Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000627

Physical Location & Seq

Genomic Coordinates Forward (+)

26569224 .. 26578632

Gene Structure 9409 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0151800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGTCCAATGGCAGTGTGGCTTCTCGTGTCAAAGGGAAACCAGTGTTGGATTGGGGAACTAGGAAACTAATTTCCTTGGGAGCTGCAAGAGGATCGTTATACCTTCATGAGCAGTGTGACCCGAAAATTATCCACAAGGATGTGAAGGTAGCAAATGCACTTCTTGATGACTACTGTGAAGCCGTGGTCGGAGATTTTGATTTGGCAAAGCTTTTGGATCACCAAGTGTTCTGTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005488 GO:0005515 GO:0005516 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008138 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04360 ko04810 map04360 map04810

Pfam Domains

Protein Families

DSPc

Protein Analysis

79

Amino Acids

8.6

Weight (kDa)

6.8

Isoelectric Point (pI)

12.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	1 - 75	1e-06	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06110 AT3G06110 AT3G06110 AT3G23610 AT3G23610 AT3G23610 AT3G23610 AT3G23610 AT3G23610
fragaria_vesca	FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14580 FvH4_4g14580 FvH4_4g14700
malus_domestica	MD16G1184700.v1.1
prunus_persica	Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1
pyrus_communis	pycom13g15890 pycom16g15510
rosa_chinensis	RchiOBHm_Chr4g0396121 RchiOBHm_Chr4g0418191 RchiOBHm_Chr4g0418241 RchiOBHm_Chr4g0418281 RchiOBHm_Chr7g0218781
rosa_laevigata	RLG00000007880 RLG00000007884 RLG00000009570
rosa_multiflora	Rmu_co8157318.1_g000001 Rmu_sc0000032.1_g000004 Rmu_sc0000032.1_g000006 Rmu_sc0000408.1_g000002 Rmu_sc0006325.1_g000026 Rmu_sc0009634.1_g000005
rosa_roxburghii	Rroxscaffold_5G00340920 Rroxscaffold_5G00361410 Rroxscaffold_5G00361430 Rroxscaffold_5G00361460
rosa_rugosa	Rorug01G0235100 Rorug03G0352200.1 Rorug04G0150700 Rorug04G0151000 Rorug04G0151300 Rorug04G0151700 Rorug04G0151800 Rorug07G0049500
rosa_samantha	Rh2BG097600 Rh2CG099500 Rh2DG096900 Rh4AG213100 Rh4AG213300 Rh4BG064600 Rh4BG217300 Rh4BG217600 Rh4BG217700 Rh4CG071200 Rh4CG224400 Rh4CG224700 Rh4CG225000 Rh4DG061500 Rh4DG211300 Rh4DG211500 Rh4DG211900 Rh5AG356200 Rh6DG255000 Rh7AG321200 Rh7CG337700 Rh7DG282300
rosa_wichuraiana	Rw4G018090 Rw4G018120 Rw6G006740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	100, 225
AdeI	CACNNNGTG	1 cut(s)	226
AjuI	GAANNNNNNNTTGG	2 cut(s)	29, 61
AluBI	AGCT	2 cut(s)	83, 211
AluI	AGCT	2 cut(s)	83, 211
AlwI	GGATC	2 cut(s)	100, 225
ApeKI	GCWGC	1 cut(s)	83
AsuHPI	GGTGA	1 cut(s)	212
BauI	CACGAG	1 cut(s)	24
BbvI	GCAGC	1 cut(s)	70
BceAI	ACGGC	1 cut(s)	167
BcgI	CGANNNNNNTGC	2 cut(s)	75, 109
BfaI	CTAG	1 cut(s)	60
BisI	GCNGC	1 cut(s)	84
BlsI	GCNGC	1 cut(s)	85
BsaJI	CCNNGG	2 cut(s)	75, 183
Bse1I	ACTGG	1 cut(s)	41
BseDI	CCNNGG	2 cut(s)	75, 183
BseGI	GGATG	1 cut(s)	145
BseNI	ACTGG	1 cut(s)	41
BseXI	GCAGC	1 cut(s)	70
Bsp143I	GATC	2 cut(s)	92, 217
BspHI	TCATGA	1 cut(s)	106
BspPI	GGATC	2 cut(s)	100, 225
BsrI	ACTGG	1 cut(s)	41
BssECI	CCNNGG	2 cut(s)	75, 183
BssMI	GATC	2 cut(s)	92, 217
BssSI	CACGAG	1 cut(s)	24
BssT1I	CCWWGG	1 cut(s)	75
Bst2BI	CACGAG	1 cut(s)	24
Bst4CI	ACNGT	1 cut(s)	176
BstDSI	CCRYGG	1 cut(s)	183
BstF5I	GGATG	1 cut(s)	145
BstKTI	GATC	2 cut(s)	95, 220
BstMBI	GATC	2 cut(s)	92, 217
BstV1I	GCAGC	1 cut(s)	70
BtgI	CCRYGG	1 cut(s)	183
BtsCI	GGATG	1 cut(s)	145
BtsI	GCAGTG	2 cut(s)	19, 119
BtsIMutI	CAGTG	3 cut(s)	19, 48, 119
CciI	TCATGA	1 cut(s)	106
CviAII	CATG	1 cut(s)	107
CviJI	RGCY	4 cut(s)	20, 83, 182, 211
CviKI_1	RGCY	4 cut(s)	20, 83, 182, 211
DpnI	GATC	2 cut(s)	94, 219
DpnII	GATC	2 cut(s)	92, 217
DraIII	CACNNNGTG	1 cut(s)	226
Eco130I	CCWWGG	1 cut(s)	75
EcoT14I	CCWWGG	1 cut(s)	75
ErhI	CCWWGG	1 cut(s)	75
FaeI	CATG	1 cut(s)	110
FaiI	YATR	2 cut(s)	100, 108
FatI	CATG	1 cut(s)	106
Fnu4HI	GCNGC	1 cut(s)	84
FokI	GGATG	1 cut(s)	152
Fsp4HI	GCNGC	1 cut(s)	84
FspBI	CTAG	1 cut(s)	60
GluI	GCNGC	1 cut(s)	84
Hin1II	CATG	1 cut(s)	110
HindIII	AAGCTT	1 cut(s)	209
HphI	GGTGA	1 cut(s)	212
Hpy188I	TCNGA	1 cut(s)	191
Hpy188III	TCNNGA	2 cut(s)	107, 164
HpyAV	CCTTC	2 cut(s)	113, 139
HpyCH4III	ACNGT	1 cut(s)	176
HpyCH4V	TGCA	2 cut(s)	86, 158
Hsp92II	CATG	1 cut(s)	110
Kzo9I	GATC	2 cut(s)	92, 217
LmnI	GCTCC	1 cut(s)	80
LpnPI	CCDG	1 cut(s)	54
Lsp1109I	GCAGC	1 cut(s)	70
MaeI	CTAG	1 cut(s)	60
MaeIII	GTNAC	1 cut(s)	116
MalI	GATC	2 cut(s)	94, 219
MboI	GATC	2 cut(s)	92, 217
MluCI	AATT	2 cut(s)	69, 126
MmeI	TCCRAC	2 cut(s)	27, 169
MnlI	CCTC	1 cut(s)	83
MseI	TTAA	1 cut(s)	238
MslI	CAYNNNNRTG	1 cut(s)	138
NdeII	GATC	2 cut(s)	92, 217
NlaIII	CATG	1 cut(s)	110
NmuCI	GTSAC	1 cut(s)	116
PagI	TCATGA	1 cut(s)	106
PkrI	GCNGC	1 cut(s)	85
RseI	CAYNNNNRTG	1 cut(s)	138
SaqAI	TTAA	1 cut(s)	238
SatI	GCNGC	1 cut(s)	84
Sau3AI	GATC	2 cut(s)	92, 217
SetI	ASST	4 cut(s)	85, 105, 150, 213
SmiMI	CAYNNNNRTG	1 cut(s)	138
Sse9I	AATT	2 cut(s)	69, 126
SspMI	CTAG	1 cut(s)	60
StyI	CCWWGG	1 cut(s)	75
TaaI	ACNGT	1 cut(s)	176
TasI	AATT	2 cut(s)	69, 126
Tru1I	TTAA	1 cut(s)	238
Tru9I	TTAA	1 cut(s)	238
TscAI	CASTG	3 cut(s)	19, 48, 119
TseFI	GTSAC	1 cut(s)	116
TseI	GCWGC	1 cut(s)	83
Tsp45I	GTSAC	1 cut(s)	116
TspDTI	ATGAA	1 cut(s)	95
TspRI	CASTG	3 cut(s)	19, 48, 119
XcmI	CCANNNNNNNNNTGG	3 cut(s)	13, 48, 230
XspI	CTAG	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.