Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002208

Physical Location & Seq

Genomic Coordinates Forward (+)

34903 .. 35745

Gene Structure 843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00387770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGTGGTGACGGGTGACGGAGAATTAGGGTTCGATTCCGGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCTGACACGGGGGAGGTAGTGACAATAAATAACAATACCGGGCTCTATGAGTCTGGTAATTGGAATGAGTACAATCTAAATCCCTTAACGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTGGGGGCTCGAAGACGATCAGATACCGTCCTAGTCTCAACCATAAACGATGCCGACCAGGGATCGGCGGATGTTACTTTTAGGACTCCGCCGGCACCTTATGAGAAATCAAAGTTTTTGGGTTCCGGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

170

Amino Acids

18.27

Weight (kDa)

9.84

Isoelectric Point (pI)

30.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01021
pyrus_communis	pycom10g22490 pycom12554g00020 pycom12554g00070 pycom12555g00010 pycom12555g00110 pycom12555g00120 pycom12555g00200 pycom12597g00030 pycom12597g00040 pycom12597g00050 pycom2132g00040 pycom2132g00050 pycom2158g00030 pycom2158g00040 pycom2246g00010 pycom2246g00020 pycom2246g00030 pycom2246g00040 pycom2246g00090 pycom2246g00180 pycom2246g00200 pycom2247g00030 pycom2247g00060 pycom2303g00020 pycom2303g00060 pycom2303g00100 pycom2303g00130 pycom2303g00160 pycom2575g00010 pycom2575g00050 pycom280g00090 pycom280g00100 pycom280g00120 pycom420g00340 pycom520g01340 pycom553g00010 pycom553g00020 pycom581g00110 pycom961g00010
rosa_roxburghii	Rroxscaffold_118G00451770 Rroxscaffold_31G00438260 Rroxscaffold_6G00387770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	220, 403, 484
AccII	CGCG	2 cut(s)	91, 233
AciI	CCGC	5 cut(s)	231, 233, 377, 398, 506
AclWI	GGATC	3 cut(s)	193, 206, 379
AfaI	GTAC	1 cut(s)	176
AfiI	CCNNNNNNNGG	5 cut(s)	45, 113, 195, 208, 373
AjnI	CCWGG	2 cut(s)	366, 490
AjuI	GAANNNNNNNTTGG	2 cut(s)	272, 304
AluBI	AGCT	1 cut(s)	245
AluI	AGCT	1 cut(s)	245
Alw26I	GTCTC	1 cut(s)	349
AlwI	GGATC	3 cut(s)	193, 206, 379
ApeKI	GCWGC	2 cut(s)	82, 227
AseI	ATTAAT	1 cut(s)	294
AspLEI	GCGC	2 cut(s)	91, 93
AsuC2I	CCSGG	3 cut(s)	40, 145, 436
AsuHPI	GGTGA	2 cut(s)	19, 26
BaeGI	GKGCMC	1 cut(s)	487
BamHI	GGATCC	1 cut(s)	198
BanI	GGYRCC	3 cut(s)	220, 403, 484
BanII	GRGCYC	2 cut(s)	150, 319
BbsI	GAAGAC	1 cut(s)	328
BbvI	GCAGC	2 cut(s)	94, 239
BceAI	ACGGC	1 cut(s)	76
BciT130I	CCWGG	2 cut(s)	368, 492
BcnI	CCSGG	3 cut(s)	40, 145, 436
BcoDI	GTCTC	1 cut(s)	349
BfaI	CTAG	1 cut(s)	341
BisI	GCNGC	4 cut(s)	83, 228, 231, 507
BlsI	GCNGC	4 cut(s)	84, 229, 232, 508
Bme1390I	CCNGG	5 cut(s)	40, 145, 368, 436, 492
BmiI	GGNNCC	7 cut(s)	50, 200, 222, 405, 433, 486, 501
BmrFI	CCNGG	5 cut(s)	40, 145, 368, 436, 492
BmsI	GCATC	1 cut(s)	349
BpiI	GAAGAC	1 cut(s)	328
BpuMI	CCSGG	3 cut(s)	40, 145, 436
BsaJI	CCNNGG	5 cut(s)	73, 231, 279, 367, 435
BsaXI	ACNNNNNCTCC	2 cut(s)	199, 229
Bsc4I	CCNNNNNNNGG	5 cut(s)	45, 113, 195, 208, 373
Bse118I	RCCGGY	1 cut(s)	400
BseBI	CCWGG	2 cut(s)	368, 492
BseDI	CCNNGG	5 cut(s)	73, 231, 279, 367, 435
BseGI	GGATG	3 cut(s)	69, 289, 385
BseLI	CCNNNNNNNGG	5 cut(s)	45, 113, 195, 208, 373
BseMII	CTCAG	1 cut(s)	44
BsePI	GCGCGC	1 cut(s)	89
BseSI	GKGCMC	1 cut(s)	487
BseXI	GCAGC	2 cut(s)	94, 239
Bsh1236I	CGCG	2 cut(s)	91, 233
BshNI	GGYRCC	3 cut(s)	220, 403, 484
BsiSI	CCGG	4 cut(s)	39, 144, 401, 435
BslI	CCNNNNNNNGG	5 cut(s)	45, 113, 195, 208, 373
BsmAI	GTCTC	1 cut(s)	349
Bsp1286I	GDGCHC	3 cut(s)	150, 319, 487
Bsp143I	GATC	3 cut(s)	198, 326, 371
BspACI	CCGC	5 cut(s)	231, 233, 377, 398, 506
BspCNI	CTCAG	1 cut(s)	45
BspFNI	CGCG	2 cut(s)	91, 233
BspLI	GGNNCC	7 cut(s)	50, 200, 222, 405, 433, 486, 501
BspPI	GGATC	3 cut(s)	193, 206, 379
BspT107I	GGYRCC	3 cut(s)	220, 403, 484
BsrFI	RCCGGY	1 cut(s)	400
BssAI	RCCGGY	1 cut(s)	400
BssECI	CCNNGG	5 cut(s)	73, 231, 279, 367, 435
BssHII	GCGCGC	1 cut(s)	89
BssMI	GATC	3 cut(s)	198, 326, 371
BssT1I	CCWWGG	2 cut(s)	73, 279
Bst2UI	CCWGG	2 cut(s)	368, 492
Bst4CI	ACNGT	1 cut(s)	337
BstC8I	GCNNGC	5 cut(s)	87, 91, 225, 402, 504
BstDEI	CTNAG	1 cut(s)	53
BstDSI	CCRYGG	1 cut(s)	231
BstENI	CCTNNNNNAGG	1 cut(s)	193
BstF5I	GGATG	3 cut(s)	69, 289, 385
BstFNI	CGCG	2 cut(s)	91, 233
BstHHI	GCGC	2 cut(s)	91, 93
BstKTI	GATC	3 cut(s)	201, 329, 374
BstMAI	GTCTC	1 cut(s)	349
BstMBI	GATC	3 cut(s)	198, 326, 371
BstMWI	GCNNNNNNNGC	2 cut(s)	88, 251
BstNI	CCWGG	2 cut(s)	368, 492
BstSCI	CCNGG	5 cut(s)	38, 143, 366, 434, 490
BstSLI	GKGCMC	1 cut(s)	487
BstUI	CGCG	2 cut(s)	91, 233
BstV1I	GCAGC	2 cut(s)	94, 239
BstV2I	GAAGAC	1 cut(s)	328
BstX2I	RGATCY	1 cut(s)	198
BstYI	RGATCY	1 cut(s)	198
BtgI	CCRYGG	1 cut(s)	231
BtsCI	GGATG	3 cut(s)	69, 289, 385
Cac8I	GCNNGC	5 cut(s)	87, 91, 225, 402, 504
CfoI	GCGC	2 cut(s)	91, 93
Cfr10I	RCCGGY	1 cut(s)	400
Cfr42I	CCGCGG	1 cut(s)	234
Csp6I	GTAC	1 cut(s)	175
CviJI	RGCY	9 cut(s)	51, 63, 148, 230, 245, 317, 457, 502, 509
CviKI_1	RGCY	9 cut(s)	51, 63, 148, 230, 245, 317, 457, 502, 509
CviQI	GTAC	1 cut(s)	175
DdeI	CTNAG	1 cut(s)	53
DpnI	GATC	3 cut(s)	200, 328, 373
DpnII	GATC	3 cut(s)	198, 326, 371
EciI	GGCGGA	2 cut(s)	387, 392
Eco130I	CCWWGG	2 cut(s)	73, 279
Eco24I	GRGCYC	2 cut(s)	150, 319
EcoNI	CCTNNNNNAGG	1 cut(s)	193
EcoRII	CCWGG	2 cut(s)	366, 490
EcoT14I	CCWWGG	2 cut(s)	73, 279
EcoT38I	GRGCYC	2 cut(s)	150, 319
ErhI	CCWWGG	2 cut(s)	73, 279
FaiI	YATR	4 cut(s)	153, 353, 411, 446
Fnu4HI	GCNGC	4 cut(s)	83, 228, 231, 507
FokI	GGATG	3 cut(s)	56, 296, 392
FriOI	GRGCYC	2 cut(s)	150, 319
Fsp4HI	GCNGC	4 cut(s)	83, 228, 231, 507
FspBI	CTAG	1 cut(s)	341
GlaI	GCGC	2 cut(s)	90, 92
GluI	GCNGC	4 cut(s)	83, 228, 231, 507
HapII	CCGG	4 cut(s)	39, 144, 401, 435
HhaI	GCGC	2 cut(s)	91, 93
Hin6I	GCGC	2 cut(s)	89, 91
HinP1I	GCGC	2 cut(s)	89, 91
HinfI	GANTC	3 cut(s)	35, 155, 394
HpaII	CCGG	4 cut(s)	39, 144, 401, 435
HphI	GGTGA	2 cut(s)	19, 26
Hpy188I	TCNGA	1 cut(s)	331
Hpy188III	TCNNGA	2 cut(s)	107, 299
HpyAV	CCTTC	2 cut(s)	72, 474
HpyCH4III	ACNGT	1 cut(s)	337
HpyF10VI	GCNNNNNNNGC	2 cut(s)	88, 251
HpyF3I	CTNAG	1 cut(s)	53
HspAI	GCGC	2 cut(s)	89, 91
KroI	GCCGGC	1 cut(s)	400
KroNI	GCCGGC	1 cut(s)	402
KspI	CCGCGG	1 cut(s)	234
Kzo9I	GATC	3 cut(s)	198, 326, 371
LmnI	GCTCC	3 cut(s)	48, 250, 499
Lsp1109I	GCAGC	2 cut(s)	94, 239
LweI	GCATC	1 cut(s)	349
MaeI	CTAG	1 cut(s)	341
MaeIII	GTNAC	4 cut(s)	7, 14, 124, 382
MalI	GATC	3 cut(s)	200, 328, 373
MboI	GATC	3 cut(s)	198, 326, 371
MboII	GAAGA	1 cut(s)	333
MflI	RGATCY	1 cut(s)	198
MhlI	GDGCHC	3 cut(s)	150, 319, 487
MluCI	AATT	5 cut(s)	23, 95, 163, 237, 471
MlyI	GAGTC	2 cut(s)	164, 388
MnlI	CCTC	4 cut(s)	38, 112, 189, 201
MroNI	GCCGGC	1 cut(s)	400
MseI	TTAA	4 cut(s)	191, 294, 465, 511
MspA1I	CMGCKG	1 cut(s)	233
MspI	CCGG	4 cut(s)	39, 144, 401, 435
MspR9I	CCNGG	5 cut(s)	40, 145, 368, 436, 492
MvaI	CCWGG	2 cut(s)	368, 492
MvnI	CGCG	2 cut(s)	91, 233
MwoI	GCNNNNNNNGC	2 cut(s)	88, 251
NaeI	GCCGGC	1 cut(s)	402
NciI	CCSGG	3 cut(s)	40, 145, 436
NdeII	GATC	3 cut(s)	198, 326, 371
NgoMIV	GCCGGC	1 cut(s)	400
NlaIV	GGNNCC	7 cut(s)	50, 200, 222, 405, 433, 486, 501
NmuCI	GTSAC	3 cut(s)	7, 14, 124
PauI	GCGCGC	1 cut(s)	89
PdiI	GCCGGC	1 cut(s)	402
PfeI	GAWTC	1 cut(s)	35
PfoI	TCCNGGA	1 cut(s)	38
PkrI	GCNGC	4 cut(s)	84, 229, 232, 508
PleI	GAGTC	2 cut(s)	163, 388
PpsI	GAGTC	2 cut(s)	163, 388
PshBI	ATTAAT	1 cut(s)	294
Psp6I	CCWGG	2 cut(s)	366, 490
PspGI	CCWGG	2 cut(s)	366, 490
PspN4I	GGNNCC	7 cut(s)	50, 200, 222, 405, 433, 486, 501
PsuI	RGATCY	1 cut(s)	198
PteI	GCGCGC	1 cut(s)	89
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
SacII	CCGCGG	1 cut(s)	234
SaqAI	TTAA	4 cut(s)	191, 294, 465, 511
SatI	GCNGC	4 cut(s)	83, 228, 231, 507
Sau3AI	GATC	3 cut(s)	198, 326, 371
SchI	GAGTC	2 cut(s)	164, 388
ScrFI	CCNGG	5 cut(s)	40, 145, 368, 436, 492
SduI	GDGCHC	3 cut(s)	150, 319, 487
SetI	ASST	3 cut(s)	123, 247, 409
SfaNI	GCATC	1 cut(s)	349
Sfr303I	CCGCGG	1 cut(s)	234
SgrBI	CCGCGG	1 cut(s)	234
Sse9I	AATT	5 cut(s)	23, 95, 163, 237, 471
SsiI	CCGC	5 cut(s)	231, 233, 377, 398, 506
SspMI	CTAG	1 cut(s)	341
StyD4I	CCNGG	5 cut(s)	38, 143, 366, 434, 490
StyI	CCWWGG	2 cut(s)	73, 279
TaaI	ACNGT	1 cut(s)	337
TaqI	TCGA	2 cut(s)	33, 319
TasI	AATT	5 cut(s)	23, 95, 163, 237, 471
TatI	WGTACW	1 cut(s)	174
TauI	GCSGC	2 cut(s)	233, 509
TfiI	GAWTC	1 cut(s)	35
Tru1I	TTAA	4 cut(s)	191, 294, 465, 511
Tru9I	TTAA	4 cut(s)	191, 294, 465, 511
TseFI	GTSAC	3 cut(s)	7, 14, 124
TseI	GCWGC	2 cut(s)	82, 227
Tsp45I	GTSAC	3 cut(s)	7, 14, 124
TspDTI	ATGAA	1 cut(s)	280
TspGWI	ACGGA	2 cut(s)	33, 492
VspI	ATTAAT	1 cut(s)	294
XagI	CCTNNNNNAGG	1 cut(s)	193
XspI	CTAG	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.