| PagI | TCATGA | 1 cut(s) | 1003 |
| PauI | GCGCGC | 7 cut(s) | 1826, 2224, 2251, 2253, 3107, 3109, 3138 |
| PcsI | WCGNNNNNNNCGW | 7 cut(s) | 364, 710, 714, 1973, 2031, 2140, 3092 |
| PctI | GAATGC | 1 cut(s) | 794 |
| PdiI | GCCGGC | 4 cut(s) | 546, 1285, 1542, 2124 |
| PdmI | GAANNNNTTC | 3 cut(s) | 274, 864, 2105 |
| PfeI | GAWTC | 4 cut(s) | 1000, 1658, 2368, 2696 |
| Pfl23II | CGTACG | 2 cut(s) | 317, 714 |
| PflFI | GACNNNGTC | 3 cut(s) | 1937, 2808, 3082 |
| PfoI | TCCNGGA | 1 cut(s) | 579 |
| PinAI | ACCGGT | 2 cut(s) | 1241, 1262 |
| Ple19I | CGATCG | 4 cut(s) | 685, 693, 3009, 3095 |
| PleI | GAGTC | 9 cut(s) | 1144, 1528, 1858, 1924, 2286, 2393, 2921, 3207, 3224 |
| PluTI | GGCGCC | 1 cut(s) | 2775 |
| PpsI | GAGTC | 9 cut(s) | 1144, 1528, 1858, 1924, 2286, 2393, 2921, 3207, 3224 |
| Ppu21I | YACGTR | 2 cut(s) | 321, 921 |
| PpuMI | RGGWCCY | 1 cut(s) | 3247 |
| PshBI | ATTAAT | 1 cut(s) | 1434 |
| Psp124BI | GAGCTC | 1 cut(s) | 3165 |
| Psp1406I | AACGTT | 1 cut(s) | 503 |
| Psp5II | RGGWCCY | 1 cut(s) | 3247 |
| Psp6I | CCWGG | 6 cut(s) | 795, 1296, 1506, 1630, 2436, 2628 |
| PspEI | GGTNACC | 1 cut(s) | 2642 |
| PspGI | CCWGG | 6 cut(s) | 795, 1296, 1506, 1630, 2436, 2628 |
| PspLI | CGTACG | 2 cut(s) | 317, 714 |
| PspOMI | GGGCCC | 1 cut(s) | 2749 |
| PspPPI | RGGWCCY | 1 cut(s) | 3247 |
| PstI | CTGCAG | 1 cut(s) | 117 |
| PsuI | RGATCY | 1 cut(s) | 1179 |
| PsyI | GACNNNGTC | 3 cut(s) | 1937, 2808, 3082 |
| PteI | GCGCGC | 7 cut(s) | 1826, 2224, 2251, 2253, 3107, 3109, 3138 |
| PvuI | CGATCG | 4 cut(s) | 685, 693, 3009, 3095 |
| RruI | TCGCGA | 1 cut(s) | 2042 |
| RsaI | GTAC | 8 cut(s) | 319, 426, 716, 1157, 1954, 2176, 2877, 3117 |
| RsaNI | GTAC | 8 cut(s) | 318, 425, 715, 1156, 1953, 2175, 2876, 3116 |
| RseI | CAYNNNNRTG | 2 cut(s) | 49, 847 |
| Rsr2I | CGGWCCG | 3 cut(s) | 1244, 2744, 2999 |
| RsrII | CGGWCCG | 3 cut(s) | 1244, 2744, 2999 |
| SacI | GAGCTC | 1 cut(s) | 3165 |
| SacII | CCGCGG | 2 cut(s) | 1774, 3075 |
| SalI | GTCGAC | 6 cut(s) | 264, 742, 970, 1237, 2511, 3085 |
| SchI | GAGTC | 9 cut(s) | 1145, 1528, 1859, 1925, 2286, 2394, 2922, 3208, 3225 |
| SexAI | ACCWGGT | 1 cut(s) | 795 |
| SfaNI | GCATC | 7 cut(s) | 416, 632, 1054, 1489, 2330, 2953, 3384 |
| SfcI | CTRYAG | 2 cut(s) | 113, 1854 |
| SfoI | GGCGCC | 1 cut(s) | 2773 |
| Sfr303I | CCGCGG | 2 cut(s) | 1774, 3075 |
| SfuI | TTCGAA | 1 cut(s) | 210 |
| SgrAI | CRCCGGYG | 2 cut(s) | 544, 2186 |
| SgrBI | CCGCGG | 2 cut(s) | 1774, 3075 |
| SgrDI | CGTCGACG | 2 cut(s) | 264, 3085 |
| SmaI | CCCGGG | 3 cut(s) | 2156, 2170, 3056 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 49, 847 |
| SrfI | GCCCGGGC | 1 cut(s) | 3056 |
| SspDI | GGCGCC | 1 cut(s) | 2771 |
| SspMI | CTAG | 8 cut(s) | 47, 234, 909, 1481, 1749, 1905, 2703, 3333 |
| SstI | GAGCTC | 1 cut(s) | 3165 |
| StyI | CCWWGG | 8 cut(s) | 9, 1096, 1226, 1419, 1860, 2203, 2838, 3194 |
| TaqII | GACCGA | 5 cut(s) | 52, 602, 1322, 2876, 3040 |
| TatI | WGTACW | 2 cut(s) | 1155, 1952 |
| TfiI | GAWTC | 4 cut(s) | 1000, 1658, 2368, 2696 |
| TscAI | CASTG | 3 cut(s) | 1840, 2058, 2766 |
| TseFI | GTSAC | 1 cut(s) | 2443 |
| TseI | GCWGC | 7 cut(s) | 492, 732, 1105, 1208, 2027, 2084, 3104 |
| Tsp45I | GTSAC | 1 cut(s) | 2443 |
| TspDTI | ATGAA | 9 cut(s) | 95, 424, 873, 992, 1404, 1420, 2057, 2342, 2907 |
| TspGWI | ACGGA | 8 cut(s) | 386, 616, 749, 1031, 1632, 1708, 2318, 3204 |
| TspMI | CCCGGG | 3 cut(s) | 2154, 2168, 3054 |
| TspRI | CASTG | 3 cut(s) | 1840, 2058, 2766 |
| Tth111I | GACNNNGTC | 3 cut(s) | 1937, 2808, 3082 |
| VneI | GTGCAC | 1 cut(s) | 1258 |
| VspI | ATTAAT | 1 cut(s) | 1434 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1174 |
| XapI | RAATTY | 3 cut(s) | 864, 1899, 2653 |
| XbaI | TCTAGA | 1 cut(s) | 908 |
| XceI | RCATGY | 3 cut(s) | 54, 850, 3210 |
| XmaI | CCCGGG | 3 cut(s) | 2154, 2168, 3054 |
| XmiI | GTMKAC | 6 cut(s) | 265, 743, 971, 1238, 2512, 3086 |
| XmnI | GAANNNNTTC | 3 cut(s) | 274, 864, 2105 |
| XspI | CTAG | 8 cut(s) | 47, 234, 909, 1481, 1749, 1905, 2703, 3333 |
| ZraI | GACGTC | 2 cut(s) | 779, 2038 |
| Zsp2I | ATGCAT | 1 cut(s) | 848 |