Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000408.1

Orthogroup ID

OG0000627

Physical Location & Seq

Genomic Coordinates Forward (+)

5552 .. 7819

Gene Structure 2268 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000408.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

atggactcgaagatggaaaacggtttggagatggagtcatgcctgggtcttcaactaggaggaaactctcaatatttgaagcttgaaatttgccatattgcttctctttgtgagaaattgggatttccagcagaaggctttcgatccttgctattgggtctcttcttgggttcttttggagctgcaaatgacgaggaagaactgatcaggatgaacattactcacattttgatagtgggtagtgcaatgcctcctgcatatccaaatgattttgtctataaggttttaaaagatgggaacattcttctgtgctatggtgaagttatacgaaaatctgagatagaggatgcagaggaatgcttcaaacttttttctttggaagaggcggctaaatttgacgaagtgacccttgccaatgtgaacaacttcaaaaagcgctcaaaaagccagtcacctaatgcaatcgacaaagaatatatagtggtaagatccagatcagtctgcatcatttctattgttttgatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1517

Protein Analysis

175

Amino Acids

19.48

Weight (kDa)

4.95

Isoelectric Point (pI)

66.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06110 AT3G06110 AT3G06110 AT3G23610 AT3G23610 AT3G23610 AT3G23610 AT3G23610 AT3G23610
fragaria_vesca	FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14580 FvH4_4g14580 FvH4_4g14700
malus_domestica	MD16G1184700.v1.1
prunus_persica	Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1
pyrus_communis	pycom13g15890 pycom16g15510
rosa_chinensis	RchiOBHm_Chr4g0396121 RchiOBHm_Chr4g0418191 RchiOBHm_Chr4g0418241 RchiOBHm_Chr4g0418281 RchiOBHm_Chr7g0218781
rosa_laevigata	RLG00000007880 RLG00000007884 RLG00000009570
rosa_multiflora	Rmu_co8157318.1_g000001 Rmu_sc0000032.1_g000004 Rmu_sc0000032.1_g000006 Rmu_sc0000408.1_g000002 Rmu_sc0006325.1_g000026 Rmu_sc0009634.1_g000005
rosa_roxburghii	Rroxscaffold_5G00340920 Rroxscaffold_5G00361410 Rroxscaffold_5G00361430 Rroxscaffold_5G00361460
rosa_rugosa	Rorug01G0235100 Rorug03G0352200.1 Rorug04G0150700 Rorug04G0151000 Rorug04G0151300 Rorug04G0151700 Rorug04G0151800 Rorug07G0049500
rosa_samantha	Rh2BG097600 Rh2CG099500 Rh2DG096900 Rh4AG213100 Rh4AG213300 Rh4BG064600 Rh4BG217300 Rh4BG217600 Rh4BG217700 Rh4CG071200 Rh4CG224400 Rh4CG224700 Rh4CG225000 Rh4DG061500 Rh4DG211300 Rh4DG211500 Rh4DG211900 Rh5AG356200 Rh6DG255000 Rh7AG321200 Rh7CG337700 Rh7DG282300
rosa_wichuraiana	Rw4G018090 Rw4G018120 Rw6G006740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	386
AclWI	GGATC	2 cut(s)	138, 483
AcsI	RAATTY	2 cut(s)	87, 392
AfeI	AGCGCT	1 cut(s)	437
AfiI	CCNNNNNNNGG	1 cut(s)	134
AgsI	TTSAA	5 cut(s)	53, 79, 86, 364, 430
AjnI	CCWGG	1 cut(s)	42
AluBI	AGCT	2 cut(s)	82, 182
AluI	AGCT	2 cut(s)	82, 182
Alw26I	GTCTC	1 cut(s)	164
AlwI	GGATC	2 cut(s)	138, 483
Aor51HI	AGCGCT	1 cut(s)	437
ApeKI	GCWGC	1 cut(s)	182
ApoI	RAATTY	2 cut(s)	87, 392
ArsI	GACNNNNNNTTYG	2 cut(s)	434, 466
Asp700I	GAANNNNTTC	2 cut(s)	138, 425
AspLEI	GCGC	1 cut(s)	438
AsuHPI	GGTGA	2 cut(s)	329, 444
BbsI	GAAGAC	1 cut(s)	41
BbvI	GCAGC	1 cut(s)	169
BccI	CCATC	3 cut(s)	7, 25, 287
BciT130I	CCWGG	1 cut(s)	44
BclI	TGATCA	1 cut(s)	204
BcoDI	GTCTC	1 cut(s)	164
BfaI	CTAG	1 cut(s)	56
BfoI	RGCGCY	1 cut(s)	439
BisI	GCNGC	2 cut(s)	183, 387
BlsI	GCNGC	2 cut(s)	184, 388
Bme1390I	CCNGG	1 cut(s)	44
BmrFI	CCNGG	1 cut(s)	44
BmsI	GCATC	2 cut(s)	337, 513
BpiI	GAAGAC	1 cut(s)	41
BsaBI	GATNNNNATC	1 cut(s)	493
BsaI	GGTCTC	1 cut(s)	164
BsaJI	CCNNGG	1 cut(s)	43
BsaXI	ACNNNNNCTCC	2 cut(s)	20, 50
Bsc4I	CCNNNNNNNGG	1 cut(s)	134
Bse1I	ACTGG	1 cut(s)	448
Bse3DI	GCAATG	1 cut(s)	252
Bse8I	GATNNNNATC	1 cut(s)	493
BseBI	CCWGG	1 cut(s)	44
BseDI	CCNNGG	1 cut(s)	43
BseGI	GGATG	2 cut(s)	216, 352
BseJI	GATNNNNATC	1 cut(s)	493
BseLI	CCNNNNNNNGG	1 cut(s)	134
BseMI	GCAATG	1 cut(s)	252
BseMII	CTCAG	1 cut(s)	327
BseNI	ACTGG	1 cut(s)	448
BseXI	GCAGC	1 cut(s)	169
BslI	CCNNNNNNNGG	1 cut(s)	134
BsmAI	GTCTC	1 cut(s)	164
BsmI	GAATGC	1 cut(s)	362
Bso31I	GGTCTC	1 cut(s)	164
Bsp143I	GATC	4 cut(s)	143, 204, 488, 494
BspACI	CCGC	1 cut(s)	386
BspCNI	CTCAG	1 cut(s)	328
BspPI	GGATC	2 cut(s)	138, 483
BspTNI	GGTCTC	1 cut(s)	164
BsrDI	GCAATG	1 cut(s)	252
BsrI	ACTGG	1 cut(s)	448
BssECI	CCNNGG	1 cut(s)	43
BssMI	GATC	4 cut(s)	143, 204, 488, 494
Bst2UI	CCWGG	1 cut(s)	44
Bst4CI	ACNGT	1 cut(s)	23
Bst6I	CTCTTC	2 cut(s)	167, 375
BstDEI	CTNAG	1 cut(s)	336
BstF5I	GGATG	2 cut(s)	216, 352
BstH2I	RGCGCY	1 cut(s)	439
BstHHI	GCGC	1 cut(s)	438
BstKTI	GATC	4 cut(s)	146, 207, 491, 497
BstMAI	GTCTC	1 cut(s)	164
BstMBI	GATC	4 cut(s)	143, 204, 488, 494
BstMWI	GCNNNNNNNGC	1 cut(s)	444
BstNI	CCWGG	1 cut(s)	44
BstSCI	CCNGG	1 cut(s)	42
BstV1I	GCAGC	1 cut(s)	169
BstV2I	GAAGAC	1 cut(s)	41
BstX2I	RGATCY	1 cut(s)	488
BstYI	RGATCY	1 cut(s)	488
BtsCI	GGATG	2 cut(s)	216, 352
CfoI	GCGC	1 cut(s)	438
CviAII	CATG	1 cut(s)	39
CviJI	RGCY	5 cut(s)	82, 138, 182, 389, 447
CviKI_1	RGCY	5 cut(s)	82, 138, 182, 389, 447
DdeI	CTNAG	1 cut(s)	336
DpnI	GATC	4 cut(s)	145, 206, 490, 496
DpnII	GATC	4 cut(s)	143, 204, 488, 494
DraI	TTTAAA	1 cut(s)	288
Eam1104I	CTCTTC	2 cut(s)	167, 375
EarI	CTCTTC	2 cut(s)	167, 375
Eco31I	GGTCTC	1 cut(s)	164
Eco47III	AGCGCT	1 cut(s)	437
EcoRII	CCWGG	1 cut(s)	42
FaeI	CATG	1 cut(s)	42
FaiI	YATR	8 cut(s)	40, 96, 259, 279, 315, 326, 477, 479
FalI	AAGNNNNNCTT	2 cut(s)	393, 425
FatI	CATG	1 cut(s)	38
FbaI	TGATCA	1 cut(s)	204
Fnu4HI	GCNGC	2 cut(s)	183, 387
FokI	GGATG	2 cut(s)	223, 359
Fsp4HI	GCNGC	2 cut(s)	183, 387
FspBI	CTAG	1 cut(s)	56
GlaI	GCGC	1 cut(s)	437
GluI	GCNGC	2 cut(s)	183, 387
HaeII	RGCGCY	1 cut(s)	439
HhaI	GCGC	1 cut(s)	438
Hin1II	CATG	1 cut(s)	42
Hin6I	GCGC	1 cut(s)	436
HinP1I	GCGC	1 cut(s)	436
HindIII	AAGCTT	1 cut(s)	80
HinfI	GANTC	2 cut(s)	5, 35
HphI	GGTGA	2 cut(s)	329, 444
Hpy166II	GTNNAC	1 cut(s)	421
Hpy188I	TCNGA	1 cut(s)	337
Hpy188III	TCNNGA	2 cut(s)	208, 492
Hpy8I	GTNNAC	1 cut(s)	421
HpyAV	CCTTC	1 cut(s)	128
HpyCH4III	ACNGT	1 cut(s)	23
HpyCH4V	TGCA	6 cut(s)	185, 245, 257, 350, 461, 504
HpyF10VI	GCNNNNNNNGC	1 cut(s)	444
HpyF3I	CTNAG	1 cut(s)	336
Hsp92II	CATG	1 cut(s)	42
HspAI	GCGC	1 cut(s)	436
Ksp22I	TGATCA	1 cut(s)	204
Kzo9I	GATC	4 cut(s)	143, 204, 488, 494
LmnI	GCTCC	1 cut(s)	179
LpnPI	CCDG	7 cut(s)	29, 56, 141, 193, 267, 461, 505
Lsp1109I	GCAGC	1 cut(s)	169
LweI	GCATC	2 cut(s)	337, 513
MaeI	CTAG	1 cut(s)	56
MaeIII	GTNAC	2 cut(s)	403, 450
MalI	GATC	4 cut(s)	145, 206, 490, 496
MboI	GATC	4 cut(s)	143, 204, 488, 494
MboII	GAAGA	6 cut(s)	22, 41, 154, 209, 296, 392
MflI	RGATCY	1 cut(s)	488
MluCI	AATT	3 cut(s)	87, 116, 392
MlyI	GAGTC	1 cut(s)	44
MnlI	CCTC	6 cut(s)	53, 187, 261, 337, 346, 376
MroXI	GAANNNNTTC	2 cut(s)	138, 425
MseI	TTAA	1 cut(s)	287
MspR9I	CCNGG	1 cut(s)	44
Mva1269I	GAATGC	1 cut(s)	362
MvaI	CCWGG	1 cut(s)	44
MwoI	GCNNNNNNNGC	1 cut(s)	444
NdeII	GATC	4 cut(s)	143, 204, 488, 494
NlaIII	CATG	1 cut(s)	42
NmuCI	GTSAC	2 cut(s)	403, 450
PctI	GAATGC	1 cut(s)	362
PdmI	GAANNNNTTC	2 cut(s)	138, 425
PkrI	GCNGC	2 cut(s)	184, 388
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
Psp6I	CCWGG	1 cut(s)	42
PspGI	CCWGG	1 cut(s)	42
PsuI	RGATCY	1 cut(s)	488
SaqAI	TTAA	1 cut(s)	287
SatI	GCNGC	2 cut(s)	183, 387
Sau3AI	GATC	4 cut(s)	143, 204, 488, 494
SchI	GAGTC	1 cut(s)	44
ScrFI	CCNGG	1 cut(s)	44
SetI	ASST	4 cut(s)	84, 184, 285, 457
SfaNI	GCATC	2 cut(s)	337, 513
Sse9I	AATT	3 cut(s)	87, 116, 392
SsiI	CCGC	1 cut(s)	386
SspI	AATATT	1 cut(s)	74
SspMI	CTAG	1 cut(s)	56
StyD4I	CCNGG	1 cut(s)	42
TaaI	ACNGT	1 cut(s)	23
TaqI	TCGA	3 cut(s)	8, 142, 465
TasI	AATT	3 cut(s)	87, 116, 392
TauI	GCSGC	1 cut(s)	389
Tru1I	TTAA	1 cut(s)	287
Tru9I	TTAA	1 cut(s)	287
TseFI	GTSAC	2 cut(s)	403, 450
TseI	GCWGC	1 cut(s)	182
Tsp45I	GTSAC	2 cut(s)	403, 450
TspDTI	ATGAA	1 cut(s)	227
XapI	RAATTY	2 cut(s)	87, 392
XmnI	GAANNNNTTC	2 cut(s)	138, 425
XspI	CTAG	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.