Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0000627

Physical Location & Seq

Genomic Coordinates Reverse (-)

37767348 .. 37770839

Gene Structure 3492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG217300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGATCCGATAGAAGATTCCCTCAGGAAACAAATATCTGCTTTGTTGAGAGTTATCAATGTGACAAAGTGCTGTAAAGAGGACAATGTTCCATGCAAAATTGAAGAGGGTCTCTTCTTGGGTTCCATTGGAGCTGCACATAACAAGGACGAACTTAAAAAATTAAACATCACACACATTTTGACTGTGGCTGGTTCATTGGCACCTGCATATCCAAATGAATTTGTGTATAAGGTTTTGCATGTTGTGGACAAAGAATCGACAGACCTGAAACAGCACTTTGATGAGTGTTTCAATTATATTGAAGAAGGTAAAAGATCTGGTGGTGTGTTGGTTCATTGCTTTGTGGGAAAATCCAGGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005488 GO:0005515 GO:0005516 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008138 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04360 ko04810 map04360 map04810

Pfam Domains

Protein Families

DSPc

Protein Analysis

121

Amino Acids

13.57

Weight (kDa)

6.95

Isoelectric Point (pI)

64.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DSPc	PF00782	38 - 120	2.8e-09	Dual specificity phosphatase, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06110 AT3G06110 AT3G06110 AT3G23610 AT3G23610 AT3G23610 AT3G23610 AT3G23610 AT3G23610
fragaria_vesca	FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14580 FvH4_4g14580 FvH4_4g14700
malus_domestica	MD16G1184700.v1.1
prunus_persica	Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1
pyrus_communis	pycom13g15890 pycom16g15510
rosa_chinensis	RchiOBHm_Chr4g0396121 RchiOBHm_Chr4g0418191 RchiOBHm_Chr4g0418241 RchiOBHm_Chr4g0418281 RchiOBHm_Chr7g0218781
rosa_laevigata	RLG00000007880 RLG00000007884 RLG00000009570
rosa_multiflora	Rmu_co8157318.1_g000001 Rmu_sc0000032.1_g000004 Rmu_sc0000032.1_g000006 Rmu_sc0000408.1_g000002 Rmu_sc0006325.1_g000026 Rmu_sc0009634.1_g000005
rosa_roxburghii	Rroxscaffold_5G00340920 Rroxscaffold_5G00361410 Rroxscaffold_5G00361430 Rroxscaffold_5G00361460
rosa_rugosa	Rorug01G0235100 Rorug03G0352200.1 Rorug04G0150700 Rorug04G0151000 Rorug04G0151300 Rorug04G0151700 Rorug04G0151800 Rorug07G0049500
rosa_samantha	Rh2BG097600 Rh2CG099500 Rh2DG096900 Rh4AG213100 Rh4AG213300 Rh4BG064600 Rh4BG217300 Rh4BG217600 Rh4BG217700 Rh4CG071200 Rh4CG224400 Rh4CG224700 Rh4CG225000 Rh4DG061500 Rh4DG211300 Rh4DG211500 Rh4DG211900 Rh5AG356200 Rh6DG255000 Rh7AG321200 Rh7CG337700 Rh7DG282300
rosa_wichuraiana	Rw4G018090 Rw4G018120 Rw6G006740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	214
Acc36I	ACCTGC	1 cut(s)	214
AccB1I	GGYRCC	1 cut(s)	202
AclWI	GGATC	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	221
AgsI	TTSAA	3 cut(s)	104, 295, 305
AjnI	CCWGG	1 cut(s)	356
AluBI	AGCT	1 cut(s)	134
AluI	AGCT	1 cut(s)	134
Alw26I	GTCTC	1 cut(s)	116
AlwI	GGATC	1 cut(s)	12
ApeKI	GCWGC	1 cut(s)	134
ApoI	RAATTY	1 cut(s)	221
AxyI	CCTNAGG	1 cut(s)	23
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	202
BbvI	GCAGC	1 cut(s)	121
BciT130I	CCWGG	1 cut(s)	358
BcoDI	GTCTC	1 cut(s)	116
BfuAI	ACCTGC	1 cut(s)	214
BglII	AGATCT	1 cut(s)	317
BisI	GCNGC	1 cut(s)	135
BlsI	GCNGC	1 cut(s)	136
Bme1390I	CCNGG	1 cut(s)	358
BmiI	GGNNCC	3 cut(s)	6, 124, 204
BmrFI	CCNGG	1 cut(s)	358
BsaI	GGTCTC	1 cut(s)	116
Bse21I	CCTNAGG	1 cut(s)	23
Bse3DI	GCAATG	1 cut(s)	337
BseBI	CCWGG	1 cut(s)	358
BseMI	GCAATG	1 cut(s)	337
BseMII	CTCAG	1 cut(s)	37
BseXI	GCAGC	1 cut(s)	121
BsgI	GTGCAG	1 cut(s)	120
BshNI	GGYRCC	1 cut(s)	202
BsmAI	GTCTC	1 cut(s)	116
Bso31I	GGTCTC	1 cut(s)	116
Bsp143I	GATC	2 cut(s)	4, 317
BspCNI	CTCAG	1 cut(s)	36
BspLI	GGNNCC	3 cut(s)	6, 124, 204
BspMI	ACCTGC	1 cut(s)	214
BspPI	GGATC	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	202
BspTNI	GGTCTC	1 cut(s)	116
BsrDI	GCAATG	1 cut(s)	337
BssMI	GATC	2 cut(s)	4, 317
Bst2UI	CCWGG	1 cut(s)	358
Bst4CI	ACNGT	1 cut(s)	187
Bst6I	CTCTTC	2 cut(s)	99, 119
BstDEI	CTNAG	1 cut(s)	23
BstKTI	GATC	2 cut(s)	7, 320
BstMAI	GTCTC	1 cut(s)	116
BstMBI	GATC	2 cut(s)	4, 317
BstNI	CCWGG	1 cut(s)	358
BstNSI	RCATGY	1 cut(s)	245
BstSCI	CCNGG	1 cut(s)	356
BstV1I	GCAGC	1 cut(s)	121
BstX2I	RGATCY	2 cut(s)	4, 317
BstYI	RGATCY	2 cut(s)	4, 317
Bsu36I	CCTNAGG	1 cut(s)	23
BveI	ACCTGC	1 cut(s)	214
CviAII	CATG	2 cut(s)	93, 242
CviJI	RGCY	2 cut(s)	134, 191
CviKI_1	RGCY	2 cut(s)	134, 191
DdeI	CTNAG	1 cut(s)	23
DpnI	GATC	2 cut(s)	6, 319
DpnII	GATC	2 cut(s)	4, 317
Eam1104I	CTCTTC	2 cut(s)	99, 119
EarI	CTCTTC	2 cut(s)	99, 119
Eco31I	GGTCTC	1 cut(s)	116
Eco81I	CCTNAGG	1 cut(s)	23
EcoRII	CCWGG	1 cut(s)	356
FaeI	CATG	2 cut(s)	96, 245
FaiI	YATR	6 cut(s)	94, 141, 211, 231, 243, 300
FatI	CATG	2 cut(s)	92, 241
Fnu4HI	GCNGC	1 cut(s)	135
Fsp4HI	GCNGC	1 cut(s)	135
GluI	GCNGC	1 cut(s)	135
Hin1II	CATG	2 cut(s)	96, 245
HinfI	GANTC	2 cut(s)	17, 257
Hpy166II	GTNNAC	1 cut(s)	250
Hpy188I	TCNGA	1 cut(s)	9
Hpy188III	TCNNGA	1 cut(s)	25
Hpy8I	GTNNAC	1 cut(s)	250
HpyAV	CCTTC	1 cut(s)	302
HpyCH4III	ACNGT	1 cut(s)	187
HpyCH4V	TGCA	4 cut(s)	96, 137, 209, 241
HpyF3I	CTNAG	1 cut(s)	23
Hsp92II	CATG	2 cut(s)	96, 245
Kzo9I	GATC	2 cut(s)	4, 317
LmnI	GCTCC	1 cut(s)	131
LpnPI	CCDG	6 cut(s)	10, 177, 219, 281, 306, 343
Lsp1109I	GCAGC	1 cut(s)	121
MaeIII	GTNAC	1 cut(s)	61
MalI	GATC	2 cut(s)	6, 319
MboI	GATC	2 cut(s)	4, 317
MboII	GAAGA	4 cut(s)	26, 106, 116, 317
MflI	RGATCY	2 cut(s)	4, 317
MluCI	AATT	4 cut(s)	99, 161, 221, 295
MnlI	CCTC	4 cut(s)	32, 73, 100, 354
MseI	TTAA	2 cut(s)	156, 164
MslI	CAYNNNNRTG	1 cut(s)	282
MspR9I	CCNGG	1 cut(s)	358
MvaI	CCWGG	1 cut(s)	358
NdeII	GATC	2 cut(s)	4, 317
NlaIII	CATG	2 cut(s)	96, 245
NlaIV	GGNNCC	3 cut(s)	6, 124, 204
NmuCI	GTSAC	1 cut(s)	61
NspI	RCATGY	1 cut(s)	245
PaqCI	CACCTGC	1 cut(s)	214
PfeI	GAWTC	2 cut(s)	17, 257
PfoI	TCCNGGA	1 cut(s)	356
PkrI	GCNGC	1 cut(s)	136
Psp6I	CCWGG	1 cut(s)	356
PspGI	CCWGG	1 cut(s)	356
PspN4I	GGNNCC	3 cut(s)	6, 124, 204
PsuI	RGATCY	2 cut(s)	4, 317
RseI	CAYNNNNRTG	1 cut(s)	282
SaqAI	TTAA	2 cut(s)	156, 164
SatI	GCNGC	1 cut(s)	135
Sau3AI	GATC	2 cut(s)	4, 317
ScrFI	CCNGG	1 cut(s)	358
SetI	ASST	6 cut(s)	136, 208, 237, 270, 313, 365
SgeI	CNNG	9 cut(s)	37, 105, 130, 157, 204, 218, 254, 280, 333
SmiMI	CAYNNNNRTG	1 cut(s)	282
Sse9I	AATT	4 cut(s)	99, 161, 221, 295
StyD4I	CCNGG	1 cut(s)	356
TaaI	ACNGT	1 cut(s)	187
TaqI	TCGA	1 cut(s)	260
TasI	AATT	4 cut(s)	99, 161, 221, 295
TfiI	GAWTC	2 cut(s)	17, 257
Tru1I	TTAA	2 cut(s)	156, 164
Tru9I	TTAA	2 cut(s)	156, 164
TseFI	GTSAC	1 cut(s)	61
TseI	GCWGC	1 cut(s)	134
Tsp45I	GTSAC	1 cut(s)	61
TspDTI	ATGAA	3 cut(s)	186, 234, 326
XapI	RAATTY	1 cut(s)	221
XceI	RCATGY	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.