Rh4DG211300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000627
Physical Location & Seq
Forward (+)
40644477 .. 40654656
10180 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG211300.1

Sequence Viewer

Length: 270 bp
ATGGCTCAGGTAGATGATTACCTTAGGAAACAAGCTGCTGAATTGTTGCAAGCTTTGAATGAGGGATGCTATCAAGAGGACAATATCCCCTGCCAGATTGAAGAGCTTTTCGTTGATTTTGATCCACTTTATGTTAATGAAGTATGCATTAGGGTCGCCTACAAAATAAGCACCTACACTTCTCATGGGGTTGAGGATCAATGGAGTGAAAGCCAGAGACTTAGAGACATCAATACCGGGGAGATAAACATAAGGTCCATCTCCGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

10.33

Weight (kDa)

4.31

Isoelectric Point (pI)

51.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 116, 204
AgsI TTSAA 2 cut(s) 58, 101
AluBI AGCT 3 cut(s) 35, 53, 106
AluI AGCT 3 cut(s) 35, 53, 106
Alw26I GTCTC 2 cut(s) 211, 219
AlwI GGATC 2 cut(s) 116, 204
ApeKI GCWGC 1 cut(s) 35
AspS9I GGNCC 1 cut(s) 255
AsuC2I CCSGG 1 cut(s) 238
AvaII GGWCC 1 cut(s) 255
AxyI CCTNAGG 1 cut(s) 23
BbvI GCAGC 1 cut(s) 22
BccI CCATC 1 cut(s) 266
BcgI CGANNNNNNTGC 2 cut(s) 136, 170
BcnI CCSGG 1 cut(s) 238
BcoDI GTCTC 2 cut(s) 211, 219
BisI GCNGC 1 cut(s) 36
BlsI GCNGC 1 cut(s) 37
Bme1390I CCNGG 1 cut(s) 238
Bme18I GGWCC 1 cut(s) 255
BmgT120I GGNCC 1 cut(s) 255
BmrFI CCNGG 1 cut(s) 238
BmsI GCATC 1 cut(s) 56
Bpu10I CCTNAGC 1 cut(s) 6
BpuMI CCSGG 1 cut(s) 238
BsaBI GATNNNNATC 1 cut(s) 120
BsaJI CCNNGG 1 cut(s) 237
Bse21I CCTNAGG 1 cut(s) 23
Bse8I GATNNNNATC 1 cut(s) 120
BseDI CCNNGG 1 cut(s) 237
BseGI GGATG 1 cut(s) 71
BseJI GATNNNNATC 1 cut(s) 120
BseMII CTCAG 1 cut(s) 20
BseXI GCAGC 1 cut(s) 22
BsiSI CCGG 1 cut(s) 237
BsmAI GTCTC 2 cut(s) 211, 219
Bsp143I GATC 2 cut(s) 121, 196
BspCNI CTCAG 1 cut(s) 19
BspPI GGATC 2 cut(s) 116, 204
BspQI GCTCTTC 1 cut(s) 96
BssECI CCNNGG 1 cut(s) 237
BssMI GATC 2 cut(s) 121, 196
Bst6I CTCTTC 1 cut(s) 96
BstC8I GCNNGC 1 cut(s) 51
BstDEI CTNAG 3 cut(s) 6, 23, 221
BstF5I GGATG 1 cut(s) 71
BstKTI GATC 2 cut(s) 124, 199
BstMAI GTCTC 2 cut(s) 211, 219
BstMBI GATC 2 cut(s) 121, 196
BstSCI CCNGG 1 cut(s) 236
BstV1I GCAGC 1 cut(s) 22
Bsu36I CCTNAGG 1 cut(s) 23
BtsCI GGATG 1 cut(s) 71
Cac8I GCNNGC 1 cut(s) 51
Cfr13I GGNCC 1 cut(s) 255
CviAII CATG 1 cut(s) 185
CviJI RGCY 5 cut(s) 5, 35, 53, 106, 213
CviKI_1 RGCY 5 cut(s) 5, 35, 53, 106, 213
DdeI CTNAG 3 cut(s) 6, 23, 221
DpnI GATC 2 cut(s) 123, 198
DpnII GATC 2 cut(s) 121, 196
Eam1104I CTCTTC 1 cut(s) 96
EarI CTCTTC 1 cut(s) 96
Eco47I GGWCC 1 cut(s) 255
Eco81I CCTNAGG 1 cut(s) 23
EcoT22I ATGCAT 1 cut(s) 149
FaeI CATG 1 cut(s) 188
FaiI YATR 4 cut(s) 132, 145, 186, 251
FatI CATG 1 cut(s) 184
Fnu4HI GCNGC 1 cut(s) 36
FokI GGATG 1 cut(s) 78
Fsp4HI GCNGC 1 cut(s) 36
GluI GCNGC 1 cut(s) 36
HapII CCGG 1 cut(s) 237
Hin1II CATG 1 cut(s) 188
HindIII AAGCTT 1 cut(s) 51
HpaII CCGG 1 cut(s) 237
Hpy188I TCNGA 1 cut(s) 265
Hpy188III TCNNGA 1 cut(s) 74
HpyCH4V TGCA 2 cut(s) 49, 147
HpyF3I CTNAG 3 cut(s) 6, 23, 221
Hsp92II CATG 1 cut(s) 188
Kzo9I GATC 2 cut(s) 121, 196
LguI GCTCTTC 1 cut(s) 96
LpnPI CCDG 4 cut(s) 103, 107, 227, 250
Lsp1109I GCAGC 1 cut(s) 22
LweI GCATC 1 cut(s) 56
MalI GATC 2 cut(s) 123, 198
MboI GATC 2 cut(s) 121, 196
MboII GAAGA 1 cut(s) 113
MluCI AATT 1 cut(s) 41
MnlI CCTC 3 cut(s) 55, 70, 187
Mph1103I ATGCAT 1 cut(s) 149
MseI TTAA 1 cut(s) 135
MspI CCGG 1 cut(s) 237
MspR9I CCNGG 1 cut(s) 238
NciI CCSGG 1 cut(s) 238
NdeII GATC 2 cut(s) 121, 196
NlaIII CATG 1 cut(s) 188
NsiI ATGCAT 1 cut(s) 149
PciSI GCTCTTC 1 cut(s) 96
PkrI GCNGC 1 cut(s) 37
PspPI GGNCC 1 cut(s) 255
SapI GCTCTTC 1 cut(s) 96
SaqAI TTAA 1 cut(s) 135
SatI GCNGC 1 cut(s) 36
Sau3AI GATC 2 cut(s) 121, 196
Sau96I GGNCC 1 cut(s) 255
ScrFI CCNGG 1 cut(s) 238
SetI ASST 7 cut(s) 12, 24, 37, 55, 108, 176, 257
SfaNI GCATC 1 cut(s) 56
SinI GGWCC 1 cut(s) 255
Sse9I AATT 1 cut(s) 41
StyD4I CCNGG 1 cut(s) 236
TasI AATT 1 cut(s) 41
Tru1I TTAA 1 cut(s) 135
Tru9I TTAA 1 cut(s) 135
TseI GCWGC 1 cut(s) 35
TspDTI ATGAA 1 cut(s) 153
VpaK11BI GGWCC 1 cut(s) 255
Zsp2I ATGCAT 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.