Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0000627

Physical Location & Seq

Genomic Coordinates Reverse (-)

37812771 .. 37818027

Gene Structure 5257 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG217700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGCTCAGGTAGATGATTACCTTAGGAAACAAGCTGCTGAATTGTTGCAAGCTTTGAATGAGGGATGCTATCAAGAGGACAATATCCCCTGCCAGATTGAAGAGAGTCTCTTCTTGGGTTCTTTTAGAGCTGCAAATAACGAGGAAGAACTGAACAGGTTGAACATTACTCACATTTTGACCGTGGGTAGTGCAATGCCTCCTGCATATCCAAATGATTTTGTCTATAAACACTTTGATGAGTGTTTCGATTACATTGAGGAAGCTAAAAGATCTGGTGGCAGTGTGCTGGTTCATTGCTTTGTGGGAAGATCCAGAAGGTTTTGTCTCCCTGTCTACATTATTCCTGTTTCAGCTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005488 GO:0005515 GO:0005516 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008138 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04360 ko04810 map04360 map04810

Pfam Domains

Protein Families

DSPc

Protein Analysis

120

Amino Acids

13.69

Weight (kDa)

4.82

Isoelectric Point (pI)

82.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DSPc	PF00782	71 - 110	2.3e-07	Dual specificity phosphatase, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06110 AT3G06110 AT3G06110 AT3G23610 AT3G23610 AT3G23610 AT3G23610 AT3G23610 AT3G23610
fragaria_vesca	FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14580 FvH4_4g14580 FvH4_4g14700
malus_domestica	MD16G1184700.v1.1
prunus_persica	Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1
pyrus_communis	pycom13g15890 pycom16g15510
rosa_chinensis	RchiOBHm_Chr4g0396121 RchiOBHm_Chr4g0418191 RchiOBHm_Chr4g0418241 RchiOBHm_Chr4g0418281 RchiOBHm_Chr7g0218781
rosa_laevigata	RLG00000007880 RLG00000007884 RLG00000009570
rosa_multiflora	Rmu_co8157318.1_g000001 Rmu_sc0000032.1_g000004 Rmu_sc0000032.1_g000006 Rmu_sc0000408.1_g000002 Rmu_sc0006325.1_g000026 Rmu_sc0009634.1_g000005
rosa_roxburghii	Rroxscaffold_5G00340920 Rroxscaffold_5G00361410 Rroxscaffold_5G00361430 Rroxscaffold_5G00361460
rosa_rugosa	Rorug01G0235100 Rorug03G0352200.1 Rorug04G0150700 Rorug04G0151000 Rorug04G0151300 Rorug04G0151700 Rorug04G0151800 Rorug07G0049500
rosa_samantha	Rh2BG097600 Rh2CG099500 Rh2DG096900 Rh4AG213100 Rh4AG213300 Rh4BG064600 Rh4BG217300 Rh4BG217600 Rh4BG217700 Rh4CG071200 Rh4CG224400 Rh4CG224700 Rh4CG225000 Rh4DG061500 Rh4DG211300 Rh4DG211500 Rh4DG211900 Rh5AG356200 Rh6DG255000 Rh7AG321200 Rh7CG337700 Rh7DG282300
rosa_wichuraiana	Rw4G018090 Rw4G018120 Rw6G006740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	336
AclWI	GGATC	1 cut(s)	306
AgsI	TTSAA	3 cut(s)	58, 101, 163
AluBI	AGCT	5 cut(s)	35, 53, 131, 266, 356
AluI	AGCT	5 cut(s)	35, 53, 131, 266, 356
Alw26I	GTCTC	2 cut(s)	113, 332
AlwI	GGATC	1 cut(s)	306
ApeKI	GCWGC	2 cut(s)	35, 131
AxyI	CCTNAGG	1 cut(s)	23
BbvI	GCAGC	2 cut(s)	22, 118
BcoDI	GTCTC	2 cut(s)	113, 332
BglII	AGATCT	1 cut(s)	272
BisI	GCNGC	2 cut(s)	36, 132
BlsI	GCNGC	2 cut(s)	37, 133
BmsI	GCATC	1 cut(s)	56
Bpu10I	CCTNAGC	1 cut(s)	6
BsaJI	CCNNGG	1 cut(s)	183
Bse21I	CCTNAGG	1 cut(s)	23
Bse3DI	GCAATG	2 cut(s)	201, 295
BseDI	CCNNGG	1 cut(s)	183
BseGI	GGATG	1 cut(s)	71
BseMI	GCAATG	2 cut(s)	201, 295
BseMII	CTCAG	1 cut(s)	20
BseXI	GCAGC	2 cut(s)	22, 118
BsmAI	GTCTC	2 cut(s)	113, 332
Bsp143I	GATC	2 cut(s)	272, 311
BspCNI	CTCAG	1 cut(s)	19
BspPI	GGATC	1 cut(s)	306
BsrDI	GCAATG	2 cut(s)	201, 295
BssECI	CCNNGG	1 cut(s)	183
BssMI	GATC	2 cut(s)	272, 311
Bst4CI	ACNGT	1 cut(s)	184
Bst6I	CTCTTC	2 cut(s)	96, 116
BstC8I	GCNNGC	1 cut(s)	51
BstDEI	CTNAG	2 cut(s)	6, 23
BstDSI	CCRYGG	1 cut(s)	183
BstF5I	GGATG	1 cut(s)	71
BstKTI	GATC	2 cut(s)	275, 314
BstMAI	GTCTC	2 cut(s)	113, 332
BstMBI	GATC	2 cut(s)	272, 311
BstV1I	GCAGC	2 cut(s)	22, 118
BstX2I	RGATCY	2 cut(s)	272, 311
BstYI	RGATCY	2 cut(s)	272, 311
Bsu36I	CCTNAGG	1 cut(s)	23
BtgI	CCRYGG	1 cut(s)	183
BtsCI	GGATG	1 cut(s)	71
BtsI	GCAGTG	1 cut(s)	289
BtsIMutI	CAGTG	1 cut(s)	289
Cac8I	GCNNGC	1 cut(s)	51
CviJI	RGCY	6 cut(s)	5, 35, 53, 131, 266, 356
CviKI_1	RGCY	6 cut(s)	5, 35, 53, 131, 266, 356
DdeI	CTNAG	2 cut(s)	6, 23
DpnI	GATC	2 cut(s)	274, 313
DpnII	GATC	2 cut(s)	272, 311
Eam1104I	CTCTTC	2 cut(s)	96, 116
EarI	CTCTTC	2 cut(s)	96, 116
Eco81I	CCTNAGG	1 cut(s)	23
FaiI	YATR	2 cut(s)	208, 228
FblI	GTMKAC	1 cut(s)	336
Fnu4HI	GCNGC	2 cut(s)	36, 132
FokI	GGATG	1 cut(s)	78
Fsp4HI	GCNGC	2 cut(s)	36, 132
GluI	GCNGC	2 cut(s)	36, 132
HindIII	AAGCTT	1 cut(s)	51
HinfI	GANTC	1 cut(s)	106
Hpy166II	GTNNAC	1 cut(s)	337
Hpy188III	TCNNGA	2 cut(s)	74, 315
Hpy8I	GTNNAC	1 cut(s)	337
HpyAV	CCTTC	1 cut(s)	312
HpyCH4III	ACNGT	1 cut(s)	184
HpyCH4V	TGCA	4 cut(s)	49, 134, 194, 206
HpyF3I	CTNAG	2 cut(s)	6, 23
Kzo9I	GATC	2 cut(s)	272, 311
LpnPI	CCDG	8 cut(s)	103, 107, 142, 216, 261, 275, 328, 345
Lsp1109I	GCAGC	2 cut(s)	22, 118
LweI	GCATC	1 cut(s)	56
MalI	GATC	2 cut(s)	274, 313
MboI	GATC	2 cut(s)	272, 311
MboII	GAAGA	4 cut(s)	103, 113, 158, 321
MflI	RGATCY	2 cut(s)	272, 311
MluCI	AATT	1 cut(s)	41
MlyI	GAGTC	1 cut(s)	115
MnlI	CCTC	5 cut(s)	55, 70, 136, 210, 253
MslI	CAYNNNNRTG	1 cut(s)	237
NdeII	GATC	2 cut(s)	272, 311
PkrI	GCNGC	2 cut(s)	37, 133
PleI	GAGTC	1 cut(s)	114
PpsI	GAGTC	1 cut(s)	114
PsuI	RGATCY	2 cut(s)	272, 311
RseI	CAYNNNNRTG	1 cut(s)	237
SatI	GCNGC	2 cut(s)	36, 132
Sau3AI	GATC	2 cut(s)	272, 311
SchI	GAGTC	1 cut(s)	115
SetI	ASST	9 cut(s)	12, 24, 37, 55, 133, 161, 268, 323, 358
SfaNI	GCATC	1 cut(s)	56
SmiMI	CAYNNNNRTG	1 cut(s)	237
Sse9I	AATT	1 cut(s)	41
TaaI	ACNGT	1 cut(s)	184
TaqI	TCGA	1 cut(s)	249
TasI	AATT	1 cut(s)	41
TscAI	CASTG	1 cut(s)	289
TseI	GCWGC	2 cut(s)	35, 131
TspDTI	ATGAA	1 cut(s)	284
TspRI	CASTG	1 cut(s)	289
XmiI	GTMKAC	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.