Rh7DG282300

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000627
Physical Location & Seq
Forward (+)
30527473 .. 30533710
6238 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG282300.1

Sequence Viewer

Length: 726 bp
ATGAATGGGGGATACTATAAAGAGGACAATATCCCCTGCCAGATTGAAGAGGGTCTCTTCTTGGGTTCTTTTGGAGCTGCAAATGACGAGGAAGAACTGAACAGGTTGAACATTACTCACATTTTGACAGTGGGTAGTGCAATGCCTCCTGCATATCCAAATGATTTTGTCTATAAGGTTATACAAAAATCTGAGATAGAGGATGCAGAGGAATGCTTCAAACTTTTTTCTTTGGAAGAGGCGGCTAAATTTGACGAAGTGACCCTTGCCAATGTGAACAACTTCAAAAAGCGCTCAAAAAGCCAGTCACCTAATGCAATCCACAAAGAATATATAGTGCTTACAATTCTGGTGGCTACTGATGGAGAACAGAAGTTGCCCACCATCAGTGGCACTCATGACTTGAAGAAAGCATTACATAAACTTGGAGCCATTTCCTCGAACAAAATAATGGATGAGGAGGTTCTCAGCGACGATGCCGGCAAGCCCAATTTCTCGCTTGACCTCAAGCTGTTCGTCAGATTCACTATCTATAATGGTCAGCTAGTTGAGCTCTTCGAAGGTGCTGGAAATATTGAGATGGTTGAGGTGATATATGACAAGTCGACTGGGAGAAGCAGGGGATTCGGGTTTGTGACCATGTCGAGTGCTCAGGAAGTAGAAGCAGCTACTCGACAGTTCGATGGCTATATGAGTCACCAATTTGTGTCTATGATATGTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

241

Amino Acids

26.85

Weight (kDa)

4.85

Isoelectric Point (pI)

53.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1517 PF07466 62 - 156 1.4e-20 Protein of unknown function (DUF1517)
RRM_1 PF00076 181 - 232 2.9e-10 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 605
AciI CCGC 1 cut(s) 242
AcsI RAATTY 1 cut(s) 248
AfeI AGCGCT 1 cut(s) 293
AgsI TTSAA 5 cut(s) 47, 109, 220, 286, 406
AluBI AGCT 5 cut(s) 77, 511, 544, 553, 668
AluI AGCT 5 cut(s) 77, 511, 544, 553, 668
Alw21I GWGCWC 2 cut(s) 555, 652
Alw26I GTCTC 1 cut(s) 59
Aor51HI AGCGCT 1 cut(s) 293
ApeKI GCWGC 2 cut(s) 77, 665
ApoI RAATTY 1 cut(s) 248
ArsI GACNNNNNNTTYG 2 cut(s) 290, 322
Asp700I GAANNNNTTC 1 cut(s) 281
AspLEI GCGC 1 cut(s) 294
AsuHPI GGTGA 3 cut(s) 300, 601, 689
AsuII TTCGAA 1 cut(s) 558
BanII GRGCYC 1 cut(s) 555
Bbv12I GWGCWC 2 cut(s) 555, 652
BbvI GCAGC 2 cut(s) 64, 677
BccI CCATC 4 cut(s) 356, 392, 574, 677
BcgI CGANNNNNNTGC 2 cut(s) 607, 641
BciVI GTATCC 1 cut(s) 5
BcoDI GTCTC 1 cut(s) 59
BfaI CTAG 1 cut(s) 545
BfoI RGCGCY 1 cut(s) 295
BfuI GTATCC 1 cut(s) 5
BisI GCNGC 3 cut(s) 78, 243, 666
BlsI GCNGC 3 cut(s) 79, 244, 667
BmiI GGNNCC 1 cut(s) 430
BmrI ACTGGG 1 cut(s) 618
BmsI GCATC 2 cut(s) 193, 466
BmuI ACTGGG 1 cut(s) 618
Bpu10I CCTNAGC 1 cut(s) 651
Bpu14I TTCGAA 1 cut(s) 558
BpuEI CTTGAG 1 cut(s) 491
BsaI GGTCTC 1 cut(s) 59
Bse118I RCCGGY 1 cut(s) 479
Bse1I ACTGG 2 cut(s) 304, 613
Bse3DI GCAATG 1 cut(s) 147
BseGI GGATG 2 cut(s) 208, 460
BseMI GCAATG 1 cut(s) 147
BseMII CTCAG 3 cut(s) 183, 481, 665
BseNI ACTGG 2 cut(s) 304, 613
BseRI GAGGAG 1 cut(s) 473
BseXI GCAGC 2 cut(s) 64, 677
BsiHKAI GWGCWC 2 cut(s) 555, 652
BsiSI CCGG 1 cut(s) 480
BsmAI GTCTC 1 cut(s) 59
BsmI GAATGC 1 cut(s) 218
Bso31I GGTCTC 1 cut(s) 59
Bsp119I TTCGAA 1 cut(s) 558
Bsp1286I GDGCHC 2 cut(s) 555, 652
BspACI CCGC 1 cut(s) 242
BspCNI CTCAG 3 cut(s) 184, 480, 664
BspHI TCATGA 1 cut(s) 397
BspLI GGNNCC 1 cut(s) 430
BspQI GCTCTTC 1 cut(s) 560
BspT104I TTCGAA 1 cut(s) 558
BspTNI GGTCTC 1 cut(s) 59
BsrDI GCAATG 1 cut(s) 147
BsrFI RCCGGY 1 cut(s) 479
BsrI ACTGG 2 cut(s) 304, 613
BssAI RCCGGY 1 cut(s) 479
Bst4CI ACNGT 2 cut(s) 130, 678
Bst6I CTCTTC 4 cut(s) 42, 62, 231, 560
BstBI TTCGAA 1 cut(s) 558
BstC8I GCNNGC 2 cut(s) 481, 485
BstDEI CTNAG 3 cut(s) 192, 467, 651
BstF5I GGATG 2 cut(s) 208, 460
BstH2I RGCGCY 1 cut(s) 295
BstHHI GCGC 1 cut(s) 294
BstMAI GTCTC 1 cut(s) 59
BstMWI GCNNNNNNNGC 2 cut(s) 300, 550
BstV1I GCAGC 2 cut(s) 64, 677
BsuI GTATCC 1 cut(s) 5
BtsCI GGATG 2 cut(s) 208, 460
BtsIMutI CAGTG 2 cut(s) 135, 394
Cac8I GCNNGC 2 cut(s) 481, 485
CciI TCATGA 1 cut(s) 397
CfoI GCGC 1 cut(s) 294
Cfr10I RCCGGY 1 cut(s) 479
CspCI CAANNNNNGTGG 2 cut(s) 333, 368
CviAII CATG 2 cut(s) 398, 640
DdeI CTNAG 3 cut(s) 192, 467, 651
Eam1104I CTCTTC 4 cut(s) 42, 62, 231, 560
EarI CTCTTC 4 cut(s) 42, 62, 231, 560
Ecl136II GAGCTC 1 cut(s) 553
Eco24I GRGCYC 1 cut(s) 555
Eco31I GGTCTC 1 cut(s) 59
Eco47III AGCGCT 1 cut(s) 293
Eco53kI GAGCTC 1 cut(s) 553
EcoICRI GAGCTC 1 cut(s) 553
EcoT38I GRGCYC 1 cut(s) 555
FaeI CATG 2 cut(s) 401, 643
FalI AAGNNNNNCTT 2 cut(s) 249, 281
FatI CATG 2 cut(s) 397, 639
FblI GTMKAC 1 cut(s) 605
Fnu4HI GCNGC 3 cut(s) 78, 243, 666
FokI GGATG 2 cut(s) 215, 467
FriOI GRGCYC 1 cut(s) 555
Fsp4HI GCNGC 3 cut(s) 78, 243, 666
FspBI CTAG 1 cut(s) 545
GlaI GCGC 1 cut(s) 293
GluI GCNGC 3 cut(s) 78, 243, 666
HaeII RGCGCY 1 cut(s) 295
HapII CCGG 1 cut(s) 480
HhaI GCGC 1 cut(s) 294
Hin1II CATG 2 cut(s) 401, 643
Hin6I GCGC 1 cut(s) 292
HinP1I GCGC 1 cut(s) 292
HincII GTYRAC 1 cut(s) 606
HindII GTYRAC 1 cut(s) 606
HinfI GANTC 3 cut(s) 522, 624, 694
HpaII CCGG 1 cut(s) 480
HphI GGTGA 3 cut(s) 300, 601, 689
Hpy166II GTNNAC 2 cut(s) 277, 606
Hpy188I TCNGA 3 cut(s) 193, 521, 725
Hpy188III TCNNGA 2 cut(s) 398, 653
Hpy8I GTNNAC 2 cut(s) 277, 606
Hpy99I CGWCG 1 cut(s) 476
HpyAV CCTTC 1 cut(s) 554
HpyCH4III ACNGT 2 cut(s) 130, 678
HpyCH4V TGCA 5 cut(s) 80, 140, 152, 206, 317
HpyF10VI GCNNNNNNNGC 2 cut(s) 300, 550
HpyF3I CTNAG 3 cut(s) 192, 467, 651
Hsp92II CATG 2 cut(s) 401, 643
HspAI GCGC 1 cut(s) 292
KroI GCCGGC 1 cut(s) 479
KroNI GCCGGC 1 cut(s) 481
LguI GCTCTTC 1 cut(s) 560
LmnI GCTCC 2 cut(s) 74, 428
Lsp1109I GCAGC 2 cut(s) 64, 677
LweI GCATC 2 cut(s) 193, 466
MaeI CTAG 1 cut(s) 545
MaeIII GTNAC 4 cut(s) 259, 306, 634, 695
MboII GAAGA 6 cut(s) 49, 59, 104, 248, 418, 547
MhlI GDGCHC 2 cut(s) 555, 652
MluCI AATT 4 cut(s) 248, 345, 490, 701
MlyI GAGTC 1 cut(s) 703
MroNI GCCGGC 1 cut(s) 479
MroXI GAANNNNTTC 1 cut(s) 281
MspI CCGG 1 cut(s) 480
Mva1269I GAATGC 1 cut(s) 218
MwoI GCNNNNNNNGC 2 cut(s) 300, 550
NaeI GCCGGC 1 cut(s) 481
NgoMIV GCCGGC 1 cut(s) 479
NlaIII CATG 2 cut(s) 401, 643
NlaIV GGNNCC 1 cut(s) 430
NmuCI GTSAC 4 cut(s) 259, 306, 634, 695
NspV TTCGAA 1 cut(s) 558
PagI TCATGA 1 cut(s) 397
PciSI GCTCTTC 1 cut(s) 560
PctI GAATGC 1 cut(s) 218
PdiI GCCGGC 1 cut(s) 481
PdmI GAANNNNTTC 1 cut(s) 281
PfeI GAWTC 2 cut(s) 522, 624
PflFI GACNNNGTC 1 cut(s) 640
PkrI GCNGC 3 cut(s) 79, 244, 667
PleI GAGTC 1 cut(s) 702
PpsI GAGTC 1 cut(s) 702
Psp124BI GAGCTC 1 cut(s) 555
PspN4I GGNNCC 1 cut(s) 430
PsyI GACNNNGTC 1 cut(s) 640
SacI GAGCTC 1 cut(s) 555
SalI GTCGAC 1 cut(s) 604
SapI GCTCTTC 1 cut(s) 560
SatI GCNGC 3 cut(s) 78, 243, 666
SchI GAGTC 1 cut(s) 703
SduI GDGCHC 2 cut(s) 555, 652
SfaNI GCATC 2 cut(s) 193, 466
SfuI TTCGAA 1 cut(s) 558
SmlI CTYRAG 1 cut(s) 506
SmoI CTYRAG 1 cut(s) 506
Sse9I AATT 4 cut(s) 248, 345, 490, 701
SsiI CCGC 1 cut(s) 242
SspI AATATT 1 cut(s) 574
SspMI CTAG 1 cut(s) 545
SstI GAGCTC 1 cut(s) 555
TaaI ACNGT 2 cut(s) 130, 678
TaqI TCGA 6 cut(s) 440, 558, 605, 644, 673, 681
TasI AATT 4 cut(s) 248, 345, 490, 701
TauI GCSGC 1 cut(s) 245
TfiI GAWTC 2 cut(s) 522, 624
TscAI CASTG 2 cut(s) 135, 394
TseFI GTSAC 4 cut(s) 259, 306, 634, 695
TseI GCWGC 2 cut(s) 77, 665
Tsp45I GTSAC 4 cut(s) 259, 306, 634, 695
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 135, 394
Tth111I GACNNNGTC 1 cut(s) 640
XapI RAATTY 1 cut(s) 248
XmiI GTMKAC 1 cut(s) 605
XmnI GAANNNNTTC 1 cut(s) 281
XspI CTAG 1 cut(s) 545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.