Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000627

Physical Location & Seq

Genomic Coordinates Reverse (-)

37024572 .. 37025090

Gene Structure 519 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19585

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGTGCATCCTCTGTGGGGAATTGATGATGATGATATTCCATGCCAAATTGAAGAGGGCCTCTTCTTGGGTTCTGTTGGAGCTGCAAAAAACTGGAAGAAGCTGAAGGACTTAAATGTCACGCACATGCTGACCGTGGCCAATTCTTTGCCACCTAAATATCCAAACCATTTTGTGTATAAGGTTTTGAATGTCGAAGACAGAATAACCACAGACCTGCGACAACACTTTAATGAGTGTTTCAATTATATCGAAGAAGCTAAAACATCAGGGGGTGGTGTGTTGGTTCATAGCTTTGCAGGAAGCTCGAGAAGTGCGACTATTGTATTATCTTATTTGATGAAGAAGCATCGTATGAGTCTATATCAAGCTTTTGAACATGTGAAGAGAGAGAGAGACCAGAGGCAAAACCTAATGTTGGATTTATTTTACAACTGTTGCGGAACCTTGAAAAAAGGTAGTGTTGGGCACATCCGACAAACCCATAGACCACGCTTGGCAGATCAGGTTCGATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005488 GO:0005515 GO:0005516 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008138 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04360 ko04810 map04360 map04810

Pfam Domains

Protein Families

DSPc

Protein Analysis

172

Amino Acids

19.76

Weight (kDa)

9.06

Isoelectric Point (pI)

35.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DSPc	PF00782	21 - 134	2.5e-24	Dual specificity phosphatase, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06110 AT3G06110 AT3G06110 AT3G23610 AT3G23610 AT3G23610 AT3G23610 AT3G23610 AT3G23610
fragaria_vesca	FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14580 FvH4_4g14580 FvH4_4g14700
malus_domestica	MD16G1184700.v1.1
prunus_persica	Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1
pyrus_communis	pycom13g15890 pycom16g15510
rosa_chinensis	RchiOBHm_Chr4g0396121 RchiOBHm_Chr4g0418191 RchiOBHm_Chr4g0418241 RchiOBHm_Chr4g0418281 RchiOBHm_Chr7g0218781
rosa_laevigata	RLG00000007880 RLG00000007884 RLG00000009570
rosa_multiflora	Rmu_co8157318.1_g000001 Rmu_sc0000032.1_g000004 Rmu_sc0000032.1_g000006 Rmu_sc0000408.1_g000002 Rmu_sc0006325.1_g000026 Rmu_sc0009634.1_g000005
rosa_roxburghii	Rroxscaffold_5G00340920 Rroxscaffold_5G00361410 Rroxscaffold_5G00361430 Rroxscaffold_5G00361460
rosa_rugosa	Rorug01G0235100 Rorug03G0352200.1 Rorug04G0150700 Rorug04G0151000 Rorug04G0151300 Rorug04G0151700 Rorug04G0151800 Rorug07G0049500
rosa_samantha	Rh2BG097600 Rh2CG099500 Rh2DG096900 Rh4AG213100 Rh4AG213300 Rh4BG064600 Rh4BG217300 Rh4BG217600 Rh4BG217700 Rh4CG071200 Rh4CG224400 Rh4CG224700 Rh4CG225000 Rh4DG061500 Rh4DG211300 Rh4DG211500 Rh4DG211900 Rh5AG356200 Rh6DG255000 Rh7AG321200 Rh7CG337700 Rh7DG282300
rosa_wichuraiana	Rw4G018090 Rw4G018120 Rw6G006740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	116
Acc36I	ACCTGC	1 cut(s)	225
AciI	CCGC	1 cut(s)	441
AcoI	YGGCCR	1 cut(s)	138
AcuI	CTGAAG	1 cut(s)	125
AfiI	CCNNNNNNNGG	3 cut(s)	17, 67, 418
AflIII	ACRYGT	1 cut(s)	379
AgsI	TTSAA	5 cut(s)	53, 190, 244, 377, 451
AluBI	AGCT	6 cut(s)	83, 103, 260, 294, 306, 371
AluI	AGCT	6 cut(s)	83, 103, 260, 294, 306, 371
Alw26I	GTCTC	1 cut(s)	390
Ama87I	CYCGRG	1 cut(s)	307
AoxI	GGCC	2 cut(s)	58, 138
ApeKI	GCWGC	1 cut(s)	83
AspS9I	GGNCC	1 cut(s)	58
AvaI	CYCGRG	1 cut(s)	307
BaeGI	GKGCMC	1 cut(s)	471
BalI	TGGCCA	1 cut(s)	140
BbsI	GAAGAC	1 cut(s)	204
BbvI	GCAGC	1 cut(s)	70
BcgI	CGANNNNNNTGC	2 cut(s)	288, 322
BcoDI	GTCTC	1 cut(s)	390
BfuAI	ACCTGC	1 cut(s)	225
BisI	GCNGC	1 cut(s)	84
BlsI	GCNGC	1 cut(s)	85
BmeT110I	CYCGRG	1 cut(s)	307
BmgT120I	GGNCC	1 cut(s)	58
BmiI	GGNNCC	1 cut(s)	445
BmsI	GCATC	2 cut(s)	16, 358
BpiI	GAAGAC	1 cut(s)	204
BsaI	GGTCTC	1 cut(s)	390
BsaJI	CCNNGG	1 cut(s)	135
Bsc4I	CCNNNNNNNGG	3 cut(s)	17, 67, 418
Bse1I	ACTGG	1 cut(s)	98
BseDI	CCNNGG	1 cut(s)	135
BseGI	GGATG	2 cut(s)	7, 471
BseLI	CCNNNNNNNGG	3 cut(s)	17, 67, 418
BseNI	ACTGG	1 cut(s)	98
BseSI	GKGCMC	1 cut(s)	471
BseXI	GCAGC	1 cut(s)	70
BshFI	GGCC	2 cut(s)	60, 140
BsiHKCI	CYCGRG	1 cut(s)	307
BslI	CCNNNNNNNGG	3 cut(s)	17, 67, 418
BsmAI	GTCTC	1 cut(s)	390
BsnI	GGCC	2 cut(s)	60, 140
Bso31I	GGTCTC	1 cut(s)	390
BsoBI	CYCGRG	1 cut(s)	307
Bsp1286I	GDGCHC	1 cut(s)	471
Bsp143I	GATC	1 cut(s)	502
BspACI	CCGC	1 cut(s)	441
BspANI	GGCC	2 cut(s)	60, 140
BspLI	GGNNCC	1 cut(s)	445
BspMI	ACCTGC	1 cut(s)	225
BspTNI	GGTCTC	1 cut(s)	390
BsrI	ACTGG	1 cut(s)	98
BssECI	CCNNGG	1 cut(s)	135
BssMI	GATC	1 cut(s)	502
Bst4CI	ACNGT	2 cut(s)	136, 437
Bst6I	CTCTTC	3 cut(s)	48, 68, 380
BstDSI	CCRYGG	1 cut(s)	135
BstF5I	GGATG	2 cut(s)	7, 471
BstKTI	GATC	1 cut(s)	505
BstMAI	GTCTC	1 cut(s)	390
BstMBI	GATC	1 cut(s)	502
BstNSI	RCATGY	2 cut(s)	130, 383
BstSLI	GKGCMC	1 cut(s)	471
BstV1I	GCAGC	1 cut(s)	70
BstV2I	GAAGAC	1 cut(s)	204
BsuRI	GGCC	2 cut(s)	60, 140
BtgI	CCRYGG	1 cut(s)	135
BtsCI	GGATG	2 cut(s)	7, 471
BveI	ACCTGC	1 cut(s)	225
Cfr13I	GGNCC	1 cut(s)	58
CviAII	CATG	3 cut(s)	42, 127, 380
CviJI	RGCY	8 cut(s)	60, 83, 103, 140, 260, 294, 306, 371
CviKI_1	RGCY	8 cut(s)	60, 83, 103, 140, 260, 294, 306, 371
DpnI	GATC	1 cut(s)	504
DpnII	GATC	1 cut(s)	502
DrdI	GACNNNNNNGTC	1 cut(s)	116
DseDI	GACNNNNNNGTC	1 cut(s)	116
EaeI	YGGCCR	1 cut(s)	138
Eam1104I	CTCTTC	3 cut(s)	48, 68, 380
EarI	CTCTTC	3 cut(s)	48, 68, 380
Eco31I	GGTCTC	1 cut(s)	390
Eco57I	CTGAAG	1 cut(s)	125
Eco88I	CYCGRG	1 cut(s)	307
EcoO109I	RGGNCCY	1 cut(s)	58
FaeI	CATG	3 cut(s)	45, 130, 383
FaiI	YATR	9 cut(s)	43, 128, 180, 249, 291, 356, 364, 381, 486
FatI	CATG	3 cut(s)	41, 126, 379
Fnu4HI	GCNGC	1 cut(s)	84
FokI	GGATG	1 cut(s)	458
Fsp4HI	GCNGC	1 cut(s)	84
GluI	GCNGC	1 cut(s)	84
HaeIII	GGCC	2 cut(s)	60, 140
Hin1II	CATG	3 cut(s)	45, 130, 383
HindIII	AAGCTT	1 cut(s)	369
HinfI	GANTC	1 cut(s)	358
Hpy188I	TCNGA	1 cut(s)	476
Hpy188III	TCNNGA	1 cut(s)	309
HpyAV	CCTTC	1 cut(s)	100
HpyCH4III	ACNGT	2 cut(s)	136, 437
HpyCH4V	TGCA	3 cut(s)	7, 86, 299
Hsp92II	CATG	3 cut(s)	45, 130, 383
Kzo9I	GATC	1 cut(s)	502
LmnI	GCTCC	1 cut(s)	80
LpnPI	CCDG	6 cut(s)	79, 230, 255, 285, 413, 491
Lsp1109I	GCAGC	1 cut(s)	70
LweI	GCATC	2 cut(s)	16, 358
MaeIII	GTNAC	1 cut(s)	118
MalI	GATC	1 cut(s)	504
MboI	GATC	1 cut(s)	502
MboII	GAAGA	7 cut(s)	55, 65, 109, 209, 266, 355, 397
MhlI	GDGCHC	1 cut(s)	471
MlsI	TGGCCA	1 cut(s)	140
MluCI	AATT	4 cut(s)	21, 48, 142, 244
MluNI	TGGCCA	1 cut(s)	140
MlyI	GAGTC	1 cut(s)	367
MmeI	TCCRAC	3 cut(s)	58, 399, 499
MnlI	CCTC	4 cut(s)	21, 49, 71, 396
Mox20I	TGGCCA	1 cut(s)	140
MscI	TGGCCA	1 cut(s)	140
MseI	TTAA	2 cut(s)	113, 231
MslI	CAYNNNNRTG	2 cut(s)	125, 231
Msp20I	TGGCCA	1 cut(s)	140
NdeII	GATC	1 cut(s)	502
NlaIII	CATG	3 cut(s)	45, 130, 383
NlaIV	GGNNCC	1 cut(s)	445
NmuCI	GTSAC	1 cut(s)	118
NspI	RCATGY	2 cut(s)	130, 383
PaeR7I	CTCGAG	1 cut(s)	307
PciI	ACATGT	1 cut(s)	379
PcsI	WCGNNNNNNNCGW	1 cut(s)	314
PkrI	GCNGC	1 cut(s)	85
PleI	GAGTC	1 cut(s)	366
PpsI	GAGTC	1 cut(s)	366
PscI	ACATGT	1 cut(s)	379
PspN4I	GGNNCC	1 cut(s)	445
PspPI	GGNCC	1 cut(s)	58
RseI	CAYNNNNRTG	2 cut(s)	125, 231
SaqAI	TTAA	2 cut(s)	113, 231
SatI	GCNGC	1 cut(s)	84
Sau3AI	GATC	1 cut(s)	502
Sau96I	GGNCC	1 cut(s)	58
SchI	GAGTC	1 cut(s)	367
SduI	GDGCHC	1 cut(s)	471
SfaNI	GCATC	2 cut(s)	16, 358
Sfr274I	CTCGAG	1 cut(s)	307
SlaI	CTCGAG	1 cut(s)	307
SmiMI	CAYNNNNRTG	2 cut(s)	125, 231
SmlI	CTYRAG	1 cut(s)	307
SmoI	CTYRAG	1 cut(s)	307
Sse9I	AATT	4 cut(s)	21, 48, 142, 244
SsiI	CCGC	1 cut(s)	441
TaaI	ACNGT	2 cut(s)	136, 437
TaqI	TCGA	4 cut(s)	195, 252, 308, 511
TasI	AATT	4 cut(s)	21, 48, 142, 244
Tru1I	TTAA	2 cut(s)	113, 231
Tru9I	TTAA	2 cut(s)	113, 231
TseFI	GTSAC	1 cut(s)	118
TseI	GCWGC	1 cut(s)	83
Tsp45I	GTSAC	1 cut(s)	118
TspDTI	ATGAA	2 cut(s)	278, 356
XceI	RCATGY	2 cut(s)	130, 383
XhoI	CTCGAG	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.