Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00002246

Orthogroup ID

OG0002208

Physical Location & Seq

Genomic Coordinates Forward (+)

47026 .. 47789

Gene Structure 764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom2246g00180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGAGTGGTAATTGGGTTGTATTCGACGGCAGGCTCCGTGCTTCGGCATCGAACTGTCGGCTCGTACCCCGCTTCATCGACGCGTCGAGATTTGTCTCGTGCGCAGGATGGGTTTCTGTTTTGGCTACCTGCTGCGAAGGAACGTTGCCTCTCGTCGTCCCTTTCCTCCTCTTGCTGGCCTCGCCGGCGGGAGGACGACATCGTGGCGGTGCTCGTGTCCCGGACGAGCCGCACTCGTTGCGGAAGCTGAAGGGGCGGTGGGTCTTCACGACCTCCGATCGTCCGATCGAAGCCTTGTCGCTCGACGCGTACGACCGTCGCGCCCGCTGCGAGCCGTCGACCGTCAAGGTCGTCCGTCTCGCGCGACGCCGACGTCGGGAGGAATGCTACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTATGAACAAATTCAGACTGTGAAACTCTGCTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCAACAAACCCCGACTTCTGGAAGGGACGCATTTATTAGATAAAAGGTCGACGCGGGCTCTGCCCGTTGCTCTGATGATTCATGATAACTCGACGGATCGCACAGCCATCGTGCTGGCGACGCATCATTCAAATATCTGCCCTATCAACTTTCGATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

226

Amino Acids

25.34

Weight (kDa)

9.93

Isoelectric Point (pI)

57.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01021
pyrus_communis	pycom10g22490 pycom12554g00020 pycom12554g00070 pycom12555g00010 pycom12555g00110 pycom12555g00120 pycom12555g00200 pycom12597g00030 pycom12597g00040 pycom12597g00050 pycom2132g00040 pycom2132g00050 pycom2158g00030 pycom2158g00040 pycom2246g00010 pycom2246g00020 pycom2246g00030 pycom2246g00040 pycom2246g00090 pycom2246g00180 pycom2246g00200 pycom2247g00030 pycom2247g00060 pycom2303g00020 pycom2303g00060 pycom2303g00100 pycom2303g00130 pycom2303g00160 pycom2575g00010 pycom2575g00050 pycom280g00090 pycom280g00100 pycom280g00120 pycom420g00340 pycom520g01340 pycom553g00010 pycom553g00020 pycom581g00110 pycom961g00010
rosa_roxburghii	Rroxscaffold_118G00451770 Rroxscaffold_31G00438260 Rroxscaffold_6G00387770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	372
AatII	GACGTC	1 cut(s)	376
Acc16I	TGCGCA	1 cut(s)	103
Acc36I	ACCTGC	1 cut(s)	137
AccI	GTMKAC	2 cut(s)	338, 566
AccII	CGCG	6 cut(s)	83, 308, 321, 362, 364, 571
AciI	CCGC	8 cut(s)	70, 188, 207, 230, 241, 256, 325, 571
AclI	AACGTT	1 cut(s)	143
AclWI	GGATC	2 cut(s)	392, 621
AcsI	RAATTY	1 cut(s)	459
AcuI	CTGAAG	1 cut(s)	269
AcyI	GRCGYC	2 cut(s)	367, 373
AfaI	GTAC	2 cut(s)	66, 311
AfiI	CCNNNNNNNGG	5 cut(s)	43, 175, 191, 376, 535
AflIII	ACRYGT	2 cut(s)	81, 306
AgsI	TTSAA	1 cut(s)	648
AjnI	CCWGG	1 cut(s)	390
AluBI	AGCT	2 cut(s)	247, 509
AluI	AGCT	2 cut(s)	247, 509
Alw21I	GWGCWC	1 cut(s)	214
Alw26I	GTCTC	3 cut(s)	100, 362, 427
AlwI	GGATC	2 cut(s)	392, 621
AoxI	GGCC	1 cut(s)	177
ApeKI	GCWGC	2 cut(s)	132, 327
ApoI	RAATTY	1 cut(s)	459
Asp700I	GAANNNNTTC	1 cut(s)	459
AspLEI	GCGC	3 cut(s)	104, 323, 364
AsuC2I	CCSGG	1 cut(s)	221
BanII	GRGCYC	1 cut(s)	577
BauI	CACGAG	2 cut(s)	97, 213
BbsI	GAAGAC	1 cut(s)	256
Bbv12I	GWGCWC	1 cut(s)	214
BbvI	GCAGC	2 cut(s)	119, 314
BccI	CCATC	3 cut(s)	102, 632, 666
BceAI	ACGGC	2 cut(s)	43, 319
BcgI	CGANNNNNNTGC	2 cut(s)	607, 641
BciT130I	CCWGG	1 cut(s)	392
BcnI	CCSGG	1 cut(s)	221
BcoDI	GTCTC	3 cut(s)	100, 362, 427
BfaI	CTAG	1 cut(s)	504
BfuAI	ACCTGC	1 cut(s)	137
BglI	GCCNNNNNGGC	1 cut(s)	185
BisI	GCNGC	3 cut(s)	133, 230, 328
BlsI	GCNGC	3 cut(s)	134, 231, 329
Bme1390I	CCNGG	2 cut(s)	221, 392
BmiI	GGNNCC	1 cut(s)	35
BmrFI	CCNGG	2 cut(s)	221, 392
BmsI	GCATC	2 cut(s)	56, 649
BpiI	GAAGAC	1 cut(s)	256
BplI	GAGNNNNNCTC	2 cut(s)	218, 250
BpuMI	CCSGG	1 cut(s)	221
BsaAI	YACGTR	1 cut(s)	516
BsaHI	GRCGYC	2 cut(s)	367, 373
Bsc4I	CCNNNNNNNGG	5 cut(s)	43, 175, 191, 376, 535
Bse118I	RCCGGY	1 cut(s)	184
Bse1I	ACTGG	1 cut(s)	405
BseBI	CCWGG	1 cut(s)	392
BseGI	GGATG	1 cut(s)	113
BseLI	CCNNNNNNNGG	5 cut(s)	43, 175, 191, 376, 535
BseNI	ACTGG	1 cut(s)	405
BseRI	GAGGAG	1 cut(s)	158
BseXI	GCAGC	2 cut(s)	119, 314
Bsh1236I	CGCG	6 cut(s)	83, 308, 321, 362, 364, 571
Bsh1285I	CGRYCG	4 cut(s)	280, 288, 316, 342
BshFI	GGCC	1 cut(s)	179
BsiEI	CGRYCG	4 cut(s)	280, 288, 316, 342
BsiHKAI	GWGCWC	1 cut(s)	214
BsiSI	CCGG	2 cut(s)	185, 221
BsiWI	CGTACG	1 cut(s)	309
BslFI	GGGAC	3 cut(s)	143, 203, 556
BslI	CCNNNNNNNGG	5 cut(s)	43, 175, 191, 376, 535
BsmAI	GTCTC	3 cut(s)	100, 362, 427
BsmBI	CGTCTC	1 cut(s)	362
BsmFI	GGGAC	3 cut(s)	143, 203, 556
BsmI	GAATGC	1 cut(s)	389
BsnI	GGCC	1 cut(s)	179
Bsp1286I	GDGCHC	2 cut(s)	214, 577
Bsp143I	GATC	4 cut(s)	277, 285, 397, 613
BspACI	CCGC	8 cut(s)	70, 188, 207, 230, 241, 256, 325, 571
BspANI	GGCC	1 cut(s)	179
BspFNI	CGCG	6 cut(s)	83, 308, 321, 362, 364, 571
BspHI	TCATGA	1 cut(s)	598
BspLI	GGNNCC	1 cut(s)	35
BspMI	ACCTGC	1 cut(s)	137
BspPI	GGATC	2 cut(s)	392, 621
BsrFI	RCCGGY	1 cut(s)	184
BsrI	ACTGG	1 cut(s)	405
BssAI	RCCGGY	1 cut(s)	184
BssMI	GATC	4 cut(s)	277, 285, 397, 613
BssNI	GRCGYC	2 cut(s)	367, 373
BssSI	CACGAG	2 cut(s)	97, 213
Bst2BI	CACGAG	2 cut(s)	97, 213
Bst2UI	CCWGG	1 cut(s)	392
Bst4CI	ACNGT	5 cut(s)	56, 317, 343, 469, 494
BstACI	GRCGYC	2 cut(s)	367, 373
BstAPI	GCANNNNNTGC	1 cut(s)	238
BstBAI	YACGTR	1 cut(s)	516
BstC8I	GCNNGC	7 cut(s)	32, 177, 186, 325, 332, 573, 633
BstF5I	GGATG	1 cut(s)	113
BstFNI	CGCG	6 cut(s)	83, 308, 321, 362, 364, 571
BstHHI	GCGC	3 cut(s)	104, 323, 364
BstKTI	GATC	4 cut(s)	280, 288, 400, 616
BstMAI	GTCTC	3 cut(s)	100, 362, 427
BstMBI	GATC	4 cut(s)	277, 285, 397, 613
BstMCI	CGRYCG	4 cut(s)	280, 288, 316, 342
BstMWI	GCNNNNNNNGC	7 cut(s)	181, 185, 238, 253, 327, 577, 637
BstNI	CCWGG	1 cut(s)	392
BstNSI	RCATGY	1 cut(s)	445
BstSCI	CCNGG	2 cut(s)	219, 390
BstUI	CGCG	6 cut(s)	83, 308, 321, 362, 364, 571
BstV1I	GCAGC	2 cut(s)	119, 314
BstV2I	GAAGAC	1 cut(s)	256
BstXI	CCANNNNNNTGG	1 cut(s)	631
BsuRI	GGCC	1 cut(s)	179
BtsCI	GGATG	1 cut(s)	113
BveI	ACCTGC	1 cut(s)	137
Cac8I	GCNNGC	7 cut(s)	32, 177, 186, 325, 332, 573, 633
CciI	TCATGA	1 cut(s)	598
CfoI	GCGC	3 cut(s)	104, 323, 364
Cfr10I	RCCGGY	1 cut(s)	184
CseI	GACGC	7 cut(s)	72, 89, 314, 375, 553, 577, 646
CsiI	ACCWGGT	1 cut(s)	390
Csp6I	GTAC	2 cut(s)	65, 310
CviAII	CATG	3 cut(s)	438, 442, 599
CviQI	GTAC	2 cut(s)	65, 310
DpnI	GATC	4 cut(s)	279, 287, 399, 615
DpnII	GATC	4 cut(s)	277, 285, 397, 613
DrdI	GACNNNNNNGTC	1 cut(s)	372
DseDI	GACNNNNNNGTC	1 cut(s)	372
Eco24I	GRGCYC	1 cut(s)	577
Eco57I	CTGAAG	1 cut(s)	269
EcoRII	CCWGG	1 cut(s)	390
EcoT22I	ATGCAT	1 cut(s)	443
EcoT38I	GRGCYC	1 cut(s)	577
Esp3I	CGTCTC	1 cut(s)	362
FaeI	CATG	3 cut(s)	441, 445, 602
FaiI	YATR	6 cut(s)	414, 416, 439, 443, 453, 600
FaqI	GGGAC	3 cut(s)	143, 203, 556
FatI	CATG	3 cut(s)	437, 441, 598
FauI	CCCGC	4 cut(s)	77, 181, 332, 564
FauNDI	CATATG	1 cut(s)	414
FblI	GTMKAC	2 cut(s)	338, 566
Fnu4HI	GCNGC	3 cut(s)	133, 230, 328
FokI	GGATG	1 cut(s)	120
FriOI	GRGCYC	1 cut(s)	577
Fsp4HI	GCNGC	3 cut(s)	133, 230, 328
FspBI	CTAG	1 cut(s)	504
FspI	TGCGCA	1 cut(s)	103
GlaI	GCGC	3 cut(s)	103, 322, 363
GluI	GCNGC	3 cut(s)	133, 230, 328
HaeIII	GGCC	1 cut(s)	179
HapII	CCGG	2 cut(s)	185, 221
HgaI	GACGC	7 cut(s)	72, 89, 314, 375, 553, 577, 646
HhaI	GCGC	3 cut(s)	104, 323, 364
Hin1I	GRCGYC	2 cut(s)	367, 373
Hin1II	CATG	3 cut(s)	441, 445, 602
Hin6I	GCGC	3 cut(s)	102, 321, 362
HinP1I	GCGC	3 cut(s)	102, 321, 362
HincII	GTYRAC	2 cut(s)	339, 567
HindII	GTYRAC	2 cut(s)	339, 567
HinfI	GANTC	1 cut(s)	595
HpaII	CCGG	2 cut(s)	185, 221
Hpy166II	GTNNAC	2 cut(s)	339, 567
Hpy188I	TCNGA	5 cut(s)	277, 285, 465, 487, 591
Hpy188III	TCNNGA	6 cut(s)	87, 268, 377, 504, 536, 599
Hpy8I	GTNNAC	2 cut(s)	339, 567
HpyAV	CCTTC	3 cut(s)	131, 244, 533
HpyCH4III	ACNGT	5 cut(s)	56, 317, 343, 469, 494
HpyCH4IV	ACGT	3 cut(s)	143, 373, 515
HpyCH4V	TGCA	2 cut(s)	441, 519
HpyF10VI	GCNNNNNNNGC	7 cut(s)	181, 185, 238, 253, 327, 577, 637
HpySE526I	ACGT	3 cut(s)	143, 373, 515
Hsp92I	GRCGYC	2 cut(s)	367, 373
Hsp92II	CATG	3 cut(s)	441, 445, 602
HspAI	GCGC	3 cut(s)	102, 321, 362
KroI	GCCGGC	1 cut(s)	184
KroNI	GCCGGC	1 cut(s)	186
Kzo9I	GATC	4 cut(s)	277, 285, 397, 613
LmnI	GCTCC	1 cut(s)	39
Lsp1109I	GCAGC	2 cut(s)	119, 314
LweI	GCATC	2 cut(s)	56, 649
MabI	ACCWGGT	1 cut(s)	390
MaeI	CTAG	1 cut(s)	504
MaeII	ACGT	3 cut(s)	143, 373, 515
MalI	GATC	4 cut(s)	279, 287, 399, 615
MboI	GATC	4 cut(s)	277, 285, 397, 613
MboII	GAAGA	1 cut(s)	256
MhlI	GDGCHC	2 cut(s)	214, 577
MluCI	AATT	3 cut(s)	10, 459, 499
MluI	ACGCGT	2 cut(s)	81, 306
MnlI	CCTC	7 cut(s)	159, 176, 179, 185, 190, 283, 373
Mph1103I	ATGCAT	1 cut(s)	443
MreI	CGCCGGCG	1 cut(s)	184
MroNI	GCCGGC	1 cut(s)	184
MroXI	GAANNNNTTC	1 cut(s)	459
MseI	TTAA	1 cut(s)	432
MslI	CAYNNNNRTG	1 cut(s)	442
MspA1I	CMGCKG	1 cut(s)	327
MspI	CCGG	2 cut(s)	185, 221
MspR9I	CCNGG	2 cut(s)	221, 392
Mva1269I	GAATGC	1 cut(s)	389
MvaI	CCWGG	1 cut(s)	392
MvnI	CGCG	6 cut(s)	83, 308, 321, 362, 364, 571
MwoI	GCNNNNNNNGC	7 cut(s)	181, 185, 238, 253, 327, 577, 637
NaeI	GCCGGC	1 cut(s)	186
NciI	CCSGG	1 cut(s)	221
NdeI	CATATG	1 cut(s)	414
NdeII	GATC	4 cut(s)	277, 285, 397, 613
NgoMIV	GCCGGC	1 cut(s)	184
NlaIII	CATG	3 cut(s)	441, 445, 602
NlaIV	GGNNCC	1 cut(s)	35
NsbI	TGCGCA	1 cut(s)	103
NsiI	ATGCAT	1 cut(s)	443
NspI	RCATGY	1 cut(s)	445
PagI	TCATGA	1 cut(s)	598
PcsI	WCGNNNNNNNCGW	2 cut(s)	305, 309
PctI	GAATGC	1 cut(s)	389
PdiI	GCCGGC	1 cut(s)	186
PdmI	GAANNNNTTC	1 cut(s)	459
PfeI	GAWTC	1 cut(s)	595
Pfl23II	CGTACG	1 cut(s)	309
PfoI	TCCNGGA	1 cut(s)	219
PkrI	GCNGC	3 cut(s)	134, 231, 329
Ple19I	CGATCG	2 cut(s)	280, 288
Ppu21I	YACGTR	1 cut(s)	516
Psp1406I	AACGTT	1 cut(s)	143
Psp6I	CCWGG	1 cut(s)	390
PspGI	CCWGG	1 cut(s)	390
PspLI	CGTACG	1 cut(s)	309
PspN4I	GGNNCC	1 cut(s)	35
PvuI	CGATCG	2 cut(s)	280, 288
RsaI	GTAC	2 cut(s)	66, 311
RsaNI	GTAC	2 cut(s)	65, 310
RseI	CAYNNNNRTG	1 cut(s)	442
SalI	GTCGAC	2 cut(s)	337, 565
SaqAI	TTAA	1 cut(s)	432
SatI	GCNGC	3 cut(s)	133, 230, 328
Sau3AI	GATC	4 cut(s)	277, 285, 397, 613
ScrFI	CCNGG	2 cut(s)	221, 392
SduI	GDGCHC	2 cut(s)	214, 577
SexAI	ACCWGGT	1 cut(s)	390
SfaNI	GCATC	2 cut(s)	56, 649
SgrAI	CRCCGGYG	1 cut(s)	184
SmiMI	CAYNNNNRTG	1 cut(s)	442
Sse9I	AATT	3 cut(s)	10, 459, 499
SsiI	CCGC	8 cut(s)	70, 188, 207, 230, 241, 256, 325, 571
SspMI	CTAG	1 cut(s)	504
StyD4I	CCNGG	2 cut(s)	219, 390
TaaI	ACNGT	5 cut(s)	56, 317, 343, 469, 494
TaiI	ACGT	3 cut(s)	146, 376, 518
TasI	AATT	3 cut(s)	10, 459, 499
TauI	GCSGC	1 cut(s)	232
TfiI	GAWTC	1 cut(s)	595
Tru1I	TTAA	1 cut(s)	432
Tru9I	TTAA	1 cut(s)	432
TseI	GCWGC	2 cut(s)	132, 327
TspDTI	ATGAA	3 cut(s)	64, 468, 587
TspGWI	ACGGA	3 cut(s)	26, 344, 626
XapI	RAATTY	1 cut(s)	459
XbaI	TCTAGA	1 cut(s)	503
XceI	RCATGY	1 cut(s)	445
XmiI	GTMKAC	2 cut(s)	338, 566
XmnI	GAANNNNTTC	1 cut(s)	459
XspI	CTAG	1 cut(s)	504
ZraI	GACGTC	1 cut(s)	374
Zsp2I	ATGCAT	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.