Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000627

Physical Location & Seq

Genomic Coordinates Forward (+)

43634511 .. 43636195

Gene Structure 1685 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38818

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGCTCGGGTAGATGATTACCTTAGGAAACAAGCTGCTGAATTGTTGCAAGCTTTGAATGAGGGATGCTATAAAGAGGACAATATCCCCTGCCAGATTGAAGAGGGTCTCTTCTTGGGTTCTTTTGGAGCTGCAAATAACGAGGAAGAACTGACCAGGTTGAACATTACTCACATTTTGACAGTGGGTAGTGCAATGCCTCCTGCATATCCAAATGATTTTGTCTATAAGCACTTTGATGAGTGTTTCGATTACATTGAAGAAGCTAAAAGATCTGGTGGCAGTGTGCTGGTTCATTGCTTTGTGGGAAGATCCAGAAGTGTGGCTGTTGTTATTCCTTATCTTCTGAAAAAGCACGGTATGACCCTCTTCGAAGCTCTTGATCATGTGAAGAGTGGACGAGCATGGGCAGCTCCTAATGCTGGTTTCAGTACACAGCTGTATGAATATGAAATGTTTCTTTCTGGTAAGTCATTATCTCCTAAGTGGCTCCTTCTCAAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005488 GO:0005515 GO:0005516 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008138 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04360 ko04810 map04360 map04810

Pfam Domains

Protein Families

DSPc

Protein Analysis

168

Amino Acids

18.88

Weight (kDa)

5.73

Isoelectric Point (pI)

54.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DSPc	PF00782	71 - 151	8.2e-23	Dual specificity phosphatase, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06110 AT3G06110 AT3G06110 AT3G23610 AT3G23610 AT3G23610 AT3G23610 AT3G23610 AT3G23610
fragaria_vesca	FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14580 FvH4_4g14580 FvH4_4g14700
malus_domestica	MD16G1184700.v1.1
prunus_persica	Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1
pyrus_communis	pycom13g15890 pycom16g15510
rosa_chinensis	RchiOBHm_Chr4g0396121 RchiOBHm_Chr4g0418191 RchiOBHm_Chr4g0418241 RchiOBHm_Chr4g0418281 RchiOBHm_Chr7g0218781
rosa_laevigata	RLG00000007880 RLG00000007884 RLG00000009570
rosa_multiflora	Rmu_co8157318.1_g000001 Rmu_sc0000032.1_g000004 Rmu_sc0000032.1_g000006 Rmu_sc0000408.1_g000002 Rmu_sc0006325.1_g000026 Rmu_sc0009634.1_g000005
rosa_roxburghii	Rroxscaffold_5G00340920 Rroxscaffold_5G00361410 Rroxscaffold_5G00361430 Rroxscaffold_5G00361460
rosa_rugosa	Rorug01G0235100 Rorug03G0352200.1 Rorug04G0150700 Rorug04G0151000 Rorug04G0151300 Rorug04G0151700 Rorug04G0151800 Rorug07G0049500
rosa_samantha	Rh2BG097600 Rh2CG099500 Rh2DG096900 Rh4AG213100 Rh4AG213300 Rh4BG064600 Rh4BG217300 Rh4BG217600 Rh4BG217700 Rh4CG071200 Rh4CG224400 Rh4CG224700 Rh4CG225000 Rh4DG061500 Rh4DG211300 Rh4DG211500 Rh4DG211900 Rh5AG356200 Rh6DG255000 Rh7AG321200 Rh7CG337700 Rh7DG282300
rosa_wichuraiana	Rw4G018090 Rw4G018120 Rw6G006740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	306
AfaI	GTAC	1 cut(s)	433
AfiI	CCNNNNNNNGG	1 cut(s)	422
AgsI	TTSAA	4 cut(s)	58, 101, 163, 260
AjnI	CCWGG	1 cut(s)	155
AluBI	AGCT	7 cut(s)	35, 53, 131, 266, 377, 413, 439
AluI	AGCT	7 cut(s)	35, 53, 131, 266, 377, 413, 439
Alw26I	GTCTC	1 cut(s)	113
AlwI	GGATC	1 cut(s)	306
Ama87I	CYCGRG	1 cut(s)	6
ApeKI	GCWGC	3 cut(s)	35, 131, 410
Asp700I	GAANNNNTTC	1 cut(s)	456
AsuII	TTCGAA	1 cut(s)	372
AvaI	CYCGRG	1 cut(s)	6
AxyI	CCTNAGG	1 cut(s)	23
BbvI	GCAGC	3 cut(s)	22, 118, 422
BciT130I	CCWGG	1 cut(s)	157
BclI	TGATCA	1 cut(s)	382
BcoDI	GTCTC	1 cut(s)	113
BglII	AGATCT	1 cut(s)	272
BisI	GCNGC	3 cut(s)	36, 132, 411
BlsI	GCNGC	3 cut(s)	37, 133, 412
Bme1390I	CCNGG	1 cut(s)	157
BmeT110I	CYCGRG	1 cut(s)	6
BmiI	GGNNCC	1 cut(s)	491
BmrFI	CCNGG	1 cut(s)	157
BmsI	GCATC	1 cut(s)	56
Bpu14I	TTCGAA	1 cut(s)	372
BsaI	GGTCTC	1 cut(s)	113
Bsc4I	CCNNNNNNNGG	1 cut(s)	422
Bse21I	CCTNAGG	1 cut(s)	23
Bse3DI	GCAATG	2 cut(s)	201, 295
BseBI	CCWGG	1 cut(s)	157
BseGI	GGATG	1 cut(s)	71
BseLI	CCNNNNNNNGG	1 cut(s)	422
BseMI	GCAATG	2 cut(s)	201, 295
BseXI	GCAGC	3 cut(s)	22, 118, 422
BsiHKCI	CYCGRG	1 cut(s)	6
BslI	CCNNNNNNNGG	1 cut(s)	422
BsmAI	GTCTC	1 cut(s)	113
Bso31I	GGTCTC	1 cut(s)	113
BsoBI	CYCGRG	1 cut(s)	6
Bsp119I	TTCGAA	1 cut(s)	372
Bsp143I	GATC	3 cut(s)	272, 311, 382
BspLI	GGNNCC	1 cut(s)	491
BspPI	GGATC	1 cut(s)	306
BspT104I	TTCGAA	1 cut(s)	372
BspTNI	GGTCTC	1 cut(s)	113
BsrDI	GCAATG	2 cut(s)	201, 295
BssMI	GATC	3 cut(s)	272, 311, 382
Bst2UI	CCWGG	1 cut(s)	157
Bst4CI	ACNGT	2 cut(s)	184, 359
Bst6I	CTCTTC	4 cut(s)	96, 116, 374, 386
BstBI	TTCGAA	1 cut(s)	372
BstC8I	GCNNGC	1 cut(s)	51
BstDEI	CTNAG	2 cut(s)	23, 483
BstF5I	GGATG	1 cut(s)	71
BstKTI	GATC	3 cut(s)	275, 314, 385
BstMAI	GTCTC	1 cut(s)	113
BstMBI	GATC	3 cut(s)	272, 311, 382
BstMWI	GCNNNNNNNGC	2 cut(s)	410, 419
BstNI	CCWGG	1 cut(s)	157
BstSCI	CCNGG	1 cut(s)	155
BstV1I	GCAGC	3 cut(s)	22, 118, 422
BstX2I	RGATCY	2 cut(s)	272, 311
BstXI	CCANNNNNNTGG	1 cut(s)	322
BstYI	RGATCY	2 cut(s)	272, 311
Bsu36I	CCTNAGG	1 cut(s)	23
BtsCI	GGATG	1 cut(s)	71
BtsI	GCAGTG	1 cut(s)	289
BtsIMutI	CAGTG	2 cut(s)	189, 289
Cac8I	GCNNGC	1 cut(s)	51
CsiI	ACCWGGT	1 cut(s)	155
Csp6I	GTAC	1 cut(s)	432
CviAII	CATG	2 cut(s)	386, 405
CviQI	GTAC	1 cut(s)	432
DdeI	CTNAG	2 cut(s)	23, 483
DpnI	GATC	3 cut(s)	274, 313, 384
DpnII	GATC	3 cut(s)	272, 311, 382
Eam1104I	CTCTTC	4 cut(s)	96, 116, 374, 386
EarI	CTCTTC	4 cut(s)	96, 116, 374, 386
Eco31I	GGTCTC	1 cut(s)	113
Eco81I	CCTNAGG	1 cut(s)	23
Eco88I	CYCGRG	1 cut(s)	6
EcoRII	CCWGG	1 cut(s)	155
FaeI	CATG	2 cut(s)	389, 408
FaiI	YATR	8 cut(s)	72, 208, 228, 362, 387, 406, 444, 450
FatI	CATG	2 cut(s)	385, 404
FbaI	TGATCA	1 cut(s)	382
Fnu4HI	GCNGC	3 cut(s)	36, 132, 411
FokI	GGATG	1 cut(s)	78
Fsp4HI	GCNGC	3 cut(s)	36, 132, 411
GluI	GCNGC	3 cut(s)	36, 132, 411
Hin1II	CATG	2 cut(s)	389, 408
HindIII	AAGCTT	1 cut(s)	51
Hpy166II	GTNNAC	2 cut(s)	398, 434
Hpy188I	TCNGA	1 cut(s)	348
Hpy188III	TCNNGA	2 cut(s)	315, 380
Hpy8I	GTNNAC	2 cut(s)	398, 434
HpyAV	CCTTC	1 cut(s)	503
HpyCH4III	ACNGT	2 cut(s)	184, 359
HpyCH4V	TGCA	4 cut(s)	49, 134, 194, 206
HpyF10VI	GCNNNNNNNGC	2 cut(s)	410, 419
HpyF3I	CTNAG	2 cut(s)	23, 483
Hsp92II	CATG	2 cut(s)	389, 408
Ksp22I	TGATCA	1 cut(s)	382
Kzo9I	GATC	3 cut(s)	272, 311, 382
LmnI	GCTCC	3 cut(s)	128, 418, 495
Lsp1109I	GCAGC	3 cut(s)	22, 118, 422
LweI	GCATC	1 cut(s)	56
MabI	ACCWGGT	1 cut(s)	155
MalI	GATC	3 cut(s)	274, 313, 384
MboI	GATC	3 cut(s)	272, 311, 382
MboII	GAAGA	8 cut(s)	103, 113, 158, 272, 321, 335, 361, 403
MflI	RGATCY	2 cut(s)	272, 311
MluCI	AATT	2 cut(s)	41, 502
MnlI	CCTC	6 cut(s)	55, 70, 97, 136, 210, 377
MroXI	GAANNNNTTC	1 cut(s)	456
MslI	CAYNNNNRTG	1 cut(s)	237
MspA1I	CMGCKG	1 cut(s)	439
MspR9I	CCNGG	1 cut(s)	157
MvaI	CCWGG	1 cut(s)	157
MwoI	GCNNNNNNNGC	2 cut(s)	410, 419
NdeII	GATC	3 cut(s)	272, 311, 382
NlaIII	CATG	2 cut(s)	389, 408
NlaIV	GGNNCC	1 cut(s)	491
NspV	TTCGAA	1 cut(s)	372
PdmI	GAANNNNTTC	1 cut(s)	456
PkrI	GCNGC	3 cut(s)	37, 133, 412
Psp6I	CCWGG	1 cut(s)	155
PspGI	CCWGG	1 cut(s)	155
PspN4I	GGNNCC	1 cut(s)	491
PsuI	RGATCY	2 cut(s)	272, 311
PvuII	CAGCTG	1 cut(s)	439
RsaI	GTAC	1 cut(s)	433
RsaNI	GTAC	1 cut(s)	432
RseI	CAYNNNNRTG	1 cut(s)	237
SatI	GCNGC	3 cut(s)	36, 132, 411
Sau3AI	GATC	3 cut(s)	272, 311, 382
ScrFI	CCNGG	1 cut(s)	157
SetI	ASST	9 cut(s)	24, 37, 55, 133, 161, 268, 379, 415, 441
SexAI	ACCWGGT	1 cut(s)	155
SfaNI	GCATC	1 cut(s)	56
SfuI	TTCGAA	1 cut(s)	372
SmiMI	CAYNNNNRTG	1 cut(s)	237
Sse9I	AATT	2 cut(s)	41, 502
StyD4I	CCNGG	1 cut(s)	155
TaaI	ACNGT	2 cut(s)	184, 359
TaqI	TCGA	2 cut(s)	249, 372
TasI	AATT	2 cut(s)	41, 502
TatI	WGTACW	1 cut(s)	431
TscAI	CASTG	2 cut(s)	189, 289
TseI	GCWGC	3 cut(s)	35, 131, 410
TspDTI	ATGAA	3 cut(s)	284, 459, 465
TspRI	CASTG	2 cut(s)	189, 289
XmnI	GAANNNNTTC	1 cut(s)	456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.