RchiOBHm_Chr4g0418241

dual specificity protein phosphatase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
43654426 .. 43661659
7234 bp
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UTR
Exon/CDS
Intron
PRQ38823

Sequence Viewer

Length: 552 bp
ATGAATCAGGTAGATGATTCCCTTAGGAAGCAAGCTGCAGAAGTATTGCAATCTATGAATGACAGATTCTCTACATGGGACAATGTTCCATGCCAGATTGAAGAGGGTCTCTTCTTGGGTTCTATTGGAGCTGCAAACAACAAGGACGAACTGAAAAAGTTAAACGTGACGCACATTCTGACAGTAGCTAATTCTTTGCCACCTAAGTATCCGAATGATTTTGTGTATAAGGTATTGAATGTTACGGACACAGAATGCACAAACCTACGACAGCACTTCGATGAATGTTACAACTATATTGAAGAAGCTAAAGGATCTGGAGGCGGTGTGTTGGTTCATTGCTTTGTGGGAAGATCAAGAAGTGTGACTATTGTTTTGTCTTATCTAATGAAAAAGCATGGCATCAGCCTTTCTCATGCTCTTGAACAAGTGAGGAGCAAACGACCACAGGCAGCTCCAAATGTTGGTTTCATTTCACAGTTGCAGGACTTTGAAAAGTCTCTTCAGGGTTCACTATATAGTCGGTGCTTAAATTACATTATGAAAATGTAA

Protein Analysis

183

Amino Acids

20.61

Weight (kDa)

7.65

Isoelectric Point (pI)

56.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DSPc PF00782 37 - 166 1e-31 Dual specificity phosphatase, catalytic domain
PTP-SAK PF22784 46 - 143 8.8e-06 Swiss Army Knife protein, DSP-PTPase phosphatase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 464
AciI CCGC 1 cut(s) 324
AclWI GGATC 1 cut(s) 322
AcuI CTGAAG 1 cut(s) 488
AfiI CCNNNNNNNGG 1 cut(s) 464
AgsI TTSAA 5 cut(s) 101, 238, 302, 425, 494
AluBI AGCT 5 cut(s) 35, 131, 188, 308, 455
AluI AGCT 5 cut(s) 35, 131, 188, 308, 455
Alw26I GTCTC 2 cut(s) 113, 504
AlwI GGATC 1 cut(s) 322
ApeKI GCWGC 3 cut(s) 35, 131, 452
ArsI GACNNNNNNTTYG 2 cut(s) 358, 390
AxyI CCTNAGG 1 cut(s) 23
BaeI ACNNNNGTAYC 2 cut(s) 191, 224
BbvI GCAGC 3 cut(s) 22, 118, 464
BciVI GTATCC 1 cut(s) 219
BcoDI GTCTC 2 cut(s) 113, 504
BfmI CTRYAG 1 cut(s) 36
BfuI GTATCC 1 cut(s) 219
BisI GCNGC 3 cut(s) 36, 132, 453
BlsI GCNGC 3 cut(s) 37, 133, 454
BmsI GCATC 1 cut(s) 411
BpmI CTGGAG 1 cut(s) 339
BsaI GGTCTC 1 cut(s) 113
BsaXI ACNNNNNCTCC 2 cut(s) 312, 342
Bsc4I CCNNNNNNNGG 1 cut(s) 464
Bse21I CCTNAGG 1 cut(s) 23
Bse3DI GCAATG 1 cut(s) 337
BseLI CCNNNNNNNGG 1 cut(s) 464
BseMI GCAATG 1 cut(s) 337
BseRI GAGGAG 1 cut(s) 448
BseXI GCAGC 3 cut(s) 22, 118, 464
BslFI GGGAC 1 cut(s) 92
BslI CCNNNNNNNGG 1 cut(s) 464
BsmAI GTCTC 2 cut(s) 113, 504
BsmFI GGGAC 1 cut(s) 92
BsmI GAATGC 1 cut(s) 260
Bso31I GGTCTC 1 cut(s) 113
Bsp143I GATC 2 cut(s) 314, 353
BspACI CCGC 1 cut(s) 324
BspMAI CTGCAG 1 cut(s) 40
BspPI GGATC 1 cut(s) 322
BspTNI GGTCTC 1 cut(s) 113
BsrDI GCAATG 1 cut(s) 337
BssMI GATC 2 cut(s) 314, 353
Bst4CI ACNGT 2 cut(s) 184, 480
Bst6I CTCTTC 3 cut(s) 96, 116, 507
BstC8I GCNNGC 1 cut(s) 33
BstDEI CTNAG 2 cut(s) 23, 204
BstKTI GATC 2 cut(s) 317, 356
BstMAI GTCTC 2 cut(s) 113, 504
BstMBI GATC 2 cut(s) 314, 353
BstSFI CTRYAG 1 cut(s) 36
BstV1I GCAGC 3 cut(s) 22, 118, 464
BstX2I RGATCY 1 cut(s) 314
BstYI RGATCY 1 cut(s) 314
Bsu36I CCTNAGG 1 cut(s) 23
BsuI GTATCC 1 cut(s) 219
Cac8I GCNNGC 1 cut(s) 33
CseI GACGC 1 cut(s) 178
CviAII CATG 4 cut(s) 75, 90, 398, 416
CviJI RGCY 6 cut(s) 35, 131, 188, 308, 408, 455
CviKI_1 RGCY 6 cut(s) 35, 131, 188, 308, 408, 455
DdeI CTNAG 2 cut(s) 23, 204
DpnI GATC 2 cut(s) 316, 355
DpnII GATC 2 cut(s) 314, 353
Eam1104I CTCTTC 3 cut(s) 96, 116, 507
EarI CTCTTC 3 cut(s) 96, 116, 507
Eco31I GGTCTC 1 cut(s) 113
Eco57I CTGAAG 1 cut(s) 488
Eco81I CCTNAGG 1 cut(s) 23
FaeI CATG 4 cut(s) 78, 93, 401, 419
FaqI GGGAC 1 cut(s) 92
FatI CATG 4 cut(s) 74, 89, 397, 415
Fnu4HI GCNGC 3 cut(s) 36, 132, 453
Fsp4HI GCNGC 3 cut(s) 36, 132, 453
GluI GCNGC 3 cut(s) 36, 132, 453
GsuI CTGGAG 1 cut(s) 339
HgaI GACGC 1 cut(s) 178
Hin1II CATG 4 cut(s) 78, 93, 401, 419
HinfI GANTC 3 cut(s) 4, 17, 66
Hpy166II GTNNAC 1 cut(s) 512
Hpy188I TCNGA 2 cut(s) 180, 213
Hpy188III TCNNGA 3 cut(s) 318, 357, 422
Hpy8I GTNNAC 1 cut(s) 512
HpyCH4III ACNGT 2 cut(s) 184, 480
HpyCH4IV ACGT 1 cut(s) 165
HpyCH4V TGCA 5 cut(s) 38, 49, 134, 258, 484
HpyF3I CTNAG 2 cut(s) 23, 204
HpySE526I ACGT 1 cut(s) 165
Hsp92II CATG 4 cut(s) 78, 93, 401, 419
Kzo9I GATC 2 cut(s) 314, 353
LmnI GCTCC 3 cut(s) 128, 435, 460
LpnPI CCDG 5 cut(s) 107, 303, 434, 470, 491
Lsp1109I GCAGC 3 cut(s) 22, 118, 464
LweI GCATC 1 cut(s) 411
MaeII ACGT 1 cut(s) 165
MaeIII GTNAC 4 cut(s) 166, 241, 287, 364
MalI GATC 2 cut(s) 316, 355
MboI GATC 2 cut(s) 314, 353
MboII GAAGA 5 cut(s) 103, 113, 314, 363, 494
MflI RGATCY 1 cut(s) 314
MluCI AATT 2 cut(s) 190, 532
MnlI CCTC 3 cut(s) 97, 314, 426
MseI TTAA 2 cut(s) 161, 530
MslI CAYNNNNRTG 1 cut(s) 279
Mva1269I GAATGC 1 cut(s) 260
NdeII GATC 2 cut(s) 314, 353
NlaIII CATG 4 cut(s) 78, 93, 401, 419
NmuCI GTSAC 2 cut(s) 166, 364
PctI GAATGC 1 cut(s) 260
PfeI GAWTC 3 cut(s) 4, 17, 66
PflMI CCANNNNNTGG 1 cut(s) 464
PkrI GCNGC 3 cut(s) 37, 133, 454
PstI CTGCAG 1 cut(s) 40
PsuI RGATCY 1 cut(s) 314
RseI CAYNNNNRTG 1 cut(s) 279
SaqAI TTAA 2 cut(s) 161, 530
SatI GCNGC 3 cut(s) 36, 132, 453
Sau3AI GATC 2 cut(s) 314, 353
SfaNI GCATC 1 cut(s) 411
SfcI CTRYAG 1 cut(s) 36
SmiMI CAYNNNNRTG 1 cut(s) 279
Sse9I AATT 2 cut(s) 190, 532
SsiI CCGC 1 cut(s) 324
TaaI ACNGT 2 cut(s) 184, 480
TaiI ACGT 1 cut(s) 168
TaqI TCGA 1 cut(s) 279
TasI AATT 2 cut(s) 190, 532
TfiI GAWTC 3 cut(s) 4, 17, 66
Tru1I TTAA 2 cut(s) 161, 530
Tru9I TTAA 2 cut(s) 161, 530
TseFI GTSAC 2 cut(s) 166, 364
TseI GCWGC 3 cut(s) 35, 131, 452
Tsp45I GTSAC 2 cut(s) 166, 364
TspDTI ATGAA 6 cut(s) 17, 71, 297, 326, 404, 460
TspGWI ACGGA 1 cut(s) 260
Van91I CCANNNNNTGG 1 cut(s) 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.