Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0000627

Physical Location & Seq

Genomic Coordinates Forward (+)

44547012 .. 44547351

Gene Structure 340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG255000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGAATGGGGGATACTATAAAGAGGACAATATCCCCTGCCAGATTGAAGAGGGTCTCTTCTTGGGTTCTTTTGGAGCTGCAAATGACGAGGAAGAACTGAACAGGTTGAACATTACTCACATTTTGACAGTGGGTAGTGCAATGCCTCCTGCATATCCAAATGATTTTGTCTATAAGGTTTTAAAAGATGGGAACATTCTTCTGTGCTGTGGTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005488 GO:0005515 GO:0005516 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008138 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04360 ko04810 map04360 map04810

Pfam Domains

Protein Families

DSPc

Protein Analysis

72

Amino Acids

7.93

Weight (kDa)

4.34

Isoelectric Point (pI)

63.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06110 AT3G06110 AT3G06110 AT3G23610 AT3G23610 AT3G23610 AT3G23610 AT3G23610 AT3G23610
fragaria_vesca	FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14580 FvH4_4g14580 FvH4_4g14700
malus_domestica	MD16G1184700.v1.1
prunus_persica	Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1
pyrus_communis	pycom13g15890 pycom16g15510
rosa_chinensis	RchiOBHm_Chr4g0396121 RchiOBHm_Chr4g0418191 RchiOBHm_Chr4g0418241 RchiOBHm_Chr4g0418281 RchiOBHm_Chr7g0218781
rosa_laevigata	RLG00000007880 RLG00000007884 RLG00000009570
rosa_multiflora	Rmu_co8157318.1_g000001 Rmu_sc0000032.1_g000004 Rmu_sc0000032.1_g000006 Rmu_sc0000408.1_g000002 Rmu_sc0006325.1_g000026 Rmu_sc0009634.1_g000005
rosa_roxburghii	Rroxscaffold_5G00340920 Rroxscaffold_5G00361410 Rroxscaffold_5G00361430 Rroxscaffold_5G00361460
rosa_rugosa	Rorug01G0235100 Rorug03G0352200.1 Rorug04G0150700 Rorug04G0151000 Rorug04G0151300 Rorug04G0151700 Rorug04G0151800 Rorug07G0049500
rosa_samantha	Rh2BG097600 Rh2CG099500 Rh2DG096900 Rh4AG213100 Rh4AG213300 Rh4BG064600 Rh4BG217300 Rh4BG217600 Rh4BG217700 Rh4CG071200 Rh4CG224400 Rh4CG224700 Rh4CG225000 Rh4DG061500 Rh4DG211300 Rh4DG211500 Rh4DG211900 Rh5AG356200 Rh6DG255000 Rh7AG321200 Rh7CG337700 Rh7DG282300
rosa_wichuraiana	Rw4G018090 Rw4G018120 Rw6G006740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	2 cut(s)	47, 109
AluBI	AGCT	1 cut(s)	77
AluI	AGCT	1 cut(s)	77
Alw26I	GTCTC	1 cut(s)	59
ApeKI	GCWGC	1 cut(s)	77
BbvI	GCAGC	1 cut(s)	64
BccI	CCATC	1 cut(s)	182
BciVI	GTATCC	1 cut(s)	5
BcoDI	GTCTC	1 cut(s)	59
BfuI	GTATCC	1 cut(s)	5
BisI	GCNGC	1 cut(s)	78
BlsI	GCNGC	1 cut(s)	79
BsaI	GGTCTC	1 cut(s)	59
Bse3DI	GCAATG	1 cut(s)	147
BseMI	GCAATG	1 cut(s)	147
BseXI	GCAGC	1 cut(s)	64
BsmAI	GTCTC	1 cut(s)	59
Bso31I	GGTCTC	1 cut(s)	59
BspTNI	GGTCTC	1 cut(s)	59
BsrDI	GCAATG	1 cut(s)	147
Bst4CI	ACNGT	1 cut(s)	130
Bst6I	CTCTTC	2 cut(s)	42, 62
BstMAI	GTCTC	1 cut(s)	59
BstV1I	GCAGC	1 cut(s)	64
BsuI	GTATCC	1 cut(s)	5
BtsIMutI	CAGTG	1 cut(s)	135
CviJI	RGCY	1 cut(s)	77
CviKI_1	RGCY	1 cut(s)	77
DraI	TTTAAA	1 cut(s)	183
Eam1104I	CTCTTC	2 cut(s)	42, 62
EarI	CTCTTC	2 cut(s)	42, 62
Eco31I	GGTCTC	1 cut(s)	59
FaiI	YATR	3 cut(s)	18, 154, 174
Fnu4HI	GCNGC	1 cut(s)	78
Fsp4HI	GCNGC	1 cut(s)	78
GluI	GCNGC	1 cut(s)	78
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4V	TGCA	3 cut(s)	80, 140, 152
LmnI	GCTCC	1 cut(s)	74
LpnPI	CCDG	4 cut(s)	49, 53, 88, 162
Lsp1109I	GCAGC	1 cut(s)	64
MboII	GAAGA	4 cut(s)	49, 59, 104, 191
MnlI	CCTC	4 cut(s)	16, 43, 82, 156
MseI	TTAA	1 cut(s)	182
PkrI	GCNGC	1 cut(s)	79
SaqAI	TTAA	1 cut(s)	182
SatI	GCNGC	1 cut(s)	78
SetI	ASST	3 cut(s)	79, 107, 180
SgeI	CNNG	6 cut(s)	48, 52, 73, 100, 115, 161
TaaI	ACNGT	1 cut(s)	130
Tru1I	TTAA	1 cut(s)	182
Tru9I	TTAA	1 cut(s)	182
TscAI	CASTG	1 cut(s)	135
TseI	GCWGC	1 cut(s)	77
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.