Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00000280

Orthogroup ID

OG0002208

Physical Location & Seq

Genomic Coordinates Reverse (-)

42625 .. 44274

Gene Structure 1650 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom280g00120.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 970 bp

CTTTTCGTTTTTTTTTTTTTTTTTTCGAAAAAAAAAAAAAATTTGTTTTCATAGAACAAATTTTTCGTTTTCAAATAAATGGGGGAAAATGGTTTTAAGCGGGGTGGAAAAACGTTTTAAAAGGGCGGGTTGGAAAATATTTTTCCTAAAAATAGCATGGGTTATTTGTTGCAGCAGGGGTGGGAAGATTTTGGGGTGGGATTGCTGGGAATGGGTTTTGTTTTTCGGCATGCATGTTTTCACTCGGTCGTCCTCGATTGTTGGTATTAGGGTCTTCCACCCCGTTGCATGTCGAAGCGAGTTGTGCGGGTCGACGAGCTTTTCGGTAGCGTTGAACTGTTCGGTTGTCCGGTCGCTTCGTACGTGTTTCCATGCTAGCGGTGCGGTCGGTCTACTGGCGTATTTGCATCAGACGCATCCTTTACGGGGCTGGTCGGAGTGTTTTTCGTCGGGCGGTGCTGGGTTTAGCTACGCGACGGCGTATGAGTGGTATTGGGTTGTATTCGACGGCAGGCTCCGTGCTTCGGCATCGAACTGTCGGCTCGTACCCCGCTTCATCGACGCGTCGAGATTCGTCTCGTGCGCAGGATGGGTTTCTGTTTTGGCTACCTGCTGGCGGGAGGAGACATCGTGGCGGTGTCGTGTCCGGACGAGCGCATCGTTGCGGTGCAGTTTCGGTCCTCGGGTTTCCGTTCGACATCTCGGATGCGGAACGCTGAAGGGGCGGTGGGTCTTCACGACCTCGATGTCCGATCGAGCCTTGTCGCTCGACGCGTACGACCGTCGCGCCGTGCGAGCCGTCGACGTCAAGATAAAGGTCGACGCGGGCTCTGCCGTTGCTCTGATGATTCATGATAACTCGACGGATCGCACAGCCATCGTGCTGGCGACGCATCATTCAAATATCTGCCTATCAACTTTCGATGGTAGGATAGTGGCTACCATGGTGGTGACGGGTGACGGAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

323

Amino Acids

35.12

Weight (kDa)

10.24

Isoelectric Point (pI)

56.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01021
pyrus_communis	pycom10g22490 pycom12554g00020 pycom12554g00070 pycom12555g00010 pycom12555g00110 pycom12555g00120 pycom12555g00200 pycom12597g00030 pycom12597g00040 pycom12597g00050 pycom2132g00040 pycom2132g00050 pycom2158g00030 pycom2158g00040 pycom2246g00010 pycom2246g00020 pycom2246g00030 pycom2246g00040 pycom2246g00090 pycom2246g00180 pycom2246g00200 pycom2247g00030 pycom2247g00060 pycom2303g00020 pycom2303g00060 pycom2303g00100 pycom2303g00130 pycom2303g00160 pycom2575g00010 pycom2575g00050 pycom280g00090 pycom280g00100 pycom280g00120 pycom420g00340 pycom520g01340 pycom553g00010 pycom553g00020 pycom581g00110 pycom961g00010
rosa_roxburghii	Rroxscaffold_118G00451770 Rroxscaffold_31G00438260 Rroxscaffold_6G00387770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	746
AatII	GACGTC	1 cut(s)	808
Acc16I	TGCGCA	1 cut(s)	584
Acc36I	ACCTGC	1 cut(s)	618
AccI	GTMKAC	4 cut(s)	312, 392, 802, 820
AccII	CGCG	5 cut(s)	474, 564, 774, 787, 825
AccIII	TCCGGA	1 cut(s)	646
AclI	AACGTT	1 cut(s)	113
AclWI	GGATC	1 cut(s)	874
AcsI	RAATTY	2 cut(s)	40, 59
AcuI	CTGAAG	1 cut(s)	738
AcyI	GRCGYC	1 cut(s)	805
AfaI	GTAC	3 cut(s)	362, 547, 777
AfiI	CCNNNNNNNGG	3 cut(s)	426, 524, 616
AflIII	ACRYGT	3 cut(s)	363, 562, 772
AgsI	TTSAA	3 cut(s)	73, 335, 901
AluBI	AGCT	2 cut(s)	319, 469
AluI	AGCT	2 cut(s)	319, 469
Alw26I	GTCTC	2 cut(s)	581, 618
AlwI	GGATC	1 cut(s)	874
Ama87I	CYCGRG	1 cut(s)	682
Aor13HI	TCCGGA	1 cut(s)	646
ApeKI	GCWGC	1 cut(s)	172
ApoI	RAATTY	2 cut(s)	40, 59
ArsI	GACNNNNNNTTYG	2 cut(s)	305, 337
AspLEI	GCGC	3 cut(s)	585, 657, 789
AspS9I	GGNCC	1 cut(s)	678
AsuHPI	GGTGA	2 cut(s)	962, 969
AsuII	TTCGAA	1 cut(s)	26
AsuNHI	GCTAGC	1 cut(s)	375
AvaI	CYCGRG	1 cut(s)	682
AvaII	GGWCC	1 cut(s)	678
BanII	GRGCYC	1 cut(s)	831
BauI	CACGAG	1 cut(s)	578
BbsI	GAAGAC	2 cut(s)	266, 725
BbvI	GCAGC	1 cut(s)	184
BccI	CCATC	3 cut(s)	583, 885, 918
BceAI	ACGGC	5 cut(s)	493, 524, 774, 783, 819
BcgI	CGANNNNNNTGC	2 cut(s)	860, 894
BcoDI	GTCTC	2 cut(s)	581, 618
BfaI	CTAG	1 cut(s)	376
BfuAI	ACCTGC	1 cut(s)	618
BisI	GCNGC	1 cut(s)	173
BlsI	GCNGC	1 cut(s)	174
Bme18I	GGWCC	1 cut(s)	678
BmeT110I	CYCGRG	1 cut(s)	682
BmgT120I	GGNCC	1 cut(s)	678
BmiI	GGNNCC	1 cut(s)	516
BmsI	GCATC	6 cut(s)	416, 425, 537, 666, 696, 902
BmtI	GCTAGC	1 cut(s)	379
BpiI	GAAGAC	2 cut(s)	266, 725
Bpu14I	TTCGAA	1 cut(s)	26
BsaAI	YACGTR	1 cut(s)	364
BsaHI	GRCGYC	1 cut(s)	805
BsaJI	CCNNGG	2 cut(s)	681, 943
BsaWI	WCCGGW	2 cut(s)	349, 646
BsaXI	ACNNNNNCTCC	2 cut(s)	615, 645
Bsc4I	CCNNNNNNNGG	3 cut(s)	426, 524, 616
Bse1I	ACTGG	1 cut(s)	400
BseAI	TCCGGA	1 cut(s)	646
BseDI	CCNNGG	2 cut(s)	681, 943
BseGI	GGATG	3 cut(s)	416, 594, 711
BseLI	CCNNNNNNNGG	3 cut(s)	426, 524, 616
BseNI	ACTGG	1 cut(s)	400
BseRI	GAGGAG	1 cut(s)	636
BseXI	GCAGC	1 cut(s)	184
BseYI	CCCAGC	2 cut(s)	205, 459
BsgI	GTGCAG	1 cut(s)	689
Bsh1236I	CGCG	5 cut(s)	474, 564, 774, 787, 825
Bsh1285I	CGRYCG	5 cut(s)	249, 354, 388, 755, 782
BsiEI	CGRYCG	5 cut(s)	249, 354, 388, 755, 782
BsiHKCI	CYCGRG	1 cut(s)	682
BsiSI	CCGG	2 cut(s)	350, 647
BsiWI	CGTACG	2 cut(s)	360, 775
BslI	CCNNNNNNNGG	3 cut(s)	426, 524, 616
BsmAI	GTCTC	2 cut(s)	581, 618
BsmBI	CGTCTC	1 cut(s)	581
BsoBI	CYCGRG	1 cut(s)	682
Bsp119I	TTCGAA	1 cut(s)	26
Bsp1286I	GDGCHC	1 cut(s)	831
Bsp13I	TCCGGA	1 cut(s)	646
Bsp143I	GATC	2 cut(s)	752, 866
Bsp19I	CCATGG	1 cut(s)	943
BspEI	TCCGGA	1 cut(s)	646
BspFNI	CGCG	5 cut(s)	474, 564, 774, 787, 825
BspHI	TCATGA	1 cut(s)	851
BspLI	GGNNCC	1 cut(s)	516
BspMI	ACCTGC	1 cut(s)	618
BspOI	GCTAGC	1 cut(s)	379
BspPI	GGATC	1 cut(s)	874
BspT104I	TTCGAA	1 cut(s)	26
BsrI	ACTGG	1 cut(s)	400
BssECI	CCNNGG	2 cut(s)	681, 943
BssMI	GATC	2 cut(s)	752, 866
BssNI	GRCGYC	1 cut(s)	805
BssSI	CACGAG	1 cut(s)	578
BssT1I	CCWWGG	1 cut(s)	943
Bst2BI	CACGAG	1 cut(s)	578
Bst4CI	ACNGT	3 cut(s)	339, 537, 783
BstACI	GRCGYC	1 cut(s)	805
BstBAI	YACGTR	1 cut(s)	364
BstBI	TTCGAA	1 cut(s)	26
BstC8I	GCNNGC	7 cut(s)	231, 377, 513, 615, 796, 827, 886
BstDSI	CCRYGG	1 cut(s)	943
BstF5I	GGATG	3 cut(s)	416, 594, 711
BstFNI	CGCG	5 cut(s)	474, 564, 774, 787, 825
BstHHI	GCGC	3 cut(s)	585, 657, 789
BstKTI	GATC	2 cut(s)	755, 869
BstMAI	GTCTC	2 cut(s)	581, 618
BstMBI	GATC	2 cut(s)	752, 866
BstMCI	CGRYCG	5 cut(s)	249, 354, 388, 755, 782
BstMWI	GCNNNNNNNGC	7 cut(s)	304, 381, 413, 722, 795, 831, 890
BstNSI	RCATGY	3 cut(s)	233, 237, 292
BstUI	CGCG	5 cut(s)	474, 564, 774, 787, 825
BstV1I	GCAGC	1 cut(s)	184
BstV2I	GAAGAC	2 cut(s)	266, 725
BstXI	CCANNNNNNTGG	1 cut(s)	884
BtgI	CCRYGG	1 cut(s)	943
BtsCI	GGATG	3 cut(s)	416, 594, 711
BveI	ACCTGC	1 cut(s)	618
Cac8I	GCNNGC	7 cut(s)	231, 377, 513, 615, 796, 827, 886
CciI	TCATGA	1 cut(s)	851
CfoI	GCGC	3 cut(s)	585, 657, 789
Cfr13I	GGNCC	1 cut(s)	678
CseI	GACGC	6 cut(s)	422, 553, 570, 780, 831, 899
Csp6I	GTAC	3 cut(s)	361, 546, 776
CviAII	CATG	7 cut(s)	157, 230, 234, 289, 372, 852, 944
CviQI	GTAC	3 cut(s)	361, 546, 776
DpnI	GATC	2 cut(s)	754, 868
DpnII	GATC	2 cut(s)	752, 866
DraI	TTTAAA	1 cut(s)	119
DrdI	GACNNNNNNGTC	1 cut(s)	746
DseDI	GACNNNNNNGTC	1 cut(s)	746
Eco130I	CCWWGG	1 cut(s)	943
Eco24I	GRGCYC	1 cut(s)	831
Eco47I	GGWCC	1 cut(s)	678
Eco57I	CTGAAG	1 cut(s)	738
Eco88I	CYCGRG	1 cut(s)	682
EcoT14I	CCWWGG	1 cut(s)	943
EcoT22I	ATGCAT	1 cut(s)	235
EcoT38I	GRGCYC	1 cut(s)	831
ErhI	CCWWGG	1 cut(s)	943
Esp3I	CGTCTC	1 cut(s)	581
FaeI	CATG	7 cut(s)	160, 233, 237, 292, 375, 855, 947
FaiI	YATR	9 cut(s)	52, 158, 231, 235, 290, 373, 484, 853, 945
FatI	CATG	7 cut(s)	156, 229, 233, 288, 371, 851, 943
FauI	CCCGC	6 cut(s)	93, 119, 300, 558, 610, 818
FblI	GTMKAC	4 cut(s)	312, 392, 802, 820
Fnu4HI	GCNGC	1 cut(s)	173
FokI	GGATG	3 cut(s)	403, 601, 718
FriOI	GRGCYC	1 cut(s)	831
Fsp4HI	GCNGC	1 cut(s)	173
FspBI	CTAG	1 cut(s)	376
FspI	TGCGCA	1 cut(s)	584
GlaI	GCGC	3 cut(s)	584, 656, 788
GluI	GCNGC	1 cut(s)	173
GsaI	CCCAGC	2 cut(s)	209, 463
HapII	CCGG	2 cut(s)	350, 647
HgaI	GACGC	6 cut(s)	422, 553, 570, 780, 831, 899
HhaI	GCGC	3 cut(s)	585, 657, 789
Hin1I	GRCGYC	1 cut(s)	805
Hin1II	CATG	7 cut(s)	160, 233, 237, 292, 375, 855, 947
Hin6I	GCGC	3 cut(s)	583, 655, 787
HinP1I	GCGC	3 cut(s)	583, 655, 787
HincII	GTYRAC	3 cut(s)	313, 803, 821
HindII	GTYRAC	3 cut(s)	313, 803, 821
HinfI	GANTC	2 cut(s)	571, 848
HpaII	CCGG	2 cut(s)	350, 647
HphI	GGTGA	2 cut(s)	962, 969
Hpy166II	GTNNAC	4 cut(s)	313, 393, 803, 821
Hpy188I	TCNGA	5 cut(s)	412, 437, 705, 752, 844
Hpy188III	TCNNGA	5 cut(s)	568, 647, 737, 809, 852
Hpy8I	GTNNAC	4 cut(s)	313, 393, 803, 821
HpyAV	CCTTC	1 cut(s)	713
HpyCH4III	ACNGT	3 cut(s)	339, 537, 783
HpyCH4IV	ACGT	3 cut(s)	113, 363, 805
HpyCH4V	TGCA	5 cut(s)	172, 233, 288, 407, 670
HpyF10VI	GCNNNNNNNGC	7 cut(s)	304, 381, 413, 722, 795, 831, 890
HpySE526I	ACGT	3 cut(s)	113, 363, 805
Hsp92I	GRCGYC	1 cut(s)	805
Hsp92II	CATG	7 cut(s)	160, 233, 237, 292, 375, 855, 947
HspAI	GCGC	3 cut(s)	583, 655, 787
Kpn2I	TCCGGA	1 cut(s)	646
Kzo9I	GATC	2 cut(s)	752, 866
LmnI	GCTCC	1 cut(s)	520
Lsp1109I	GCAGC	1 cut(s)	184
LweI	GCATC	6 cut(s)	416, 425, 537, 666, 696, 902
MaeI	CTAG	1 cut(s)	376
MaeII	ACGT	3 cut(s)	113, 363, 805
MaeIII	GTNAC	2 cut(s)	950, 957
MalI	GATC	2 cut(s)	754, 868
MboI	GATC	2 cut(s)	752, 866
MboII	GAAGA	3 cut(s)	197, 266, 725
MhlI	GDGCHC	1 cut(s)	831
MluCI	AATT	2 cut(s)	40, 59
MluI	ACGCGT	2 cut(s)	562, 772
MmeI	TCCRAC	2 cut(s)	111, 415
MnlI	CCTC	4 cut(s)	263, 614, 691, 752
Mph1103I	ATGCAT	1 cut(s)	235
MroI	TCCGGA	1 cut(s)	646
MseI	TTAA	2 cut(s)	96, 118
MslI	CAYNNNNRTG	1 cut(s)	948
MspI	CCGG	2 cut(s)	350, 647
MvnI	CGCG	5 cut(s)	474, 564, 774, 787, 825
MwoI	GCNNNNNNNGC	7 cut(s)	304, 381, 413, 722, 795, 831, 890
NcoI	CCATGG	1 cut(s)	943
NdeII	GATC	2 cut(s)	752, 866
NheI	GCTAGC	1 cut(s)	375
NlaIII	CATG	7 cut(s)	160, 233, 237, 292, 375, 855, 947
NlaIV	GGNNCC	1 cut(s)	516
NmuCI	GTSAC	2 cut(s)	950, 957
NsbI	TGCGCA	1 cut(s)	584
NsiI	ATGCAT	1 cut(s)	235
NspI	RCATGY	3 cut(s)	233, 237, 292
NspV	TTCGAA	1 cut(s)	26
PaeI	GCATGC	1 cut(s)	233
PagI	TCATGA	1 cut(s)	851
PcsI	WCGNNNNNNNCGW	5 cut(s)	360, 657, 771, 775, 791
PfeI	GAWTC	2 cut(s)	571, 848
Pfl23II	CGTACG	2 cut(s)	360, 775
PkrI	GCNGC	1 cut(s)	174
Ple19I	CGATCG	1 cut(s)	755
Ppu21I	YACGTR	1 cut(s)	364
Psp1406I	AACGTT	1 cut(s)	113
PspFI	CCCAGC	2 cut(s)	205, 459
PspLI	CGTACG	2 cut(s)	360, 775
PspN4I	GGNNCC	1 cut(s)	516
PspPI	GGNCC	1 cut(s)	678
PvuI	CGATCG	1 cut(s)	755
RsaI	GTAC	3 cut(s)	362, 547, 777
RsaNI	GTAC	3 cut(s)	361, 546, 776
RseI	CAYNNNNRTG	1 cut(s)	948
SalI	GTCGAC	3 cut(s)	311, 801, 819
SaqAI	TTAA	2 cut(s)	96, 118
SatI	GCNGC	1 cut(s)	173
Sau3AI	GATC	2 cut(s)	752, 866
Sau96I	GGNCC	1 cut(s)	678
SduI	GDGCHC	1 cut(s)	831
SetI	ASST	8 cut(s)	116, 321, 366, 471, 612, 744, 808, 820
SfaNI	GCATC	6 cut(s)	416, 425, 537, 666, 696, 902
SfuI	TTCGAA	1 cut(s)	26
SgrDI	CGTCGACG	1 cut(s)	801
SinI	GGWCC	1 cut(s)	678
SmiMI	CAYNNNNRTG	1 cut(s)	948
SphI	GCATGC	1 cut(s)	233
Sse9I	AATT	2 cut(s)	40, 59
SspI	AATATT	1 cut(s)	139
SspMI	CTAG	1 cut(s)	376
StyI	CCWWGG	1 cut(s)	943
TaaI	ACNGT	3 cut(s)	339, 537, 783
TaiI	ACGT	3 cut(s)	116, 366, 808
TaqII	GACCGA	3 cut(s)	235, 378, 666
TasI	AATT	2 cut(s)	40, 59
TfiI	GAWTC	2 cut(s)	571, 848
Tru1I	TTAA	2 cut(s)	96, 118
Tru9I	TTAA	2 cut(s)	96, 118
TseFI	GTSAC	2 cut(s)	950, 957
TseI	GCWGC	1 cut(s)	172
Tsp45I	GTSAC	2 cut(s)	950, 957
TspDTI	ATGAA	3 cut(s)	39, 545, 840
TspGWI	ACGGA	3 cut(s)	507, 680, 879
VpaK11BI	GGWCC	1 cut(s)	678
XapI	RAATTY	2 cut(s)	40, 59
XceI	RCATGY	3 cut(s)	233, 237, 292
XmiI	GTMKAC	4 cut(s)	312, 392, 802, 820
XspI	CTAG	1 cut(s)	376
ZraI	GACGTC	1 cut(s)	806
Zsp2I	ATGCAT	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.