Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000627

Physical Location & Seq

Genomic Coordinates Forward (+)

26540993 .. 26541350

Gene Structure 358 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0151700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGAATAGACAGTGGATTCACTGCGATCGATGTAGTGAGGAGTACAAAATTGGGGTCAAATCATTCATTGAATTTGCTAAACAGAATGTGAATGAGGAGAATGAGACTGTATGTCCCTGCTCTAGTTGTGGTTATTCAAAGTTGAAAACTATTGATGTAGTTCACATCCATTTACTGCAACATGGGTTGTCGGTAATAATATTTGAAACATACTTTAGCGTATTGAAGGGGGTGAAGACACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005488 GO:0005515 GO:0005516 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008138 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04360 ko04810 map04360 map04810

Pfam Domains

Protein Families

DSPc

Protein Analysis

81

Amino Acids

9.34

Weight (kDa)

6.88

Isoelectric Point (pI)

44.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transpos_assoc	PF13963	3 - 64	6.1e-15	Transposase-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06110 AT3G06110 AT3G06110 AT3G23610 AT3G23610 AT3G23610 AT3G23610 AT3G23610 AT3G23610
fragaria_vesca	FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14580 FvH4_4g14580 FvH4_4g14700
malus_domestica	MD16G1184700.v1.1
prunus_persica	Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1
pyrus_communis	pycom13g15890 pycom16g15510
rosa_chinensis	RchiOBHm_Chr4g0396121 RchiOBHm_Chr4g0418191 RchiOBHm_Chr4g0418241 RchiOBHm_Chr4g0418281 RchiOBHm_Chr7g0218781
rosa_laevigata	RLG00000007880 RLG00000007884 RLG00000009570
rosa_multiflora	Rmu_co8157318.1_g000001 Rmu_sc0000032.1_g000004 Rmu_sc0000032.1_g000006 Rmu_sc0000408.1_g000002 Rmu_sc0006325.1_g000026 Rmu_sc0009634.1_g000005
rosa_roxburghii	Rroxscaffold_5G00340920 Rroxscaffold_5G00361410 Rroxscaffold_5G00361430 Rroxscaffold_5G00361460
rosa_rugosa	Rorug01G0235100 Rorug03G0352200.1 Rorug04G0150700 Rorug04G0151000 Rorug04G0151300 Rorug04G0151700 Rorug04G0151800 Rorug07G0049500
rosa_samantha	Rh2BG097600 Rh2CG099500 Rh2DG096900 Rh4AG213100 Rh4AG213300 Rh4BG064600 Rh4BG217300 Rh4BG217600 Rh4BG217700 Rh4CG071200 Rh4CG224400 Rh4CG224700 Rh4CG225000 Rh4DG061500 Rh4DG211300 Rh4DG211500 Rh4DG211900 Rh5AG356200 Rh6DG255000 Rh7AG321200 Rh7CG337700 Rh7DG282300
rosa_wichuraiana	Rw4G018090 Rw4G018120 Rw6G006740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	71
AfaI	GTAC	1 cut(s)	44
AgsI	TTSAA	5 cut(s)	71, 138, 145, 206, 226
AhdI	GACNNNNNGTC	1 cut(s)	111
Alw26I	GTCTC	1 cut(s)	98
ApoI	RAATTY	1 cut(s)	71
ArsI	GACNNNNNNTTYG	2 cut(s)	39, 71
AsuHPI	GGTGA	1 cut(s)	244
BbsI	GAAGAC	1 cut(s)	242
BcoDI	GTCTC	1 cut(s)	98
BfaI	CTAG	2 cut(s)	123, 244
BmeRI	GACNNNNNGTC	1 cut(s)	111
BpiI	GAAGAC	1 cut(s)	242
Bsa29I	ATCGAT	1 cut(s)	28
BseCI	ATCGAT	1 cut(s)	28
BseGI	GGATG	1 cut(s)	165
BseRI	GAGGAG	2 cut(s)	53, 110
Bsh1285I	CGRYCG	1 cut(s)	28
BshVI	ATCGAT	1 cut(s)	28
BsiEI	CGRYCG	1 cut(s)	28
BslFI	GGGAC	1 cut(s)	99
BsmAI	GTCTC	1 cut(s)	98
BsmFI	GGGAC	1 cut(s)	99
Bsp143I	GATC	1 cut(s)	25
BspDI	ATCGAT	1 cut(s)	28
BssMI	GATC	1 cut(s)	25
Bst4CI	ACNGT	2 cut(s)	12, 109
BstF5I	GGATG	1 cut(s)	165
BstKTI	GATC	1 cut(s)	28
BstMAI	GTCTC	1 cut(s)	98
BstMBI	GATC	1 cut(s)	25
BstMCI	CGRYCG	1 cut(s)	28
BstV2I	GAAGAC	1 cut(s)	242
Bsu15I	ATCGAT	1 cut(s)	28
BsuTUI	ATCGAT	1 cut(s)	28
BtsCI	GGATG	1 cut(s)	165
BtsI	GCAGTG	1 cut(s)	19
BtsIMutI	CAGTG	2 cut(s)	17, 19
ClaI	ATCGAT	1 cut(s)	28
Csp6I	GTAC	1 cut(s)	43
CviAII	CATG	1 cut(s)	182
CviQI	GTAC	1 cut(s)	43
DpnI	GATC	1 cut(s)	27
DpnII	GATC	1 cut(s)	25
DriI	GACNNNNNGTC	1 cut(s)	111
Eam1105I	GACNNNNNGTC	1 cut(s)	111
FaeI	CATG	1 cut(s)	185
FaiI	YATR	3 cut(s)	112, 183, 211
FaqI	GGGAC	1 cut(s)	99
FatI	CATG	1 cut(s)	181
FokI	GGATG	1 cut(s)	152
FspBI	CTAG	2 cut(s)	123, 244
Hin1II	CATG	1 cut(s)	185
HinfI	GANTC	1 cut(s)	16
HphI	GGTGA	1 cut(s)	244
Hpy166II	GTNNAC	1 cut(s)	163
Hpy8I	GTNNAC	1 cut(s)	163
HpyAV	CCTTC	1 cut(s)	220
HpyCH4III	ACNGT	2 cut(s)	12, 109
HpyCH4V	TGCA	1 cut(s)	178
Hsp92II	CATG	1 cut(s)	185
Kzo9I	GATC	1 cut(s)	25
LpnPI	CCDG	1 cut(s)	130
MaeI	CTAG	2 cut(s)	123, 244
MalI	GATC	1 cut(s)	27
MboI	GATC	1 cut(s)	25
MluCI	AATT	2 cut(s)	48, 71
MnlI	CCTC	2 cut(s)	31, 88
NdeII	GATC	1 cut(s)	25
NlaIII	CATG	1 cut(s)	185
PfeI	GAWTC	1 cut(s)	16
Ple19I	CGATCG	1 cut(s)	28
PvuI	CGATCG	1 cut(s)	28
RsaI	GTAC	1 cut(s)	44
RsaNI	GTAC	1 cut(s)	43
Sau3AI	GATC	1 cut(s)	25
SgeI	CNNG	3 cut(s)	129, 135, 194
Sse9I	AATT	2 cut(s)	48, 71
SspI	AATATT	1 cut(s)	201
SspMI	CTAG	2 cut(s)	123, 244
TaaI	ACNGT	2 cut(s)	12, 109
TaqI	TCGA	1 cut(s)	28
TasI	AATT	2 cut(s)	48, 71
TatI	WGTACW	1 cut(s)	42
TfiI	GAWTC	1 cut(s)	16
TscAI	CASTG	2 cut(s)	17, 26
TspDTI	ATGAA	2 cut(s)	17, 55
TspRI	CASTG	2 cut(s)	17, 26
XapI	RAATTY	1 cut(s)	71
XspI	CTAG	2 cut(s)	123, 244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.