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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 2 cut(s) | 1002, 1032 |
| Acc36I | ACCTGC | 1 cut(s) | 30 |
| AccB1I | GGYRCC | 2 cut(s) | 613, 694 |
| AccBSI | CCGCTC | 3 cut(s) | 1082, 1477, 1496 |
| AccI | GTMKAC | 2 cut(s) | 236, 291 |
| AclI | AACGTT | 1 cut(s) | 36 |
| AclWI | GGATC | 2 cut(s) | 589, 973 |
| AcoI | YGGCCR | 3 cut(s) | 362, 749, 1505 |
| AcsI | RAATTY | 1 cut(s) | 861 |
| AcuI | CTGAAG | 1 cut(s) | 167 |
| AcyI | GRCGYC | 4 cut(s) | 999, 1029, 1059, 1299 |
| AfaI | GTAC | 3 cut(s) | 209, 916, 1093 |
| AflIII | ACRYGT | 1 cut(s) | 204 |
| AgeI | ACCGGT | 2 cut(s) | 294, 315 |
| AgsI | TTSAA | 5 cut(s) | 394, 854, 944, 1250, 1517 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1528 |
| AjnI | CCWGG | 5 cut(s) | 349, 576, 700, 1293, 1526 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 482, 514 |
| AluBI | AGCT | 3 cut(s) | 822, 887, 1512 |
| AluI | AGCT | 3 cut(s) | 822, 887, 1512 |
| Alw21I | GWGCWC | 3 cut(s) | 67, 315, 410 |
| Alw26I | GTCTC | 3 cut(s) | 260, 559, 795 |
| Alw44I | GTGCAC | 1 cut(s) | 311 |
| AlwI | GGATC | 2 cut(s) | 589, 973 |
| Ama87I | CYCGRG | 5 cut(s) | 111, 1012, 1071, 1085, 1330 |
| AoxI | GGCC | 9 cut(s) | 352, 362, 749, 1036, 1044, 1276, 1355, 1478, 1505 |
| ApaLI | GTGCAC | 1 cut(s) | 311 |
| ApeKI | GCWGC | 3 cut(s) | 25, 225, 989 |
| ApoI | RAATTY | 1 cut(s) | 861 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1381, 1413 |
| AseI | ATTAAT | 1 cut(s) | 504 |
| AsiGI | ACCGGT | 2 cut(s) | 294, 315 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1021 |
| AspS9I | GGNCC | 8 cut(s) | 107, 276, 297, 948, 1036, 1044, 1397, 1479 |
| AsuC2I | CCSGG | 8 cut(s) | 74, 366, 646, 1072, 1073, 1086, 1087, 1395 |
| AsuHPI | GGTGA | 1 cut(s) | 965 |
| AvaI | CYCGRG | 5 cut(s) | 111, 1012, 1071, 1085, 1330 |
| AvaII | GGWCC | 5 cut(s) | 107, 276, 297, 948, 1397 |
| BaeGI | GKGCMC | 3 cut(s) | 315, 697, 1287 |
| BanI | GGYRCC | 2 cut(s) | 613, 694 |
| BanII | GRGCYC | 3 cut(s) | 529, 1056, 1080 |
| BauI | CACGAG | 1 cut(s) | 66 |
| BbsI | GAAGAC | 3 cut(s) | 154, 538, 842 |
| Bbv12I | GWGCWC | 3 cut(s) | 67, 315, 410 |
| BbvCI | CCTCAGC | 1 cut(s) | 806 |
| BbvI | GCAGC | 3 cut(s) | 12, 212, 976 |
| BccI | CCATC | 2 cut(s) | 1245, 1347 |
| BceAI | ACGGC | 3 cut(s) | 217, 736, 1293 |
| BciT130I | CCWGG | 5 cut(s) | 351, 578, 702, 1295, 1528 |
| BcnI | CCSGG | 8 cut(s) | 74, 366, 646, 1072, 1073, 1086, 1087, 1395 |
| BcoDI | GTCTC | 3 cut(s) | 260, 559, 795 |
| BfaI | CTAG | 3 cut(s) | 551, 819, 867 |
| BfoI | RGCGCY | 1 cut(s) | 384 |
| BfuAI | ACCTGC | 1 cut(s) | 30 |
| BisI | GCNGC | 6 cut(s) | 26, 83, 226, 971, 990, 1478 |
| BlsI | GCNGC | 6 cut(s) | 27, 84, 227, 972, 991, 1479 |
| Bme18I | GGWCC | 5 cut(s) | 107, 276, 297, 948, 1397 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1528 |
| BmeT110I | CYCGRG | 5 cut(s) | 111, 1012, 1071, 1085, 1330 |
| BmgT120I | GGNCC | 8 cut(s) | 107, 276, 297, 948, 1036, 1044, 1397, 1479 |
| BmiI | GGNNCC | 8 cut(s) | 615, 643, 696, 711, 1037, 1077, 1127, 1398 |
| BmsI | GCATC | 3 cut(s) | 125, 559, 1187 |
| BpiI | GAAGAC | 3 cut(s) | 154, 538, 842 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 71, 103 |
| Bpu10I | CCTNAGC | 1 cut(s) | 806 |
| BpuMI | CCSGG | 8 cut(s) | 74, 366, 646, 1072, 1073, 1086, 1087, 1395 |
| Bsa29I | ATCGAT | 1 cut(s) | 1181 |
| BsaHI | GRCGYC | 4 cut(s) | 999, 1029, 1059, 1299 |
| BsaI | GGTCTC | 1 cut(s) | 795 |
| BsaWI | WCCGGW | 3 cut(s) | 294, 315, 950 |
| Bse118I | RCCGGY | 6 cut(s) | 294, 315, 336, 610, 1038, 1104 |
| Bse3DI | GCAATG | 1 cut(s) | 834 |
| BseBI | CCWGG | 5 cut(s) | 351, 578, 702, 1295, 1528 |
| BseCI | ATCGAT | 1 cut(s) | 1181 |
| BseGI | GGATG | 4 cut(s) | 140, 499, 595, 1369 |
| BseMI | GCAATG | 1 cut(s) | 834 |
| BseMII | CTCAG | 1 cut(s) | 820 |
| BseSI | GKGCMC | 3 cut(s) | 315, 697, 1287 |
| BseX3I | CGGCCG | 1 cut(s) | 1505 |
| BseXI | GCAGC | 3 cut(s) | 12, 212, 976 |
| BsgI | GTGCAG | 1 cut(s) | 118 |
| Bsh1285I | CGRYCG | 8 cut(s) | 178, 186, 214, 240, 295, 320, 1424, 1508 |
| BshFI | GGCC | 9 cut(s) | 354, 364, 751, 1038, 1046, 1278, 1357, 1480, 1507 |
| BshNI | GGYRCC | 2 cut(s) | 613, 694 |
| BshTI | ACCGGT | 2 cut(s) | 294, 315 |
| BshVI | ATCGAT | 1 cut(s) | 1181 |
| BsiEI | CGRYCG | 8 cut(s) | 178, 186, 214, 240, 295, 320, 1424, 1508 |
| BsiHKAI | GWGCWC | 3 cut(s) | 67, 315, 410 |
| BsiHKCI | CYCGRG | 5 cut(s) | 111, 1012, 1071, 1085, 1330 |
| BsiWI | CGTACG | 1 cut(s) | 207 |
| BslFI | GGGAC | 4 cut(s) | 56, 312, 887, 1046 |
| BsmAI | GTCTC | 3 cut(s) | 260, 559, 795 |
| BsmBI | CGTCTC | 1 cut(s) | 260 |
| BsmFI | GGGAC | 4 cut(s) | 56, 312, 887, 1046 |
| BsnI | GGCC | 9 cut(s) | 354, 364, 751, 1038, 1046, 1278, 1357, 1480, 1507 |
| Bso31I | GGTCTC | 1 cut(s) | 795 |
| BsoBI | CYCGRG | 5 cut(s) | 111, 1012, 1071, 1085, 1330 |
| Bsp1286I | GDGCHC | 8 cut(s) | 67, 315, 410, 529, 697, 1056, 1080, 1287 |
| Bsp1407I | TGTACA | 1 cut(s) | 914 |
| Bsp143I | GATC | 8 cut(s) | 175, 183, 536, 581, 831, 965, 1139, 1421 |
| BspANI | GGCC | 9 cut(s) | 354, 364, 751, 1038, 1046, 1278, 1357, 1480, 1507 |
| BspCNI | CTCAG | 1 cut(s) | 819 |
| BspDI | ATCGAT | 1 cut(s) | 1181 |
| BspLI | GGNNCC | 8 cut(s) | 615, 643, 696, 711, 1037, 1077, 1127, 1398 |
| BspMI | ACCTGC | 1 cut(s) | 30 |
| BspPI | GGATC | 2 cut(s) | 589, 973 |
| BspT107I | GGYRCC | 2 cut(s) | 613, 694 |
| BspTNI | GGTCTC | 1 cut(s) | 795 |
| BsrBI | CCGCTC | 3 cut(s) | 1082, 1477, 1496 |
| BsrDI | GCAATG | 1 cut(s) | 834 |
| BsrFI | RCCGGY | 6 cut(s) | 294, 315, 336, 610, 1038, 1104 |
| BsrGI | TGTACA | 1 cut(s) | 914 |
| BssAI | RCCGGY | 6 cut(s) | 294, 315, 336, 610, 1038, 1104 |
| BssMI | GATC | 8 cut(s) | 175, 183, 536, 581, 831, 965, 1139, 1421 |
| BssNI | GRCGYC | 4 cut(s) | 999, 1029, 1059, 1299 |
| BssSI | CACGAG | 1 cut(s) | 66 |
| BssT1I | CCWWGG | 3 cut(s) | 279, 489, 1121 |
| Bst2BI | CACGAG | 1 cut(s) | 66 |
| Bst2UI | CCWGG | 5 cut(s) | 351, 578, 702, 1295, 1528 |
| Bst4CI | ACNGT | 3 cut(s) | 215, 241, 547 |
| BstACI | GRCGYC | 4 cut(s) | 999, 1029, 1059, 1299 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 91, 1454 |
| BstAUI | TGTACA | 1 cut(s) | 914 |
| BstDEI | CTNAG | 2 cut(s) | 757, 806 |
| BstEII | GGTNACC | 1 cut(s) | 1540 |
| BstF5I | GGATG | 4 cut(s) | 140, 499, 595, 1369 |
| BstH2I | RGCGCY | 1 cut(s) | 384 |
| BstKTI | GATC | 8 cut(s) | 178, 186, 539, 584, 834, 968, 1142, 1424 |
| BstMAI | GTCTC | 3 cut(s) | 260, 559, 795 |
| BstMBI | GATC | 8 cut(s) | 175, 183, 536, 581, 831, 965, 1139, 1421 |
| BstMCI | CGRYCG | 8 cut(s) | 178, 186, 214, 240, 295, 320, 1424, 1508 |
| BstNI | CCWGG | 5 cut(s) | 351, 578, 702, 1295, 1528 |
| BstNSI | RCATGY | 1 cut(s) | 1452 |
| BstPI | GGTNACC | 1 cut(s) | 1540 |
| BstSLI | GKGCMC | 3 cut(s) | 315, 697, 1287 |
| BstV1I | GCAGC | 3 cut(s) | 12, 212, 976 |
| BstV2I | GAAGAC | 3 cut(s) | 154, 538, 842 |
| BstZI | CGGCCG | 1 cut(s) | 1505 |
| Bsu15I | ATCGAT | 1 cut(s) | 1181 |
| BsuRI | GGCC | 9 cut(s) | 354, 364, 751, 1038, 1046, 1278, 1357, 1480, 1507 |
| BsuTUI | ATCGAT | 1 cut(s) | 1181 |
| BtsCI | GGATG | 4 cut(s) | 140, 499, 595, 1369 |
| BveI | ACCTGC | 1 cut(s) | 30 |
| Cfr10I | RCCGGY | 6 cut(s) | 294, 315, 336, 610, 1038, 1104 |
| Cfr13I | GGNCC | 8 cut(s) | 107, 276, 297, 948, 1036, 1044, 1397, 1479 |
| Cfr9I | CCCGGG | 2 cut(s) | 1071, 1085 |
| ClaI | ATCGAT | 1 cut(s) | 1181 |
| CpoI | CGGWCCG | 1 cut(s) | 297 |
| CseI | GACGC | 8 cut(s) | 212, 984, 1048, 1099, 1288, 1326, 1355, 1495 |
| Csp6I | GTAC | 3 cut(s) | 208, 915, 1092 |
| CspAI | ACCGGT | 2 cut(s) | 294, 315 |
| CspI | CGGWCCG | 1 cut(s) | 297 |
| CviAII | CATG | 3 cut(s) | 441, 747, 1449 |
| CviQI | GTAC | 3 cut(s) | 208, 915, 1092 |
| DdeI | CTNAG | 2 cut(s) | 757, 806 |
| DpnI | GATC | 8 cut(s) | 177, 185, 538, 583, 833, 967, 1141, 1423 |
| DpnII | GATC | 8 cut(s) | 175, 183, 536, 581, 831, 965, 1139, 1421 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1528 |
| EaeI | YGGCCR | 3 cut(s) | 362, 749, 1505 |
| EagI | CGGCCG | 1 cut(s) | 1505 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1528 |
| EciI | GGCGGA | 4 cut(s) | 289, 597, 602, 1362 |
| EclXI | CGGCCG | 1 cut(s) | 1505 |
| Eco130I | CCWWGG | 3 cut(s) | 279, 489, 1121 |
| Eco24I | GRGCYC | 3 cut(s) | 529, 1056, 1080 |
| Eco31I | GGTCTC | 1 cut(s) | 795 |
| Eco32I | GATATC | 1 cut(s) | 1165 |
| Eco47I | GGWCC | 5 cut(s) | 107, 276, 297, 948, 1397 |
| Eco52I | CGGCCG | 1 cut(s) | 1505 |
| Eco57I | CTGAAG | 1 cut(s) | 167 |
| Eco88I | CYCGRG | 5 cut(s) | 111, 1012, 1071, 1085, 1330 |
| Eco91I | GGTNACC | 1 cut(s) | 1540 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1397 |
| EcoO65I | GGTNACC | 1 cut(s) | 1540 |
| EcoRI | GAATTC | 1 cut(s) | 861 |
| EcoRII | CCWGG | 5 cut(s) | 349, 576, 700, 1293, 1526 |
| EcoRV | GATATC | 1 cut(s) | 1165 |
| EcoT14I | CCWWGG | 3 cut(s) | 279, 489, 1121 |
| EcoT38I | GRGCYC | 3 cut(s) | 529, 1056, 1080 |
| ErhI | CCWWGG | 3 cut(s) | 279, 489, 1121 |
| Esp3I | CGTCTC | 1 cut(s) | 260 |
| FaeI | CATG | 3 cut(s) | 444, 750, 1452 |
| FaqI | GGGAC | 4 cut(s) | 56, 312, 887, 1046 |
| FatI | CATG | 3 cut(s) | 440, 746, 1448 |
| FblI | GTMKAC | 2 cut(s) | 236, 291 |
| Fnu4HI | GCNGC | 6 cut(s) | 26, 83, 226, 971, 990, 1478 |
| FokI | GGATG | 4 cut(s) | 147, 506, 602, 1356 |
| FriOI | GRGCYC | 3 cut(s) | 529, 1056, 1080 |
| Fsp4HI | GCNGC | 6 cut(s) | 26, 83, 226, 971, 990, 1478 |
| FspBI | CTAG | 3 cut(s) | 551, 819, 867 |
| GluI | GCNGC | 6 cut(s) | 26, 83, 226, 971, 990, 1478 |
| HaeII | RGCGCY | 1 cut(s) | 384 |
| HaeIII | GGCC | 9 cut(s) | 354, 364, 751, 1038, 1046, 1278, 1357, 1480, 1507 |
| HgaI | GACGC | 8 cut(s) | 212, 984, 1048, 1099, 1288, 1326, 1355, 1495 |
| Hin1I | GRCGYC | 4 cut(s) | 999, 1029, 1059, 1299 |
| Hin1II | CATG | 3 cut(s) | 444, 750, 1452 |
| HincII | GTYRAC | 4 cut(s) | 237, 292, 793, 895 |
| HindII | GTYRAC | 4 cut(s) | 237, 292, 793, 895 |
| HinfI | GANTC | 6 cut(s) | 604, 728, 878, 1149, 1225, 1242 |
| HpaI | GTTAAC | 1 cut(s) | 793 |
| HphI | GGTGA | 1 cut(s) | 965 |
| Hpy166II | GTNNAC | 7 cut(s) | 237, 292, 313, 793, 895, 917, 1234 |
| Hpy188I | TCNGA | 8 cut(s) | 134, 175, 183, 429, 541, 965, 1027, 1474 |
| Hpy188III | TCNNGA | 6 cut(s) | 45, 166, 509, 725, 1003, 1332 |
| Hpy8I | GTNNAC | 7 cut(s) | 237, 292, 313, 793, 895, 917, 1234 |
| HpyAV | CCTTC | 6 cut(s) | 24, 142, 340, 684, 1057, 1470 |
| HpyCH4III | ACNGT | 3 cut(s) | 215, 241, 547 |
| HpyCH4IV | ACGT | 5 cut(s) | 36, 900, 999, 1029, 1191 |
| HpyCH4V | TGCA | 6 cut(s) | 99, 313, 746, 839, 1222, 1448 |
| HpyF3I | CTNAG | 2 cut(s) | 757, 806 |
| HpySE526I | ACGT | 5 cut(s) | 36, 900, 999, 1029, 1191 |
| Hsp92I | GRCGYC | 4 cut(s) | 999, 1029, 1059, 1299 |
| Hsp92II | CATG | 3 cut(s) | 444, 750, 1452 |
| KroI | GCCGGC | 3 cut(s) | 336, 610, 1038 |
| KroNI | GCCGGC | 3 cut(s) | 338, 612, 1040 |
| KspAI | GTTAAC | 1 cut(s) | 793 |
| Kzo9I | GATC | 8 cut(s) | 175, 183, 536, 581, 831, 965, 1139, 1421 |
| LmnI | GCTCC | 9 cut(s) | 352, 709, 767, 936, 1075, 1087, 1334, 1475, 1494 |
| Lsp1109I | GCAGC | 3 cut(s) | 12, 212, 976 |
| LweI | GCATC | 3 cut(s) | 125, 559, 1187 |
| MaeI | CTAG | 3 cut(s) | 551, 819, 867 |
| MaeII | ACGT | 5 cut(s) | 36, 900, 999, 1029, 1191 |
| MaeIII | GTNAC | 4 cut(s) | 385, 592, 1300, 1540 |
| MalI | GATC | 8 cut(s) | 177, 185, 538, 583, 833, 967, 1141, 1423 |
| MbiI | CCGCTC | 3 cut(s) | 1082, 1477, 1496 |
| MboI | GATC | 8 cut(s) | 175, 183, 536, 581, 831, 965, 1139, 1421 |
| MboII | GAAGA | 5 cut(s) | 154, 406, 543, 842, 1198 |
| MfeI | CAATTG | 1 cut(s) | 840 |
| MhlI | GDGCHC | 8 cut(s) | 67, 315, 410, 529, 697, 1056, 1080, 1287 |
| MluCI | AATT | 7 cut(s) | 358, 398, 681, 784, 840, 861, 1217 |
| MluI | ACGCGT | 1 cut(s) | 204 |
| MlyI | GAGTC | 4 cut(s) | 598, 887, 1143, 1251 |
| MmeI | TCCRAC | 2 cut(s) | 254, 1050 |
| MroNI | GCCGGC | 3 cut(s) | 336, 610, 1038 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1021 |
| MseI | TTAA | 5 cut(s) | 357, 504, 675, 783, 792 |
| MslI | CAYNNNNRTG | 1 cut(s) | 439 |
| MspA1I | CMGCKG | 2 cut(s) | 225, 1548 |
| MunI | CAATTG | 1 cut(s) | 840 |
| MvaI | CCWGG | 5 cut(s) | 351, 578, 702, 1295, 1528 |
| NaeI | GCCGGC | 3 cut(s) | 338, 612, 1040 |
| NciI | CCSGG | 8 cut(s) | 74, 366, 646, 1072, 1073, 1086, 1087, 1395 |
| NdeII | GATC | 8 cut(s) | 175, 183, 536, 581, 831, 965, 1139, 1421 |
| NgoMIV | GCCGGC | 3 cut(s) | 336, 610, 1038 |
| NlaIII | CATG | 3 cut(s) | 444, 750, 1452 |
| NlaIV | GGNNCC | 8 cut(s) | 615, 643, 696, 711, 1037, 1077, 1127, 1398 |
| NmeAIII | GCCGAG | 6 cut(s) | 1035, 1133, 1148, 1304, 1381, 1533 |
| NmuCI | GTSAC | 1 cut(s) | 1300 |
| NspI | RCATGY | 1 cut(s) | 1452 |
| PcsI | WCGNNNNNNNCGW | 8 cut(s) | 203, 207, 935, 993, 1005, 1056, 1414, 1426 |
| PdiI | GCCGGC | 3 cut(s) | 338, 612, 1040 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1021 |
| PfeI | GAWTC | 2 cut(s) | 728, 1225 |
| Pfl23II | CGTACG | 1 cut(s) | 207 |
| PflFI | GACNNNGTC | 1 cut(s) | 899 |
| PfoI | TCCNGGA | 1 cut(s) | 72 |
| PinAI | ACCGGT | 2 cut(s) | 294, 315 |
| PkrI | GCNGC | 6 cut(s) | 27, 84, 227, 972, 991, 1479 |
| Ple19I | CGATCG | 3 cut(s) | 178, 186, 1424 |
| PleI | GAGTC | 4 cut(s) | 598, 886, 1143, 1250 |
| PpsI | GAGTC | 4 cut(s) | 598, 886, 1143, 1250 |
| PpuMI | RGGWCCY | 1 cut(s) | 1397 |
| PshBI | ATTAAT | 1 cut(s) | 504 |
| Psp1406I | AACGTT | 1 cut(s) | 36 |
| Psp5II | RGGWCCY | 1 cut(s) | 1397 |
| Psp6I | CCWGG | 5 cut(s) | 349, 576, 700, 1293, 1526 |
| PspEI | GGTNACC | 1 cut(s) | 1540 |
| PspGI | CCWGG | 5 cut(s) | 349, 576, 700, 1293, 1526 |
| PspLI | CGTACG | 1 cut(s) | 207 |
| PspN4I | GGNNCC | 8 cut(s) | 615, 643, 696, 711, 1037, 1077, 1127, 1398 |
| PspPI | GGNCC | 8 cut(s) | 107, 276, 297, 948, 1036, 1044, 1397, 1479 |
| PspPPI | RGGWCCY | 1 cut(s) | 1397 |
| PsyI | GACNNNGTC | 1 cut(s) | 899 |
| PvuI | CGATCG | 3 cut(s) | 178, 186, 1424 |
| RsaI | GTAC | 3 cut(s) | 209, 916, 1093 |
| RsaNI | GTAC | 3 cut(s) | 208, 915, 1092 |
| RseI | CAYNNNNRTG | 1 cut(s) | 439 |
| Rsr2I | CGGWCCG | 1 cut(s) | 297 |
| RsrII | CGGWCCG | 1 cut(s) | 297 |
| SalI | GTCGAC | 2 cut(s) | 235, 290 |
| SaqAI | TTAA | 5 cut(s) | 357, 504, 675, 783, 792 |
| SatI | GCNGC | 6 cut(s) | 26, 83, 226, 971, 990, 1478 |
| Sau3AI | GATC | 8 cut(s) | 175, 183, 536, 581, 831, 965, 1139, 1421 |
| Sau96I | GGNCC | 8 cut(s) | 107, 276, 297, 948, 1036, 1044, 1397, 1479 |
| SchI | GAGTC | 4 cut(s) | 598, 887, 1143, 1251 |
| SduI | GDGCHC | 8 cut(s) | 67, 315, 410, 529, 697, 1056, 1080, 1287 |
| SfaNI | GCATC | 3 cut(s) | 125, 559, 1187 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1104 |
| SinI | GGWCC | 5 cut(s) | 107, 276, 297, 948, 1397 |
| SmaI | CCCGGG | 2 cut(s) | 1073, 1087 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 439 |
| Sse9I | AATT | 7 cut(s) | 358, 398, 681, 784, 840, 861, 1217 |
| SspMI | CTAG | 3 cut(s) | 551, 819, 867 |
| StyI | CCWWGG | 3 cut(s) | 279, 489, 1121 |
| TaaI | ACNGT | 3 cut(s) | 215, 241, 547 |
| TaiI | ACGT | 5 cut(s) | 39, 903, 1002, 1032, 1194 |
| TaqII | GACCGA | 1 cut(s) | 95 |
| TasI | AATT | 7 cut(s) | 358, 398, 681, 784, 840, 861, 1217 |
| TatI | WGTACW | 1 cut(s) | 914 |
| TauI | GCSGC | 3 cut(s) | 85, 973, 1480 |
| TfiI | GAWTC | 2 cut(s) | 728, 1225 |
| Tru1I | TTAA | 5 cut(s) | 357, 504, 675, 783, 792 |
| Tru9I | TTAA | 5 cut(s) | 357, 504, 675, 783, 792 |
| TseFI | GTSAC | 1 cut(s) | 1300 |
| TseI | GCWGC | 3 cut(s) | 25, 225, 989 |
| Tsp45I | GTSAC | 1 cut(s) | 1300 |
| TspDTI | ATGAA | 2 cut(s) | 490, 1199 |
| TspGWI | ACGGA | 5 cut(s) | 109, 242, 702, 778, 1175 |
| TspMI | CCCGGG | 2 cut(s) | 1071, 1085 |
| Tth111I | GACNNNGTC | 1 cut(s) | 899 |
| VneI | GTGCAC | 1 cut(s) | 311 |
| VpaK11BI | GGWCC | 5 cut(s) | 107, 276, 297, 948, 1397 |
| VspI | ATTAAT | 1 cut(s) | 504 |
| XapI | RAATTY | 1 cut(s) | 861 |
| XceI | RCATGY | 1 cut(s) | 1452 |
| XmaI | CCCGGG | 2 cut(s) | 1071, 1085 |
| XmiI | GTMKAC | 2 cut(s) | 236, 291 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1021 |
| XspI | CTAG | 3 cut(s) | 551, 819, 867 |
| ZraI | GACGTC | 2 cut(s) | 1000, 1030 |