AT3G06110

dual specificity protein phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000627
Physical Location & Seq
Forward (+)
1843413 .. 1845062
1650 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G06110.2

Sequence Viewer

Length: 474 bp
ATGGAGAAAGTGGTTGATCTCTTCGGAGTCGGAGAAGCTAATTCCCAGAAGCTACTCGAAGGAGGCAAAGATCTCAGCGAGATCCAACAGGGATTGTTCATAGGATCAGTAGCTGAAGCGAATAACAAGGATTTTCTCAAAAGCTCTAATATCACTCATGTCTTAACCGTTGCTGTGGCCTTGGCTCCTCCTTATCCTGATGATTTTGTCTACAAAGTCATTGAAGTATATTTCGATGAGTGTTATAGCTTCATCGACCAAGCTATTCAATCTGGTGGTGGTGTTTTGGTTCATTGCTTCATGGGAATGTCTAGGAGTGTGACTATAGTGGTGGCTTACCTGATGAAAAAGCATGGAATGGGATTCTCTAAAGCTATGGAACTTGTAAGGAGCCGACGACATCAGGCATATCCTAATCCCGGTTTCATTTCGCAGCTCCAGCAATTTGAAAAATCCATCCAAGGTAATGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000188 GO:0000302 GO:0001101 GO:0001932 GO:0001933 GO:0002682 GO:0002683 GO:0003674 GO:0003824 GO:0004721 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006469 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010035 GO:0010193 GO:0010363 GO:0010563 GO:0010605 GO:0010646 GO:0010648 GO:0010941 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019220 GO:0019222 GO:0019538 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031347 GO:0031348 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0033549 GO:0033554 GO:0033673 GO:0034051 GO:0034599 GO:0035556 GO:0036211 GO:0042221 GO:0042325 GO:0042326 GO:0042493 GO:0042578 GO:0043067 GO:0043069 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043405 GO:0043407 GO:0043408 GO:0043409 GO:0043412 GO:0043549 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045088 GO:0045824 GO:0045859 GO:0045936 GO:0046677 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051338 GO:0051348 GO:0051716 GO:0060255 GO:0060548 GO:0065007 GO:0065009 GO:0070887 GO:0071704 GO:0071900 GO:0071901 GO:0071944 GO:0080090 GO:0080134 GO:0080135 GO:0140096 GO:1901564 GO:1901700 GO:1902531 GO:1902532
KEGG Pathways
Metabolic & Signaling
ko04016 map04016
Pfam Domains
Protein Families
DSPc

Protein Analysis

157

Amino Acids

17.31

Weight (kDa)

6.06

Isoelectric Point (pI)

46.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DSPc PF00782 32 - 161 3.4e-33 Dual specificity phosphatase, catalytic domain
Tc-R-P PF22785 37 - 126 2e-06 Polymorphic toxin system, DSP-PTPase phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 210
AclWI GGATC 2 cut(s) 76, 112
AcuI CTGAAG 1 cut(s) 135
AfiI CCNNNNNNNGG 1 cut(s) 419
AgsI TTSAA 3 cut(s) 224, 269, 449
AluBI AGCT 8 cut(s) 38, 52, 113, 144, 249, 263, 374, 436
AluI AGCT 8 cut(s) 38, 52, 113, 144, 249, 263, 374, 436
AlwI GGATC 2 cut(s) 76, 112
AlwNI CAGNNNCTG 1 cut(s) 113
AoxI GGCC 1 cut(s) 177
ApeKI GCWGC 1 cut(s) 433
AsuC2I CCSGG 1 cut(s) 420
BbvI GCAGC 1 cut(s) 445
BccI CCATC 1 cut(s) 464
BcnI CCSGG 1 cut(s) 420
BfaI CTAG 1 cut(s) 312
BfmI CTRYAG 1 cut(s) 324
BglII AGATCT 1 cut(s) 70
BisI GCNGC 1 cut(s) 434
BlsI GCNGC 1 cut(s) 435
Bme1390I CCNGG 1 cut(s) 420
BmiI GGNNCC 2 cut(s) 186, 392
BmrFI CCNGG 1 cut(s) 420
BpmI CTGGAG 1 cut(s) 422
BpuMI CCSGG 1 cut(s) 420
BsaJI CCNNGG 2 cut(s) 180, 460
Bsc4I CCNNNNNNNGG 1 cut(s) 419
Bse3DI GCAATG 1 cut(s) 292
BseDI CCNNGG 2 cut(s) 180, 460
BseGI GGATG 1 cut(s) 456
BseLI CCNNNNNNNGG 1 cut(s) 419
BseMI GCAATG 1 cut(s) 292
BseMII CTCAG 1 cut(s) 88
BseRI GAGGAG 1 cut(s) 177
BseXI GCAGC 1 cut(s) 445
BshFI GGCC 1 cut(s) 179
BsiSI CCGG 1 cut(s) 420
BslI CCNNNNNNNGG 1 cut(s) 419
BsnI GGCC 1 cut(s) 179
Bsp143I GATC 4 cut(s) 16, 70, 81, 104
BspANI GGCC 1 cut(s) 179
BspCNI CTCAG 1 cut(s) 87
BspLI GGNNCC 2 cut(s) 186, 392
BspPI GGATC 2 cut(s) 76, 112
BsrDI GCAATG 1 cut(s) 292
BssECI CCNNGG 2 cut(s) 180, 460
BssMI GATC 4 cut(s) 16, 70, 81, 104
BssT1I CCWWGG 2 cut(s) 180, 460
Bst4CI ACNGT 1 cut(s) 169
Bst6I CTCTTC 1 cut(s) 26
BstDEI CTNAG 1 cut(s) 74
BstF5I GGATG 1 cut(s) 456
BstKTI GATC 4 cut(s) 19, 73, 84, 107
BstMBI GATC 4 cut(s) 16, 70, 81, 104
BstMWI GCNNNNNNNGC 1 cut(s) 439
BstSCI CCNGG 1 cut(s) 418
BstSFI CTRYAG 1 cut(s) 324
BstV1I GCAGC 1 cut(s) 445
BstX2I RGATCY 2 cut(s) 70, 81
BstYI RGATCY 2 cut(s) 70, 81
BsuRI GGCC 1 cut(s) 179
BtsCI GGATG 1 cut(s) 456
CaiI CAGNNNCTG 1 cut(s) 113
CviAII CATG 4 cut(s) 158, 301, 353, 471
DdeI CTNAG 1 cut(s) 74
DpnI GATC 4 cut(s) 18, 72, 83, 106
DpnII GATC 4 cut(s) 16, 70, 81, 104
Eam1104I CTCTTC 1 cut(s) 26
EarI CTCTTC 1 cut(s) 26
Eco130I CCWWGG 2 cut(s) 180, 460
Eco57I CTGAAG 1 cut(s) 135
EcoT14I CCWWGG 2 cut(s) 180, 460
EcoT22I ATGCAT 1 cut(s) 472
ErhI CCWWGG 2 cut(s) 180, 460
FaeI CATG 4 cut(s) 161, 304, 356, 474
FatI CATG 4 cut(s) 157, 300, 352, 470
FblI GTMKAC 1 cut(s) 210
Fnu4HI GCNGC 1 cut(s) 434
FokI GGATG 1 cut(s) 443
Fsp4HI GCNGC 1 cut(s) 434
FspBI CTAG 1 cut(s) 312
GluI GCNGC 1 cut(s) 434
GsuI CTGGAG 1 cut(s) 422
HaeIII GGCC 1 cut(s) 179
HapII CCGG 1 cut(s) 420
Hin1II CATG 4 cut(s) 161, 304, 356, 474
HinfI GANTC 2 cut(s) 27, 363
HpaII CCGG 1 cut(s) 420
Hpy166II GTNNAC 1 cut(s) 211
Hpy188I TCNGA 2 cut(s) 26, 32
Hpy188III TCNNGA 1 cut(s) 197
Hpy8I GTNNAC 1 cut(s) 211
Hpy99I CGWCG 1 cut(s) 399
HpyAV CCTTC 1 cut(s) 53
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4V TGCA 1 cut(s) 470
HpyF10VI GCNNNNNNNGC 1 cut(s) 439
HpyF3I CTNAG 1 cut(s) 74
Hsp92II CATG 4 cut(s) 161, 304, 356, 474
Kzo9I GATC 4 cut(s) 16, 70, 81, 104
LmnI GCTCC 3 cut(s) 190, 390, 441
LpnPI CCDG 8 cut(s) 59, 74, 210, 258, 353, 389, 433, 452
Lsp1109I GCAGC 1 cut(s) 445
MaeI CTAG 1 cut(s) 312
MaeIII GTNAC 1 cut(s) 319
MalI GATC 4 cut(s) 18, 72, 83, 106
MboI GATC 4 cut(s) 16, 70, 81, 104
MboII GAAGA 1 cut(s) 13
MflI RGATCY 2 cut(s) 70, 81
MluCI AATT 2 cut(s) 40, 443
MlyI GAGTC 1 cut(s) 36
MmeI TCCRAC 2 cut(s) 10, 109
MnlI CCTC 2 cut(s) 56, 198
Mph1103I ATGCAT 1 cut(s) 472
MseI TTAA 1 cut(s) 164
MslI CAYNNNNRTG 1 cut(s) 305
MspI CCGG 1 cut(s) 420
MspR9I CCNGG 1 cut(s) 420
MwoI GCNNNNNNNGC 1 cut(s) 439
NciI CCSGG 1 cut(s) 420
NdeII GATC 4 cut(s) 16, 70, 81, 104
NlaIII CATG 4 cut(s) 161, 304, 356, 474
NlaIV GGNNCC 2 cut(s) 186, 392
NmuCI GTSAC 1 cut(s) 319
NsiI ATGCAT 1 cut(s) 472
PfeI GAWTC 1 cut(s) 363
PkrI GCNGC 1 cut(s) 435
PleI GAGTC 1 cut(s) 35
PpsI GAGTC 1 cut(s) 35
PspN4I GGNNCC 2 cut(s) 186, 392
PstNI CAGNNNCTG 1 cut(s) 113
PsuI RGATCY 2 cut(s) 70, 81
RseI CAYNNNNRTG 1 cut(s) 305
SaqAI TTAA 1 cut(s) 164
SatI GCNGC 1 cut(s) 434
Sau3AI GATC 4 cut(s) 16, 70, 81, 104
SchI GAGTC 1 cut(s) 36
ScrFI CCNGG 1 cut(s) 420
SfcI CTRYAG 1 cut(s) 324
SmiMI CAYNNNNRTG 1 cut(s) 305
Sse9I AATT 2 cut(s) 40, 443
SspMI CTAG 1 cut(s) 312
StyD4I CCNGG 1 cut(s) 418
StyI CCWWGG 2 cut(s) 180, 460
TaaI ACNGT 1 cut(s) 169
TaqI TCGA 3 cut(s) 57, 234, 255
TasI AATT 2 cut(s) 40, 443
TfiI GAWTC 1 cut(s) 363
Tru1I TTAA 1 cut(s) 164
Tru9I TTAA 1 cut(s) 164
TseFI GTSAC 1 cut(s) 319
TseI GCWGC 1 cut(s) 433
Tsp45I GTSAC 1 cut(s) 319
TspDTI ATGAA 6 cut(s) 88, 241, 281, 289, 359, 415
XmiI GTMKAC 1 cut(s) 210
XspI CTAG 1 cut(s) 312
Zsp2I ATGCAT 1 cut(s) 472
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.