Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000627

Physical Location & Seq

Genomic Coordinates Forward (+)

18376727 .. 18380205

Gene Structure 3479 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g14700.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGCTGACACTTGTTTTACTTGCTTTCCGATTCTCAGGGTCTCTTCTTGGGTTCTATTGGAGCTGCAAACAACAAGGACGAACTCAAAAAGTATTGAATGTTACGGACTCAGAATGCACAAACCTAGGACAACACTTTGATGAATGTTTCAACTATATTGAAGAAGCTAAGGGATCTGGCAGCAGAAGATCAAGAAGGCAGTGGCAAAAACCCACGTGGCGTCCATCTGTTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005488 GO:0005515 GO:0005516 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008138 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04360 ko04810 map04360 map04810

Pfam Domains

Protein Families

DSPc

Protein Analysis

79

Amino Acids

9.08

Weight (kDa)

9.38

Isoelectric Point (pI)

76.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06110 AT3G06110 AT3G06110 AT3G23610 AT3G23610 AT3G23610 AT3G23610 AT3G23610 AT3G23610
fragaria_vesca	FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14580 FvH4_4g14580 FvH4_4g14700
malus_domestica	MD16G1184700.v1.1
prunus_persica	Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1
pyrus_communis	pycom13g15890 pycom16g15510
rosa_chinensis	RchiOBHm_Chr4g0396121 RchiOBHm_Chr4g0418191 RchiOBHm_Chr4g0418241 RchiOBHm_Chr4g0418281 RchiOBHm_Chr7g0218781
rosa_laevigata	RLG00000007880 RLG00000007884 RLG00000009570
rosa_multiflora	Rmu_co8157318.1_g000001 Rmu_sc0000032.1_g000004 Rmu_sc0000032.1_g000006 Rmu_sc0000408.1_g000002 Rmu_sc0006325.1_g000026 Rmu_sc0009634.1_g000005
rosa_roxburghii	Rroxscaffold_5G00340920 Rroxscaffold_5G00361410 Rroxscaffold_5G00361430 Rroxscaffold_5G00361460
rosa_rugosa	Rorug01G0235100 Rorug03G0352200.1 Rorug04G0150700 Rorug04G0151000 Rorug04G0151300 Rorug04G0151700 Rorug04G0151800 Rorug07G0049500
rosa_samantha	Rh2BG097600 Rh2CG099500 Rh2DG096900 Rh4AG213100 Rh4AG213300 Rh4BG064600 Rh4BG217300 Rh4BG217600 Rh4BG217700 Rh4CG071200 Rh4CG224400 Rh4CG224700 Rh4CG225000 Rh4DG061500 Rh4DG211300 Rh4DG211500 Rh4DG211900 Rh5AG356200 Rh6DG255000 Rh7AG321200 Rh7CG337700 Rh7DG282300
rosa_wichuraiana	Rw4G018090 Rw4G018120 Rw6G006740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	181
AcvI	CACGTG	1 cut(s)	216
AcyI	GRCGYC	1 cut(s)	220
AgsI	TTSAA	3 cut(s)	97, 151, 161
AluBI	AGCT	2 cut(s)	63, 167
AluI	AGCT	2 cut(s)	63, 167
Alw26I	GTCTC	1 cut(s)	45
AlwI	GGATC	1 cut(s)	181
ApeKI	GCWGC	2 cut(s)	63, 180
AspA2I	CCTAGG	1 cut(s)	124
AvrII	CCTAGG	1 cut(s)	124
BbrPI	CACGTG	1 cut(s)	216
BbvI	GCAGC	2 cut(s)	50, 192
BccI	CCATC	1 cut(s)	232
BcoDI	GTCTC	1 cut(s)	45
BfaI	CTAG	1 cut(s)	125
BisI	GCNGC	2 cut(s)	64, 181
BlnI	CCTAGG	1 cut(s)	124
BlsI	GCNGC	2 cut(s)	65, 182
Bpu10I	CCTNAGC	1 cut(s)	168
BsaAI	YACGTR	1 cut(s)	216
BsaHI	GRCGYC	1 cut(s)	220
BsaI	GGTCTC	1 cut(s)	45
BsaJI	CCNNGG	1 cut(s)	124
BseDI	CCNNGG	1 cut(s)	124
BseMII	CTCAG	2 cut(s)	48, 123
BseXI	GCAGC	2 cut(s)	50, 192
BsmAI	GTCTC	1 cut(s)	45
BsmI	GAATGC	1 cut(s)	119
Bso31I	GGTCTC	1 cut(s)	45
Bsp143I	GATC	2 cut(s)	173, 188
BspCNI	CTCAG	2 cut(s)	47, 122
BspPI	GGATC	1 cut(s)	181
BspTNI	GGTCTC	1 cut(s)	45
BssECI	CCNNGG	1 cut(s)	124
BssMI	GATC	2 cut(s)	173, 188
BssNI	GRCGYC	1 cut(s)	220
BssT1I	CCWWGG	1 cut(s)	124
Bst6I	CTCTTC	1 cut(s)	48
BstACI	GRCGYC	1 cut(s)	220
BstBAI	YACGTR	1 cut(s)	216
BstDEI	CTNAG	3 cut(s)	34, 109, 168
BstKTI	GATC	2 cut(s)	176, 191
BstMAI	GTCTC	1 cut(s)	45
BstMBI	GATC	2 cut(s)	173, 188
BstV1I	GCAGC	2 cut(s)	50, 192
BstX2I	RGATCY	1 cut(s)	173
BstYI	RGATCY	1 cut(s)	173
BtsI	GCAGTG	1 cut(s)	206
BtsIMutI	CAGTG	1 cut(s)	206
CseI	GACGC	1 cut(s)	209
CviJI	RGCY	2 cut(s)	63, 167
CviKI_1	RGCY	2 cut(s)	63, 167
DdeI	CTNAG	3 cut(s)	34, 109, 168
DpnI	GATC	2 cut(s)	175, 190
DpnII	GATC	2 cut(s)	173, 188
Eam1104I	CTCTTC	1 cut(s)	48
EarI	CTCTTC	1 cut(s)	48
Eco130I	CCWWGG	1 cut(s)	124
Eco31I	GGTCTC	1 cut(s)	45
Eco72I	CACGTG	1 cut(s)	216
EcoT14I	CCWWGG	1 cut(s)	124
ErhI	CCWWGG	1 cut(s)	124
FaiI	YATR	1 cut(s)	156
Fnu4HI	GCNGC	2 cut(s)	64, 181
Fsp4HI	GCNGC	2 cut(s)	64, 181
FspBI	CTAG	1 cut(s)	125
GluI	GCNGC	2 cut(s)	64, 181
HgaI	GACGC	1 cut(s)	209
Hin1I	GRCGYC	1 cut(s)	220
HinfI	GANTC	2 cut(s)	30, 107
Hpy188I	TCNGA	2 cut(s)	29, 112
Hpy188III	TCNNGA	1 cut(s)	192
HpyAV	CCTTC	1 cut(s)	189
HpyCH4IV	ACGT	1 cut(s)	215
HpyCH4V	TGCA	2 cut(s)	66, 117
HpyF3I	CTNAG	3 cut(s)	34, 109, 168
HpySE526I	ACGT	1 cut(s)	215
Hsp92I	GRCGYC	1 cut(s)	220
Kzo9I	GATC	2 cut(s)	173, 188
LmnI	GCTCC	1 cut(s)	60
LpnPI	CCDG	2 cut(s)	21, 162
Lsp1109I	GCAGC	2 cut(s)	50, 192
MaeI	CTAG	1 cut(s)	125
MaeII	ACGT	1 cut(s)	215
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	2 cut(s)	175, 190
MboI	GATC	2 cut(s)	173, 188
MboII	GAAGA	3 cut(s)	35, 173, 198
MflI	RGATCY	1 cut(s)	173
MlyI	GAGTC	1 cut(s)	101
MslI	CAYNNNNRTG	1 cut(s)	138
Mva1269I	GAATGC	1 cut(s)	119
NdeII	GATC	2 cut(s)	173, 188
PctI	GAATGC	1 cut(s)	119
PfeI	GAWTC	1 cut(s)	30
PkrI	GCNGC	2 cut(s)	65, 182
PleI	GAGTC	1 cut(s)	101
PmaCI	CACGTG	1 cut(s)	216
PmlI	CACGTG	1 cut(s)	216
PpsI	GAGTC	1 cut(s)	101
Ppu21I	YACGTR	1 cut(s)	216
PspCI	CACGTG	1 cut(s)	216
PsuI	RGATCY	1 cut(s)	173
RseI	CAYNNNNRTG	1 cut(s)	138
SatI	GCNGC	2 cut(s)	64, 181
Sau3AI	GATC	2 cut(s)	173, 188
SchI	GAGTC	1 cut(s)	101
SetI	ASST	4 cut(s)	65, 126, 169, 218
SmiMI	CAYNNNNRTG	1 cut(s)	138
SspMI	CTAG	1 cut(s)	125
StyI	CCWWGG	1 cut(s)	124
TaiI	ACGT	1 cut(s)	218
TfiI	GAWTC	1 cut(s)	30
TscAI	CASTG	1 cut(s)	206
TseI	GCWGC	2 cut(s)	63, 180
TspDTI	ATGAA	1 cut(s)	156
TspGWI	ACGGA	1 cut(s)	119
TspRI	CASTG	1 cut(s)	206
XmaJI	CCTAGG	1 cut(s)	124
XspI	CTAG	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.