Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009634.1

Orthogroup ID

OG0000627

Physical Location & Seq

Genomic Coordinates Reverse (-)

23342 .. 23878

Gene Structure 537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009634.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

atggggcatctgaggggaactgattcacttgtgaaccaagccgcaccagcattgcaatctatgaatgagagactgtgtagagaggacaatattccttgccaaattgaagagggcctcttcttaggttctcttggagctgcaaataacaaggagacgctggagaacttaaatgtcacgcacattttgaccgtggccgattctttgccacctaaatatccaaacgatttcgtgtacagggttttgaatgtcgaagacagaagaaccacagacctgcaacaacagtttgatatcgaagaagctaaaacatctgggggtggtgtgttggttcattgcttttcaggaaaatcgagaagtgcgactactgtattatcttatctgatgaagaagcatcgtatgagtctatctcaagctcttgaacatgtgaaggaaaaaagaccagaggcagctcctaatgctggttttattaaacaactgaagaaccttgaagtagtgttgggcatatccgcgattgaactgccaaaaccgacaaacccatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005488 GO:0005515 GO:0005516 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008138 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04360 ko04810 map04360 map04810

Pfam Domains

Protein Families

DSPc

Protein Analysis

178

Amino Acids

19.64

Weight (kDa)

6.52

Isoelectric Point (pI)

56.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06110 AT3G06110 AT3G06110 AT3G23610 AT3G23610 AT3G23610 AT3G23610 AT3G23610 AT3G23610
fragaria_vesca	FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14580 FvH4_4g14580 FvH4_4g14700
malus_domestica	MD16G1184700.v1.1
prunus_persica	Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1
pyrus_communis	pycom13g15890 pycom16g15510
rosa_chinensis	RchiOBHm_Chr4g0396121 RchiOBHm_Chr4g0418191 RchiOBHm_Chr4g0418241 RchiOBHm_Chr4g0418281 RchiOBHm_Chr7g0218781
rosa_laevigata	RLG00000007880 RLG00000007884 RLG00000009570
rosa_multiflora	Rmu_co8157318.1_g000001 Rmu_sc0000032.1_g000004 Rmu_sc0000032.1_g000006 Rmu_sc0000408.1_g000002 Rmu_sc0006325.1_g000026 Rmu_sc0009634.1_g000005
rosa_roxburghii	Rroxscaffold_5G00340920 Rroxscaffold_5G00361410 Rroxscaffold_5G00361430 Rroxscaffold_5G00361460
rosa_rugosa	Rorug01G0235100 Rorug03G0352200.1 Rorug04G0150700 Rorug04G0151000 Rorug04G0151300 Rorug04G0151700 Rorug04G0151800 Rorug07G0049500
rosa_samantha	Rh2BG097600 Rh2CG099500 Rh2DG096900 Rh4AG213100 Rh4AG213300 Rh4BG064600 Rh4BG217300 Rh4BG217600 Rh4BG217700 Rh4CG071200 Rh4CG224400 Rh4CG224700 Rh4CG225000 Rh4DG061500 Rh4DG211300 Rh4DG211500 Rh4DG211900 Rh5AG356200 Rh6DG255000 Rh7AG321200 Rh7CG337700 Rh7DG282300
rosa_wichuraiana	Rw4G018090 Rw4G018120 Rw6G006740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	279
AccII	CGCG	1 cut(s)	506
AciI	CCGC	2 cut(s)	42, 504
AcoI	YGGCCR	1 cut(s)	192
AcuI	CTGAAG	1 cut(s)	494
AfaI	GTAC	1 cut(s)	233
AfiI	CCNNNNNNNGG	1 cut(s)	455
AflIII	ACRYGT	1 cut(s)	418
AgsI	TTSAA	5 cut(s)	107, 244, 416, 485, 512
AluBI	AGCT	4 cut(s)	137, 299, 410, 446
AluI	AGCT	4 cut(s)	137, 299, 410, 446
Alw26I	GTCTC	2 cut(s)	64, 146
AoxI	GGCC	2 cut(s)	112, 192
ApeKI	GCWGC	2 cut(s)	137, 443
Asp700I	GAANNNNTTC	1 cut(s)	22
AspS9I	GGNCC	1 cut(s)	112
BarI	GAAGNNNNNNTAC	2 cut(s)	343, 375
BbsI	GAAGAC	1 cut(s)	258
BbvI	GCAGC	2 cut(s)	124, 455
BcgI	CGANNNNNNTGC	2 cut(s)	496, 530
BcoDI	GTCTC	2 cut(s)	64, 146
BfuAI	ACCTGC	1 cut(s)	279
BisI	GCNGC	3 cut(s)	42, 138, 444
BlsI	GCNGC	3 cut(s)	43, 139, 445
BmgT120I	GGNCC	1 cut(s)	112
BmsI	GCATC	2 cut(s)	16, 397
BpiI	GAAGAC	1 cut(s)	258
BplI	GAGNNNNNCTC	2 cut(s)	388, 420
BpmI	CTGGAG	1 cut(s)	179
BpuEI	CTTGAG	1 cut(s)	390
BsaJI	CCNNGG	1 cut(s)	189
Bsc4I	CCNNNNNNNGG	1 cut(s)	455
Bse3DI	GCAATG	2 cut(s)	50, 328
BseDI	CCNNGG	1 cut(s)	189
BseLI	CCNNNNNNNGG	1 cut(s)	455
BseMI	GCAATG	2 cut(s)	50, 328
BseXI	GCAGC	2 cut(s)	124, 455
Bsh1236I	CGCG	1 cut(s)	506
BshFI	GGCC	2 cut(s)	114, 194
BslI	CCNNNNNNNGG	1 cut(s)	455
BsmAI	GTCTC	2 cut(s)	64, 146
BsmBI	CGTCTC	1 cut(s)	146
BsnI	GGCC	2 cut(s)	114, 194
Bsp1407I	TGTACA	1 cut(s)	231
BspACI	CCGC	2 cut(s)	42, 504
BspANI	GGCC	2 cut(s)	114, 194
BspFNI	CGCG	1 cut(s)	506
BspMI	ACCTGC	1 cut(s)	279
BsrDI	GCAATG	2 cut(s)	50, 328
BsrGI	TGTACA	1 cut(s)	231
BssECI	CCNNGG	1 cut(s)	189
Bst4CI	ACNGT	4 cut(s)	75, 190, 282, 364
Bst6I	CTCTTC	2 cut(s)	102, 122
BstAUI	TGTACA	1 cut(s)	231
BstDEI	CTNAG	2 cut(s)	11, 121
BstDSI	CCRYGG	1 cut(s)	189
BstFNI	CGCG	1 cut(s)	506
BstMAI	GTCTC	2 cut(s)	64, 146
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 452
BstNSI	RCATGY	1 cut(s)	422
BstUI	CGCG	1 cut(s)	506
BstV1I	GCAGC	2 cut(s)	124, 455
BstV2I	GAAGAC	1 cut(s)	258
BsuRI	GGCC	2 cut(s)	114, 194
BtgI	CCRYGG	1 cut(s)	189
BveI	ACCTGC	1 cut(s)	279
Cfr13I	GGNCC	1 cut(s)	112
CseI	GACGC	1 cut(s)	163
Csp6I	GTAC	1 cut(s)	232
CviAII	CATG	1 cut(s)	419
CviJI	RGCY	7 cut(s)	41, 114, 137, 194, 299, 410, 446
CviKI_1	RGCY	7 cut(s)	41, 114, 137, 194, 299, 410, 446
CviQI	GTAC	1 cut(s)	232
DdeI	CTNAG	2 cut(s)	11, 121
EaeI	YGGCCR	1 cut(s)	192
Eam1104I	CTCTTC	2 cut(s)	102, 122
EarI	CTCTTC	2 cut(s)	102, 122
Eco32I	GATATC	1 cut(s)	289
Eco57I	CTGAAG	1 cut(s)	494
EcoO109I	RGGNCCY	1 cut(s)	112
EcoRV	GATATC	1 cut(s)	289
Esp3I	CGTCTC	1 cut(s)	146
FaeI	CATG	1 cut(s)	422
FaiI	YATR	5 cut(s)	62, 395, 420, 500, 535
FatI	CATG	1 cut(s)	418
Fnu4HI	GCNGC	3 cut(s)	42, 138, 444
Fsp4HI	GCNGC	3 cut(s)	42, 138, 444
GluI	GCNGC	3 cut(s)	42, 138, 444
GsuI	CTGGAG	1 cut(s)	179
HaeIII	GGCC	2 cut(s)	114, 194
HgaI	GACGC	1 cut(s)	163
Hin1II	CATG	1 cut(s)	422
HinfI	GANTC	3 cut(s)	23, 197, 397
Hpy166II	GTNNAC	2 cut(s)	34, 232
Hpy188I	TCNGA	2 cut(s)	12, 378
Hpy188III	TCNNGA	3 cut(s)	339, 348, 413
Hpy8I	GTNNAC	2 cut(s)	34, 232
HpyAV	CCTTC	1 cut(s)	418
HpyCH4III	ACNGT	4 cut(s)	75, 190, 282, 364
HpyCH4V	TGCA	3 cut(s)	55, 140, 274
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 452
HpyF3I	CTNAG	2 cut(s)	11, 121
Hsp92II	CATG	1 cut(s)	422
LmnI	GCTCC	2 cut(s)	134, 451
LpnPI	CCDG	8 cut(s)	60, 143, 220, 284, 294, 324, 441, 450
Lsp1109I	GCAGC	2 cut(s)	124, 455
LweI	GCATC	2 cut(s)	16, 397
MaeIII	GTNAC	1 cut(s)	172
MboII	GAAGA	7 cut(s)	109, 119, 263, 270, 305, 394, 487
MluCI	AATT	1 cut(s)	102
MlyI	GAGTC	1 cut(s)	406
MnlI	CCTC	5 cut(s)	6, 76, 103, 125, 433
MroXI	GAANNNNTTC	1 cut(s)	22
MseI	TTAA	2 cut(s)	167, 465
MvnI	CGCG	1 cut(s)	506
MwoI	GCNNNNNNNGC	2 cut(s)	47, 452
NlaIII	CATG	1 cut(s)	422
NmuCI	GTSAC	1 cut(s)	172
NspI	RCATGY	1 cut(s)	422
PciI	ACATGT	1 cut(s)	418
PcsI	WCGNNNNNNNCGW	1 cut(s)	353
PdmI	GAANNNNTTC	1 cut(s)	22
PfeI	GAWTC	2 cut(s)	23, 197
PkrI	GCNGC	3 cut(s)	43, 139, 445
PleI	GAGTC	1 cut(s)	405
PpsI	GAGTC	1 cut(s)	405
PscI	ACATGT	1 cut(s)	418
PspPI	GGNCC	1 cut(s)	112
RsaI	GTAC	1 cut(s)	233
RsaNI	GTAC	1 cut(s)	232
SaqAI	TTAA	2 cut(s)	167, 465
SatI	GCNGC	3 cut(s)	42, 138, 444
Sau96I	GGNCC	1 cut(s)	112
SchI	GAGTC	1 cut(s)	406
SetI	ASST	8 cut(s)	127, 139, 211, 273, 301, 412, 448, 483
SfaNI	GCATC	2 cut(s)	16, 397
SmlI	CTYRAG	1 cut(s)	405
SmoI	CTYRAG	1 cut(s)	405
Sse9I	AATT	1 cut(s)	102
SsiI	CCGC	2 cut(s)	42, 504
SspI	AATATT	1 cut(s)	91
TaaI	ACNGT	4 cut(s)	75, 190, 282, 364
TaqI	TCGA	3 cut(s)	249, 291, 347
TasI	AATT	1 cut(s)	102
TatI	WGTACW	1 cut(s)	231
TauI	GCSGC	1 cut(s)	44
TfiI	GAWTC	2 cut(s)	23, 197
Tru1I	TTAA	2 cut(s)	167, 465
Tru9I	TTAA	2 cut(s)	167, 465
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	2 cut(s)	137, 443
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	3 cut(s)	77, 317, 395
XceI	RCATGY	1 cut(s)	422
XmnI	GAANNNNTTC	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.