Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0000627

Physical Location & Seq

Genomic Coordinates Reverse (-)

15899676 .. 15901025

Gene Structure 1350 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1184700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGGCCTAGGACTACTGTGGTCCTATGGTCCCTCCGCCCCTGGACACTTGTACAGCATAGAAGAAAATATACTCTTGACTGAAACACTTTGCTTCCTAATATTATTTGAATTTGGAGTTTTTAATTGTTTTCCTTGCAGTGTGACTATTATTGTTGCATATCTGATGAAAAAGCATGCTATGAGCGTATCTCAAGCTCTTGAACATGTGAAGAGCAGACGACCTCAGGCATCTCCTAATGCTGGTTTCATTTCACAACTGCAGAGCCTTGAAAGGTCTCTTAGTGATGAAGAGAACAAGACAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005488 GO:0005515 GO:0005516 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008138 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04360 ko04810 map04360 map04810

Pfam Domains

Protein Families

DSPc

Protein Analysis

103

Amino Acids

11.35

Weight (kDa)

5.84

Isoelectric Point (pI)

71.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DSPc	PF00782	47 - 92	4.2e-12	Dual specificity phosphatase, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06110 AT3G06110 AT3G06110 AT3G23610 AT3G23610 AT3G23610 AT3G23610 AT3G23610 AT3G23610
fragaria_vesca	FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14580 FvH4_4g14580 FvH4_4g14700
malus_domestica	MD16G1184700.v1.1
prunus_persica	Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1
pyrus_communis	pycom13g15890 pycom16g15510
rosa_chinensis	RchiOBHm_Chr4g0396121 RchiOBHm_Chr4g0418191 RchiOBHm_Chr4g0418241 RchiOBHm_Chr4g0418281 RchiOBHm_Chr7g0218781
rosa_laevigata	RLG00000007880 RLG00000007884 RLG00000009570
rosa_multiflora	Rmu_co8157318.1_g000001 Rmu_sc0000032.1_g000004 Rmu_sc0000032.1_g000006 Rmu_sc0000408.1_g000002 Rmu_sc0006325.1_g000026 Rmu_sc0009634.1_g000005
rosa_roxburghii	Rroxscaffold_5G00340920 Rroxscaffold_5G00361410 Rroxscaffold_5G00361430 Rroxscaffold_5G00361460
rosa_rugosa	Rorug01G0235100 Rorug03G0352200.1 Rorug04G0150700 Rorug04G0151000 Rorug04G0151300 Rorug04G0151700 Rorug04G0151800 Rorug07G0049500
rosa_samantha	Rh2BG097600 Rh2CG099500 Rh2DG096900 Rh4AG213100 Rh4AG213300 Rh4BG064600 Rh4BG217300 Rh4BG217600 Rh4BG217700 Rh4CG071200 Rh4CG224400 Rh4CG224700 Rh4CG225000 Rh4DG061500 Rh4DG211300 Rh4DG211500 Rh4DG211900 Rh5AG356200 Rh6DG255000 Rh7AG321200 Rh7CG337700 Rh7DG282300
rosa_wichuraiana	Rw4G018090 Rw4G018120 Rw6G006740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	36
AcsI	RAATTY	1 cut(s)	110
AfaI	GTAC	1 cut(s)	53
AfiI	CCNNNNNNNGG	1 cut(s)	242
AflIII	ACRYGT	1 cut(s)	205
AgsI	TTSAA	3 cut(s)	110, 203, 272
AjnI	CCWGG	1 cut(s)	40
AluBI	AGCT	1 cut(s)	197
AluI	AGCT	1 cut(s)	197
Alw26I	GTCTC	1 cut(s)	282
AoxI	GGCC	1 cut(s)	4
ApoI	RAATTY	1 cut(s)	110
AspA2I	CCTAGG	1 cut(s)	7
AspS9I	GGNCC	3 cut(s)	4, 21, 29
AvaII	GGWCC	2 cut(s)	21, 29
AvrII	CCTAGG	1 cut(s)	7
AxyI	CCTNAGG	1 cut(s)	225
BarI	GAAGNNNNNNTAC	2 cut(s)	54, 86
BciT130I	CCWGG	1 cut(s)	42
BcoDI	GTCTC	1 cut(s)	282
BfaI	CTAG	1 cut(s)	8
BfmI	CTRYAG	1 cut(s)	260
BlnI	CCTAGG	1 cut(s)	7
Bme1390I	CCNGG	1 cut(s)	42
Bme18I	GGWCC	2 cut(s)	21, 29
BmgT120I	GGNCC	3 cut(s)	4, 21, 29
BmiI	GGNNCC	1 cut(s)	31
BmrFI	CCNGG	1 cut(s)	42
BmsI	GCATC	1 cut(s)	239
BplI	GAGNNNNNCTC	2 cut(s)	175, 207
BpuEI	CTTGAG	1 cut(s)	177
BsaI	GGTCTC	1 cut(s)	282
BsaJI	CCNNGG	2 cut(s)	7, 40
Bsc4I	CCNNNNNNNGG	1 cut(s)	242
Bse21I	CCTNAGG	1 cut(s)	225
BseBI	CCWGG	1 cut(s)	42
BseDI	CCNNGG	2 cut(s)	7, 40
BseLI	CCNNNNNNNGG	1 cut(s)	242
BseMII	CTCAG	1 cut(s)	239
BshFI	GGCC	1 cut(s)	6
BslFI	GGGAC	1 cut(s)	15
BslI	CCNNNNNNNGG	1 cut(s)	242
BsmAI	GTCTC	1 cut(s)	282
BsmFI	GGGAC	1 cut(s)	15
BsnI	GGCC	1 cut(s)	6
Bso31I	GGTCTC	1 cut(s)	282
Bsp1407I	TGTACA	1 cut(s)	51
BspACI	CCGC	1 cut(s)	36
BspANI	GGCC	1 cut(s)	6
BspCNI	CTCAG	1 cut(s)	238
BspLI	GGNNCC	1 cut(s)	31
BspMAI	CTGCAG	1 cut(s)	264
BspQI	GCTCTTC	1 cut(s)	206
BspTNI	GGTCTC	1 cut(s)	282
BsrGI	TGTACA	1 cut(s)	51
BssECI	CCNNGG	2 cut(s)	7, 40
BssT1I	CCWWGG	1 cut(s)	7
Bst2UI	CCWGG	1 cut(s)	42
Bst4CI	ACNGT	1 cut(s)	18
Bst6I	CTCTTC	2 cut(s)	206, 285
BstAUI	TGTACA	1 cut(s)	51
BstC8I	GCNNGC	1 cut(s)	177
BstDEI	CTNAG	2 cut(s)	225, 281
BstMAI	GTCTC	1 cut(s)	282
BstNI	CCWGG	1 cut(s)	42
BstNSI	RCATGY	2 cut(s)	179, 209
BstSCI	CCNGG	1 cut(s)	40
BstSFI	CTRYAG	1 cut(s)	260
Bsu36I	CCTNAGG	1 cut(s)	225
BsuRI	GGCC	1 cut(s)	6
BtsI	GCAGTG	1 cut(s)	145
BtsIMutI	CAGTG	1 cut(s)	145
Cac8I	GCNNGC	1 cut(s)	177
Cfr13I	GGNCC	3 cut(s)	4, 21, 29
Csp6I	GTAC	1 cut(s)	52
CviAII	CATG	2 cut(s)	176, 206
CviJI	RGCY	3 cut(s)	6, 197, 267
CviKI_1	RGCY	3 cut(s)	6, 197, 267
CviQI	GTAC	1 cut(s)	52
DdeI	CTNAG	2 cut(s)	225, 281
Eam1104I	CTCTTC	2 cut(s)	206, 285
EarI	CTCTTC	2 cut(s)	206, 285
EciI	GGCGGA	1 cut(s)	25
Eco130I	CCWWGG	1 cut(s)	7
Eco31I	GGTCTC	1 cut(s)	282
Eco47I	GGWCC	2 cut(s)	21, 29
Eco81I	CCTNAGG	1 cut(s)	225
EcoRII	CCWGG	1 cut(s)	40
EcoT14I	CCWWGG	1 cut(s)	7
ErhI	CCWWGG	1 cut(s)	7
FaeI	CATG	2 cut(s)	179, 209
FaiI	YATR	8 cut(s)	27, 59, 71, 160, 177, 182, 207, 307
FaqI	GGGAC	1 cut(s)	15
FatI	CATG	2 cut(s)	175, 205
FspBI	CTAG	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	6
Hin1II	CATG	2 cut(s)	179, 209
Hpy188I	TCNGA	1 cut(s)	165
Hpy188III	TCNNGA	2 cut(s)	76, 200
HpyCH4III	ACNGT	1 cut(s)	18
HpyCH4V	TGCA	3 cut(s)	138, 158, 262
HpyF3I	CTNAG	2 cut(s)	225, 281
Hsp92II	CATG	2 cut(s)	179, 209
LguI	GCTCTTC	1 cut(s)	206
LpnPI	CCDG	4 cut(s)	27, 54, 212, 228
LweI	GCATC	1 cut(s)	239
MaeI	CTAG	1 cut(s)	8
MaeIII	GTNAC	1 cut(s)	142
MboII	GAAGA	3 cut(s)	74, 223, 302
MluCI	AATT	2 cut(s)	110, 124
MnlI	CCTC	2 cut(s)	43, 234
MseI	TTAA	1 cut(s)	123
MspR9I	CCNGG	1 cut(s)	42
MvaI	CCWGG	1 cut(s)	42
NlaIII	CATG	2 cut(s)	179, 209
NlaIV	GGNNCC	1 cut(s)	31
NmuCI	GTSAC	1 cut(s)	142
NspI	RCATGY	2 cut(s)	179, 209
PaeI	GCATGC	1 cut(s)	179
PciI	ACATGT	1 cut(s)	205
PciSI	GCTCTTC	1 cut(s)	206
PscI	ACATGT	1 cut(s)	205
Psp6I	CCWGG	1 cut(s)	40
PspGI	CCWGG	1 cut(s)	40
PspN4I	GGNNCC	1 cut(s)	31
PspPI	GGNCC	3 cut(s)	4, 21, 29
PstI	CTGCAG	1 cut(s)	264
RsaI	GTAC	1 cut(s)	53
RsaNI	GTAC	1 cut(s)	52
SapI	GCTCTTC	1 cut(s)	206
SaqAI	TTAA	1 cut(s)	123
Sau96I	GGNCC	3 cut(s)	4, 21, 29
ScrFI	CCNGG	1 cut(s)	42
SetI	ASST	3 cut(s)	199, 226, 278
SfaNI	GCATC	1 cut(s)	239
SfcI	CTRYAG	1 cut(s)	260
SinI	GGWCC	2 cut(s)	21, 29
SmlI	CTYRAG	1 cut(s)	192
SmoI	CTYRAG	1 cut(s)	192
SphI	GCATGC	1 cut(s)	179
Sse9I	AATT	2 cut(s)	110, 124
SsiI	CCGC	1 cut(s)	36
SspI	AATATT	1 cut(s)	102
SspMI	CTAG	1 cut(s)	8
StyD4I	CCNGG	1 cut(s)	40
StyI	CCWWGG	1 cut(s)	7
TaaI	ACNGT	1 cut(s)	18
TasI	AATT	2 cut(s)	110, 124
TatI	WGTACW	1 cut(s)	51
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TscAI	CASTG	1 cut(s)	145
TseFI	GTSAC	1 cut(s)	142
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	3 cut(s)	182, 238, 303
TspRI	CASTG	1 cut(s)	145
VpaK11BI	GGWCC	2 cut(s)	21, 29
XapI	RAATTY	1 cut(s)	110
XceI	RCATGY	2 cut(s)	179, 209
XmaJI	CCTAGG	1 cut(s)	7
XspI	CTAG	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.