Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000627

Physical Location & Seq

Genomic Coordinates Forward (+)

42161433 .. 42163720

Gene Structure 2288 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00361460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGATCCGATAGAAGATTCCCTCAGGAAACAAATATCTGCTTTGTTGAGAGTTATCAATGTGACAAAGTGCTGTAAGGAGGACAATGTTCCATGCACAATTGAAGAGGGTCTCTTCTTGGGTTCCATTGGAGCTGCACATAACAAGGACGAACTTAAAAAATTAAACGTCACTCACATTTTGACTGTGGCCGGTTCATTGGCACCTGCATATCCAAATGAATTTGTGTATAAGGTTTTGAATGTTGTGGACAAAGAATCAACAGACCTGAAACAGCACTTTGACGAGTGTTTCAATTATATTGAAGAAGGTAAAAGATCTGGTGGTGTGTTGGTTCATTGCTTTGTGGGAAAATCCAGGAGTGTGACTATTGTTCTTGCTTATCTGATGAAAAAGCATGGTATGAGTCTATCTGAAGCTCTTGAACATGTGAGGAGCAGACGGCCACAGGCATCTCCAAATGCTGGTTTTATGTCACAACTGCAGGACTTTGAAAGGTCCCTTCACGCAAATGAAGAGAACAAGATAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005488 GO:0005515 GO:0005516 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008138 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04360 ko04810 map04360 map04810

Pfam Domains

Protein Families

DSPc

Protein Analysis

177

Amino Acids

19.8

Weight (kDa)

6.65

Isoelectric Point (pI)

70.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DSPc	PF00782	38 - 166	8.6e-30	Dual specificity phosphatase, catalytic domain
PTP-SAK	PF22784	47 - 153	6.7e-06	Swiss Army Knife protein, DSP-PTPase phosphatase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06110 AT3G06110 AT3G06110 AT3G23610 AT3G23610 AT3G23610 AT3G23610 AT3G23610 AT3G23610
fragaria_vesca	FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14580 FvH4_4g14580 FvH4_4g14700
malus_domestica	MD16G1184700.v1.1
prunus_persica	Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1
pyrus_communis	pycom13g15890 pycom16g15510
rosa_chinensis	RchiOBHm_Chr4g0396121 RchiOBHm_Chr4g0418191 RchiOBHm_Chr4g0418241 RchiOBHm_Chr4g0418281 RchiOBHm_Chr7g0218781
rosa_laevigata	RLG00000007880 RLG00000007884 RLG00000009570
rosa_multiflora	Rmu_co8157318.1_g000001 Rmu_sc0000032.1_g000004 Rmu_sc0000032.1_g000006 Rmu_sc0000408.1_g000002 Rmu_sc0006325.1_g000026 Rmu_sc0009634.1_g000005
rosa_roxburghii	Rroxscaffold_5G00340920 Rroxscaffold_5G00361410 Rroxscaffold_5G00361430 Rroxscaffold_5G00361460
rosa_rugosa	Rorug01G0235100 Rorug03G0352200.1 Rorug04G0150700 Rorug04G0151000 Rorug04G0151300 Rorug04G0151700 Rorug04G0151800 Rorug07G0049500
rosa_samantha	Rh2BG097600 Rh2CG099500 Rh2DG096900 Rh4AG213100 Rh4AG213300 Rh4BG064600 Rh4BG217300 Rh4BG217600 Rh4BG217700 Rh4CG071200 Rh4CG224400 Rh4CG224700 Rh4CG225000 Rh4DG061500 Rh4DG211300 Rh4DG211500 Rh4DG211900 Rh5AG356200 Rh6DG255000 Rh7AG321200 Rh7CG337700 Rh7DG282300
rosa_wichuraiana	Rw4G018090 Rw4G018120 Rw6G006740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	214
Acc36I	ACCTGC	1 cut(s)	214
AccB1I	GGYRCC	1 cut(s)	202
AccB7I	CCANNNNNTGG	1 cut(s)	464
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	2 cut(s)	189, 443
AcsI	RAATTY	1 cut(s)	221
AcuI	CTGAAG	1 cut(s)	435
AfiI	CCNNNNNNNGG	1 cut(s)	464
AflIII	ACRYGT	1 cut(s)	427
AgsI	TTSAA	6 cut(s)	104, 241, 295, 305, 425, 494
AjnI	CCWGG	1 cut(s)	356
AluBI	AGCT	2 cut(s)	134, 419
AluI	AGCT	2 cut(s)	134, 419
Alw26I	GTCTC	1 cut(s)	116
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	2 cut(s)	189, 443
ApeKI	GCWGC	1 cut(s)	134
ApoI	RAATTY	1 cut(s)	221
AspS9I	GGNCC	1 cut(s)	498
AvaII	GGWCC	1 cut(s)	498
AxyI	CCTNAGG	1 cut(s)	23
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	202
BbvI	GCAGC	1 cut(s)	121
BceAI	ACGGC	1 cut(s)	458
BciT130I	CCWGG	1 cut(s)	358
BcoDI	GTCTC	1 cut(s)	116
BfmI	CTRYAG	1 cut(s)	482
BfuAI	ACCTGC	1 cut(s)	214
BglII	AGATCT	1 cut(s)	317
BisI	GCNGC	1 cut(s)	135
BlsI	GCNGC	1 cut(s)	136
Bme1390I	CCNGG	1 cut(s)	358
Bme18I	GGWCC	1 cut(s)	498
BmgT120I	GGNCC	1 cut(s)	498
BmiI	GGNNCC	4 cut(s)	6, 124, 204, 500
BmrFI	CCNGG	1 cut(s)	358
BmsI	GCATC	1 cut(s)	461
BsaI	GGTCTC	1 cut(s)	116
Bsc4I	CCNNNNNNNGG	1 cut(s)	464
Bse118I	RCCGGY	1 cut(s)	191
Bse21I	CCTNAGG	1 cut(s)	23
Bse3DI	GCAATG	1 cut(s)	337
BseBI	CCWGG	1 cut(s)	358
BseLI	CCNNNNNNNGG	1 cut(s)	464
BseMI	GCAATG	1 cut(s)	337
BseMII	CTCAG	1 cut(s)	37
BseRI	GAGGAG	1 cut(s)	448
BseXI	GCAGC	1 cut(s)	121
BsgI	GTGCAG	1 cut(s)	120
BshFI	GGCC	2 cut(s)	191, 445
BshNI	GGYRCC	1 cut(s)	202
BsiSI	CCGG	1 cut(s)	192
BslFI	GGGAC	1 cut(s)	484
BslI	CCNNNNNNNGG	1 cut(s)	464
BsmAI	GTCTC	1 cut(s)	116
BsmFI	GGGAC	1 cut(s)	484
BsnI	GGCC	2 cut(s)	191, 445
Bso31I	GGTCTC	1 cut(s)	116
Bsp143I	GATC	2 cut(s)	4, 317
BspANI	GGCC	2 cut(s)	191, 445
BspCNI	CTCAG	1 cut(s)	36
BspLI	GGNNCC	4 cut(s)	6, 124, 204, 500
BspMAI	CTGCAG	1 cut(s)	486
BspMI	ACCTGC	1 cut(s)	214
BspPI	GGATC	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	202
BspTNI	GGTCTC	1 cut(s)	116
BsrDI	GCAATG	1 cut(s)	337
BsrFI	RCCGGY	1 cut(s)	191
BssAI	RCCGGY	1 cut(s)	191
BssMI	GATC	2 cut(s)	4, 317
Bst2UI	CCWGG	1 cut(s)	358
Bst4CI	ACNGT	1 cut(s)	187
Bst6I	CTCTTC	3 cut(s)	99, 119, 510
BstDEI	CTNAG	1 cut(s)	23
BstKTI	GATC	2 cut(s)	7, 320
BstMAI	GTCTC	1 cut(s)	116
BstMBI	GATC	2 cut(s)	4, 317
BstNI	CCWGG	1 cut(s)	358
BstNSI	RCATGY	1 cut(s)	431
BstSCI	CCNGG	1 cut(s)	356
BstSFI	CTRYAG	1 cut(s)	482
BstV1I	GCAGC	1 cut(s)	121
BstX2I	RGATCY	2 cut(s)	4, 317
BstYI	RGATCY	2 cut(s)	4, 317
Bsu36I	CCTNAGG	1 cut(s)	23
BsuRI	GGCC	2 cut(s)	191, 445
BveI	ACCTGC	1 cut(s)	214
Cfr10I	RCCGGY	1 cut(s)	191
Cfr13I	GGNCC	1 cut(s)	498
CviAII	CATG	3 cut(s)	93, 398, 428
CviJI	RGCY	4 cut(s)	134, 191, 419, 445
CviKI_1	RGCY	4 cut(s)	134, 191, 419, 445
DdeI	CTNAG	1 cut(s)	23
DpnI	GATC	2 cut(s)	6, 319
DpnII	GATC	2 cut(s)	4, 317
EaeI	YGGCCR	2 cut(s)	189, 443
Eam1104I	CTCTTC	3 cut(s)	99, 119, 510
EarI	CTCTTC	3 cut(s)	99, 119, 510
Eco31I	GGTCTC	1 cut(s)	116
Eco47I	GGWCC	1 cut(s)	498
Eco57I	CTGAAG	1 cut(s)	435
Eco81I	CCTNAGG	1 cut(s)	23
EcoO109I	RGGNCCY	1 cut(s)	498
EcoRII	CCWGG	1 cut(s)	356
FaeI	CATG	3 cut(s)	96, 401, 431
FaiI	YATR	9 cut(s)	94, 141, 211, 231, 300, 399, 404, 429, 473
FaqI	GGGAC	1 cut(s)	484
FatI	CATG	3 cut(s)	92, 397, 427
Fnu4HI	GCNGC	1 cut(s)	135
Fsp4HI	GCNGC	1 cut(s)	135
GluI	GCNGC	1 cut(s)	135
HaeIII	GGCC	2 cut(s)	191, 445
HapII	CCGG	1 cut(s)	192
Hin1II	CATG	3 cut(s)	96, 401, 431
HinfI	GANTC	3 cut(s)	17, 257, 406
HpaII	CCGG	1 cut(s)	192
Hpy166II	GTNNAC	1 cut(s)	250
Hpy188I	TCNGA	3 cut(s)	9, 387, 415
Hpy188III	TCNNGA	2 cut(s)	25, 422
Hpy8I	GTNNAC	1 cut(s)	250
HpyAV	CCTTC	2 cut(s)	302, 512
HpyCH4III	ACNGT	1 cut(s)	187
HpyCH4IV	ACGT	1 cut(s)	168
HpyCH4V	TGCA	4 cut(s)	96, 137, 209, 484
HpyF3I	CTNAG	1 cut(s)	23
HpySE526I	ACGT	1 cut(s)	168
Hsp92II	CATG	3 cut(s)	96, 401, 431
Kzo9I	GATC	2 cut(s)	4, 317
LmnI	GCTCC	2 cut(s)	131, 435
Lsp1109I	GCAGC	1 cut(s)	121
LweI	GCATC	1 cut(s)	461
MaeII	ACGT	1 cut(s)	168
MaeIII	GTNAC	4 cut(s)	61, 169, 364, 474
MalI	GATC	2 cut(s)	6, 319
MboI	GATC	2 cut(s)	4, 317
MboII	GAAGA	5 cut(s)	26, 106, 116, 317, 527
MfeI	CAATTG	1 cut(s)	99
MflI	RGATCY	2 cut(s)	4, 317
MluCI	AATT	5 cut(s)	99, 161, 221, 295, 529
MlyI	GAGTC	1 cut(s)	415
MnlI	CCTC	4 cut(s)	32, 73, 100, 426
MseI	TTAA	2 cut(s)	156, 164
MslI	CAYNNNNRTG	1 cut(s)	510
MspI	CCGG	1 cut(s)	192
MspR9I	CCNGG	1 cut(s)	358
MunI	CAATTG	1 cut(s)	99
MvaI	CCWGG	1 cut(s)	358
NdeII	GATC	2 cut(s)	4, 317
NlaIII	CATG	3 cut(s)	96, 401, 431
NlaIV	GGNNCC	4 cut(s)	6, 124, 204, 500
NmuCI	GTSAC	4 cut(s)	61, 169, 364, 474
NspI	RCATGY	1 cut(s)	431
PaqCI	CACCTGC	1 cut(s)	214
PciI	ACATGT	1 cut(s)	427
PfeI	GAWTC	2 cut(s)	17, 257
PflMI	CCANNNNNTGG	1 cut(s)	464
PfoI	TCCNGGA	1 cut(s)	356
PkrI	GCNGC	1 cut(s)	136
PleI	GAGTC	1 cut(s)	414
PpsI	GAGTC	1 cut(s)	414
PpuMI	RGGWCCY	1 cut(s)	498
PscI	ACATGT	1 cut(s)	427
Psp5II	RGGWCCY	1 cut(s)	498
Psp6I	CCWGG	1 cut(s)	356
PspGI	CCWGG	1 cut(s)	356
PspN4I	GGNNCC	4 cut(s)	6, 124, 204, 500
PspPI	GGNCC	1 cut(s)	498
PspPPI	RGGWCCY	1 cut(s)	498
PstI	CTGCAG	1 cut(s)	486
PsuI	RGATCY	2 cut(s)	4, 317
RseI	CAYNNNNRTG	1 cut(s)	510
SaqAI	TTAA	2 cut(s)	156, 164
SatI	GCNGC	1 cut(s)	135
Sau3AI	GATC	2 cut(s)	4, 317
Sau96I	GGNCC	1 cut(s)	498
SchI	GAGTC	1 cut(s)	415
ScrFI	CCNGG	1 cut(s)	358
SetI	ASST	8 cut(s)	136, 171, 208, 237, 270, 313, 421, 500
SfaNI	GCATC	1 cut(s)	461
SfcI	CTRYAG	1 cut(s)	482
SinI	GGWCC	1 cut(s)	498
SmiMI	CAYNNNNRTG	1 cut(s)	510
Sse9I	AATT	5 cut(s)	99, 161, 221, 295, 529
StyD4I	CCNGG	1 cut(s)	356
TaaI	ACNGT	1 cut(s)	187
TaiI	ACGT	1 cut(s)	171
TasI	AATT	5 cut(s)	99, 161, 221, 295, 529
TfiI	GAWTC	2 cut(s)	17, 257
Tru1I	TTAA	2 cut(s)	156, 164
Tru9I	TTAA	2 cut(s)	156, 164
TseFI	GTSAC	4 cut(s)	61, 169, 364, 474
TseI	GCWGC	1 cut(s)	134
Tsp45I	GTSAC	4 cut(s)	61, 169, 364, 474
TspDTI	ATGAA	5 cut(s)	186, 234, 326, 404, 528
Van91I	CCANNNNNTGG	1 cut(s)	464
VpaK11BI	GGWCC	1 cut(s)	498
XapI	RAATTY	1 cut(s)	221
XceI	RCATGY	1 cut(s)	431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.