Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000627

Physical Location & Seq

Genomic Coordinates Reverse (-)

11995696 .. 11999524

Gene Structure 3829 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G151900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGATCAGATGGATGAATCCCTTAAGAAACAAATTGCGGCATTGTTGAGAATTATACATGTGACAAGATGCTCCAAAGAGGACAATGTTCCATGCCAAATTGAAGAGGGTCTCTTCTTGGGTTCTATTGGAGCTGCTAATAACAAGGAGGAACTAAAAAACTTAAACATTACACACATTTTGACTGTGGCTAATTCATTTGAACCTTCATATCCAAATGATTTTGTGTATAAGATTATAAATGTTGCGGACAGAGTATCAACAGATTTAAAGCAGCACTTTGATGAGTGTATTGATTATATTGATGAAGCTAAAAGATCTGGTGGTGGTGTGTTGGTTCATTGCTTTGTGGGAAGATCCAGAAGTGTGACTATTGTTGTTGCATATCTGATGAAAAAGCATGGCATGAACCTATCTCAAGCTCTTGAGCATGTGAAGAGCAGACGACCTCAGGCAGCTCCAAATTCTGGTTTCATATCACAACTGCAGAGCTTTGAGAGGTCTCTTCATGCAGATGAAGAGAACAAGACAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005488 GO:0005515 GO:0005516 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008138 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04360 ko04810 map04360 map04810

Pfam Domains

Protein Families

DSPc

Protein Analysis

179

Amino Acids

19.97

Weight (kDa)

6.38

Isoelectric Point (pI)

59.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06110 AT3G06110 AT3G06110 AT3G23610 AT3G23610 AT3G23610 AT3G23610 AT3G23610 AT3G23610
fragaria_vesca	FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14580 FvH4_4g14580 FvH4_4g14700
malus_domestica	MD16G1184700.v1.1
prunus_persica	Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1
pyrus_communis	pycom13g15890 pycom16g15510
rosa_chinensis	RchiOBHm_Chr4g0396121 RchiOBHm_Chr4g0418191 RchiOBHm_Chr4g0418241 RchiOBHm_Chr4g0418281 RchiOBHm_Chr7g0218781
rosa_laevigata	RLG00000007880 RLG00000007884 RLG00000009570
rosa_multiflora	Rmu_co8157318.1_g000001 Rmu_sc0000032.1_g000004 Rmu_sc0000032.1_g000006 Rmu_sc0000408.1_g000002 Rmu_sc0006325.1_g000026 Rmu_sc0009634.1_g000005
rosa_roxburghii	Rroxscaffold_5G00340920 Rroxscaffold_5G00361410 Rroxscaffold_5G00361430 Rroxscaffold_5G00361460
rosa_rugosa	Rorug01G0235100 Rorug03G0352200.1 Rorug04G0150700 Rorug04G0151000 Rorug04G0151300 Rorug04G0151700 Rorug04G0151800 Rorug07G0049500
rosa_samantha	Rh2BG097600 Rh2CG099500 Rh2DG096900 Rh4AG213100 Rh4AG213300 Rh4BG064600 Rh4BG217300 Rh4BG217600 Rh4BG217700 Rh4CG071200 Rh4CG224400 Rh4CG224700 Rh4CG225000 Rh4DG061500 Rh4DG211300 Rh4DG211500 Rh4DG211900 Rh5AG356200 Rh6DG255000 Rh7AG321200 Rh7CG337700 Rh7DG282300
rosa_wichuraiana	Rw4G018090 Rw4G018120 Rw6G006740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	239
AccB7I	CCANNNNNTGG	1 cut(s)	467
AciI	CCGC	2 cut(s)	38, 248
AclWI	GGATC	2 cut(s)	12, 351
AcsI	RAATTY	1 cut(s)	463
AfiI	CCNNNNNNNGG	1 cut(s)	467
AflII	CTTAAG	1 cut(s)	23
AflIII	ACRYGT	1 cut(s)	58
AgsI	TTSAA	2 cut(s)	104, 203
AluBI	AGCT	5 cut(s)	134, 311, 422, 458, 492
AluI	AGCT	5 cut(s)	134, 311, 422, 458, 492
Alw26I	GTCTC	2 cut(s)	116, 507
AlwI	GGATC	2 cut(s)	12, 351
ApeKI	GCWGC	3 cut(s)	134, 274, 455
ApoI	RAATTY	1 cut(s)	463
AxyI	CCTNAGG	1 cut(s)	450
BbvI	GCAGC	3 cut(s)	121, 286, 467
BccI	CCATC	1 cut(s)	4
BcoDI	GTCTC	2 cut(s)	116, 507
BfmI	CTRYAG	1 cut(s)	485
BfrI	CTTAAG	1 cut(s)	23
BglII	AGATCT	1 cut(s)	317
BisI	GCNGC	4 cut(s)	39, 135, 275, 456
BlsI	GCNGC	4 cut(s)	40, 136, 276, 457
BmsI	GCATC	1 cut(s)	59
BpuEI	CTTGAG	2 cut(s)	402, 446
BsaI	GGTCTC	2 cut(s)	116, 507
Bsc4I	CCNNNNNNNGG	1 cut(s)	467
Bse21I	CCTNAGG	1 cut(s)	450
Bse3DI	GCAATG	1 cut(s)	340
BseGI	GGATG	1 cut(s)	19
BseLI	CCNNNNNNNGG	1 cut(s)	467
BseMI	GCAATG	1 cut(s)	340
BseMII	CTCAG	1 cut(s)	464
BseXI	GCAGC	3 cut(s)	121, 286, 467
BslI	CCNNNNNNNGG	1 cut(s)	467
BsmAI	GTCTC	2 cut(s)	116, 507
Bso31I	GGTCTC	2 cut(s)	116, 507
Bsp143I	GATC	3 cut(s)	4, 317, 356
BspACI	CCGC	2 cut(s)	38, 248
BspCNI	CTCAG	1 cut(s)	463
BspMAI	CTGCAG	1 cut(s)	489
BspPI	GGATC	2 cut(s)	12, 351
BspQI	GCTCTTC	1 cut(s)	431
BspTI	CTTAAG	1 cut(s)	23
BspTNI	GGTCTC	2 cut(s)	116, 507
BsrDI	GCAATG	1 cut(s)	340
BssMI	GATC	3 cut(s)	4, 317, 356
Bst4CI	ACNGT	1 cut(s)	187
Bst6I	CTCTTC	5 cut(s)	99, 119, 431, 510, 513
BstAFI	CTTAAG	1 cut(s)	23
BstDEI	CTNAG	1 cut(s)	450
BstF5I	GGATG	1 cut(s)	19
BstKTI	GATC	3 cut(s)	7, 320, 359
BstMAI	GTCTC	2 cut(s)	116, 507
BstMBI	GATC	3 cut(s)	4, 317, 356
BstNSI	RCATGY	2 cut(s)	62, 434
BstSFI	CTRYAG	1 cut(s)	485
BstV1I	GCAGC	3 cut(s)	121, 286, 467
BstX2I	RGATCY	2 cut(s)	317, 356
BstYI	RGATCY	2 cut(s)	317, 356
Bsu36I	CCTNAGG	1 cut(s)	450
BtsCI	GGATG	1 cut(s)	19
CviAII	CATG	6 cut(s)	59, 93, 401, 406, 431, 509
CviJI	RGCY	6 cut(s)	134, 191, 311, 422, 458, 492
CviKI_1	RGCY	6 cut(s)	134, 191, 311, 422, 458, 492
DdeI	CTNAG	1 cut(s)	450
DpnI	GATC	3 cut(s)	6, 319, 358
DpnII	GATC	3 cut(s)	4, 317, 356
DraI	TTTAAA	1 cut(s)	270
Eam1104I	CTCTTC	5 cut(s)	99, 119, 431, 510, 513
EarI	CTCTTC	5 cut(s)	99, 119, 431, 510, 513
Eco31I	GGTCTC	2 cut(s)	116, 507
Eco81I	CCTNAGG	1 cut(s)	450
FaeI	CATG	6 cut(s)	62, 96, 404, 409, 434, 512
FalI	AAGNNNNNCTT	2 cut(s)	263, 295
FatI	CATG	6 cut(s)	58, 92, 400, 405, 430, 508
Fnu4HI	GCNGC	4 cut(s)	39, 135, 275, 456
FokI	GGATG	1 cut(s)	26
Fsp4HI	GCNGC	4 cut(s)	39, 135, 275, 456
GluI	GCNGC	4 cut(s)	39, 135, 275, 456
Hin1II	CATG	6 cut(s)	62, 96, 404, 409, 434, 512
HinfI	GANTC	1 cut(s)	17
Hpy188I	TCNGA	2 cut(s)	9, 390
Hpy188III	TCNNGA	2 cut(s)	360, 425
HpyAV	CCTTC	1 cut(s)	216
HpyCH4III	ACNGT	1 cut(s)	187
HpyCH4V	TGCA	3 cut(s)	383, 487, 512
HpyF3I	CTNAG	1 cut(s)	450
Hsp92II	CATG	6 cut(s)	62, 96, 404, 409, 434, 512
Kzo9I	GATC	3 cut(s)	4, 317, 356
LguI	GCTCTTC	1 cut(s)	431
LmnI	GCTCC	3 cut(s)	77, 131, 463
LpnPI	CCDG	4 cut(s)	306, 373, 437, 453
Lsp1109I	GCAGC	3 cut(s)	121, 286, 467
LweI	GCATC	1 cut(s)	59
MaeIII	GTNAC	2 cut(s)	61, 367
MalI	GATC	3 cut(s)	6, 319, 358
MboI	GATC	3 cut(s)	4, 317, 356
MboII	GAAGA	6 cut(s)	106, 116, 366, 448, 497, 530
MflI	RGATCY	2 cut(s)	317, 356
MluCI	AATT	5 cut(s)	33, 51, 99, 193, 463
MnlI	CCTC	5 cut(s)	73, 100, 142, 459, 492
MseI	TTAA	3 cut(s)	24, 164, 269
MslI	CAYNNNNRTG	2 cut(s)	282, 513
MspCI	CTTAAG	1 cut(s)	23
NdeII	GATC	3 cut(s)	4, 317, 356
NlaIII	CATG	6 cut(s)	62, 96, 404, 409, 434, 512
NmuCI	GTSAC	2 cut(s)	61, 367
NspI	RCATGY	2 cut(s)	62, 434
PciI	ACATGT	1 cut(s)	58
PciSI	GCTCTTC	1 cut(s)	431
PfeI	GAWTC	1 cut(s)	17
PflMI	CCANNNNNTGG	1 cut(s)	467
PkrI	GCNGC	4 cut(s)	40, 136, 276, 457
PscI	ACATGT	1 cut(s)	58
PsiI	TTATAA	1 cut(s)	239
PstI	CTGCAG	1 cut(s)	489
PsuI	RGATCY	2 cut(s)	317, 356
RseI	CAYNNNNRTG	2 cut(s)	282, 513
SapI	GCTCTTC	1 cut(s)	431
SaqAI	TTAA	3 cut(s)	24, 164, 269
SatI	GCNGC	4 cut(s)	39, 135, 275, 456
Sau3AI	GATC	3 cut(s)	4, 317, 356
SetI	ASST	9 cut(s)	136, 208, 313, 414, 424, 451, 460, 494, 503
SfaNI	GCATC	1 cut(s)	59
SfcI	CTRYAG	1 cut(s)	485
SmiMI	CAYNNNNRTG	2 cut(s)	282, 513
SmlI	CTYRAG	3 cut(s)	23, 417, 425
SmoI	CTYRAG	3 cut(s)	23, 417, 425
Sse9I	AATT	5 cut(s)	33, 51, 99, 193, 463
SsiI	CCGC	2 cut(s)	38, 248
TaaI	ACNGT	1 cut(s)	187
TasI	AATT	5 cut(s)	33, 51, 99, 193, 463
TauI	GCSGC	1 cut(s)	41
TfiI	GAWTC	1 cut(s)	17
Tru1I	TTAA	3 cut(s)	24, 164, 269
Tru9I	TTAA	3 cut(s)	24, 164, 269
TseFI	GTSAC	2 cut(s)	61, 367
TseI	GCWGC	3 cut(s)	134, 274, 455
Tsp45I	GTSAC	2 cut(s)	61, 367
Van91I	CCANNNNNTGG	1 cut(s)	467
Vha464I	CTTAAG	1 cut(s)	23
XapI	RAATTY	1 cut(s)	463
XceI	RCATGY	2 cut(s)	62, 434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.