Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0000627

Physical Location & Seq

Genomic Coordinates Reverse (-)

22396527 .. 22402154

Gene Structure 5628 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007884

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGAATCAGGTAGATGATTCCCTTAGGAAGCAAGCTGCAGAAGTATTGCAATCTATGAATGACAGATTCTCTACATGGGACAATGTTCCATGCCAGATTGAAGAGGGTCTCTTCTTGGGTTCTATTGGAGCAGCAAACAACAAGGACGAACTCAAAAAGTTAAACGTGACGCACATTCTGACAGTAGCTAATTCTTTGCCACCTAAGTATCCGAATGATTTTGTGTATAAGGTATTGAATGTTACGGACACAGAATGCACAAACCTACGACAGCACTTCGATGAATGTTACAACTATATTGAAGAAGCTAAAGGATCTGGAGGCGGTGTGTTGGTTCATTGCTTTGTGGGAAGATCAAGAAGTGTGACTATTGTTTTGTCTTATCTAATGAAAAAGCATGGCATCAGCCTTTCTCATGCTCTTGAACAAGTGAGGAGCAAACGACCACAGGCAGCTCCAAATGTTGGTTTCATTTCACAGTTGCAGGACTTTGAAAAGTCTCTTCAGGGTTCACTATATAGTAGAATGCAAATCGTGTCAGATCAGTTTCTTGCAGCTATTTGCATATGCCTGTCCGTCAATGGATATCGACTCTGCAACAGAAAAACTGAACAAGCATGTACTGGAACACTACAGAAATTCACTCTTAAGGGAAGCCCAGCCTCCTTCCTCTTGCCAGAAAAACTAGTGCCGCCATCAAGCCGCCAGCCACCGACACCCACTGACCTGCCCACTACCGAGCTGCCAAACACCGACCCGCTTGACATCTTTAACGACCAAACGAAACACCATCAAGACGAAGCAGTATCCGAGCCCGTCGTCCTGCCATCTCCAGCAAAAGACTCCGCACCAACATCGATTGGGGTTCTCCACGACGTATCGTACTGCCTCCAATCATCGACGACAAGGAGATCTGACTGGTGCCTTTCACCTCCAACGCATAGACTCGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005488 GO:0005515 GO:0005516 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008138 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04360 ko04810 map04360 map04810

Pfam Domains

Protein Families

DSPc

Protein Analysis

318

Amino Acids

35.16

Weight (kDa)

6.31

Isoelectric Point (pI)

62.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DSPc	PF00782	37 - 166	4.5e-31	Dual specificity phosphatase, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06110 AT3G06110 AT3G06110 AT3G23610 AT3G23610 AT3G23610 AT3G23610 AT3G23610 AT3G23610
fragaria_vesca	FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14580 FvH4_4g14580 FvH4_4g14700
malus_domestica	MD16G1184700.v1.1
prunus_persica	Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1
pyrus_communis	pycom13g15890 pycom16g15510
rosa_chinensis	RchiOBHm_Chr4g0396121 RchiOBHm_Chr4g0418191 RchiOBHm_Chr4g0418241 RchiOBHm_Chr4g0418281 RchiOBHm_Chr7g0218781
rosa_laevigata	RLG00000007880 RLG00000007884 RLG00000009570
rosa_multiflora	Rmu_co8157318.1_g000001 Rmu_sc0000032.1_g000004 Rmu_sc0000032.1_g000006 Rmu_sc0000408.1_g000002 Rmu_sc0006325.1_g000026 Rmu_sc0009634.1_g000005
rosa_roxburghii	Rroxscaffold_5G00340920 Rroxscaffold_5G00361410 Rroxscaffold_5G00361430 Rroxscaffold_5G00361460
rosa_rugosa	Rorug01G0235100 Rorug03G0352200.1 Rorug04G0150700 Rorug04G0151000 Rorug04G0151300 Rorug04G0151700 Rorug04G0151800 Rorug07G0049500
rosa_samantha	Rh2BG097600 Rh2CG099500 Rh2DG096900 Rh4AG213100 Rh4AG213300 Rh4BG064600 Rh4BG217300 Rh4BG217600 Rh4BG217700 Rh4CG071200 Rh4CG224400 Rh4CG224700 Rh4CG225000 Rh4DG061500 Rh4DG211300 Rh4DG211500 Rh4DG211900 Rh5AG356200 Rh6DG255000 Rh7AG321200 Rh7CG337700 Rh7DG282300
rosa_wichuraiana	Rw4G018090 Rw4G018120 Rw6G006740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	735
AccB1I	GGYRCC	1 cut(s)	921
AccB7I	CCANNNNNTGG	1 cut(s)	464
AciI	CCGC	5 cut(s)	324, 692, 703, 758, 846
AclWI	GGATC	1 cut(s)	322
AcsI	RAATTY	1 cut(s)	638
AcuI	CTGAAG	1 cut(s)	488
AfaI	GTAC	2 cut(s)	622, 884
AfiI	CCNNNNNNNGG	1 cut(s)	464
AflII	CTTAAG	1 cut(s)	647
AgsI	TTSAA	5 cut(s)	101, 238, 302, 425, 494
AhlI	ACTAGT	1 cut(s)	685
AluBI	AGCT	6 cut(s)	35, 188, 308, 455, 557, 742
AluI	AGCT	6 cut(s)	35, 188, 308, 455, 557, 742
Alw26I	GTCTC	2 cut(s)	113, 504
AlwI	GGATC	1 cut(s)	322
ApeKI	GCWGC	5 cut(s)	35, 131, 452, 554, 742
ApoI	RAATTY	1 cut(s)	638
ArsI	GACNNNNNNTTYG	2 cut(s)	358, 390
AsuHPI	GGTGA	1 cut(s)	921
AxyI	CCTNAGG	1 cut(s)	23
BaeI	ACNNNNGTAYC	2 cut(s)	191, 224
BanI	GGYRCC	1 cut(s)	921
BanII	GRGCYC	1 cut(s)	816
BbvI	GCAGC	5 cut(s)	22, 143, 464, 566, 729
BccI	CCATC	3 cut(s)	703, 798, 835
BcgI	CGANNNNNNTGC	2 cut(s)	837, 871
BciVI	GTATCC	2 cut(s)	219, 817
BcoDI	GTCTC	2 cut(s)	113, 504
BcuI	ACTAGT	1 cut(s)	685
BfaI	CTAG	2 cut(s)	686, 952
BfmI	CTRYAG	2 cut(s)	36, 632
BfrI	CTTAAG	1 cut(s)	647
BfuAI	ACCTGC	1 cut(s)	735
BfuI	GTATCC	2 cut(s)	219, 817
BglII	AGATCT	1 cut(s)	911
BisI	GCNGC	7 cut(s)	36, 132, 453, 555, 692, 703, 743
BlsI	GCNGC	7 cut(s)	37, 133, 454, 556, 693, 704, 744
BmiI	GGNNCC	1 cut(s)	923
BmsI	GCATC	1 cut(s)	411
BpmI	CTGGAG	2 cut(s)	339, 816
Bsa29I	ATCGAT	1 cut(s)	857
BsaI	GGTCTC	1 cut(s)	113
BsaXI	ACNNNNNCTCC	2 cut(s)	312, 342
Bsc4I	CCNNNNNNNGG	1 cut(s)	464
Bse1I	ACTGG	2 cut(s)	628, 923
Bse21I	CCTNAGG	1 cut(s)	23
Bse3DI	GCAATG	1 cut(s)	337
BseCI	ATCGAT	1 cut(s)	857
BseLI	CCNNNNNNNGG	1 cut(s)	464
BseMI	GCAATG	1 cut(s)	337
BseNI	ACTGG	2 cut(s)	628, 923
BseRI	GAGGAG	1 cut(s)	448
BseXI	GCAGC	5 cut(s)	22, 143, 464, 566, 729
BseYI	CCCAGC	1 cut(s)	658
BshNI	GGYRCC	1 cut(s)	921
BshVI	ATCGAT	1 cut(s)	857
BslFI	GGGAC	1 cut(s)	92
BslI	CCNNNNNNNGG	1 cut(s)	464
BsmAI	GTCTC	2 cut(s)	113, 504
BsmFI	GGGAC	1 cut(s)	92
BsmI	GAATGC	2 cut(s)	260, 531
Bso31I	GGTCTC	1 cut(s)	113
Bsp1286I	GDGCHC	1 cut(s)	816
Bsp143I	GATC	4 cut(s)	314, 353, 541, 911
BspACI	CCGC	5 cut(s)	324, 692, 703, 758, 846
BspDI	ATCGAT	1 cut(s)	857
BspLI	GGNNCC	1 cut(s)	923
BspMAI	CTGCAG	1 cut(s)	40
BspMI	ACCTGC	1 cut(s)	735
BspPI	GGATC	1 cut(s)	322
BspT107I	GGYRCC	1 cut(s)	921
BspTI	CTTAAG	1 cut(s)	647
BspTNI	GGTCTC	1 cut(s)	113
BsrDI	GCAATG	1 cut(s)	337
BsrI	ACTGG	2 cut(s)	628, 923
BssMI	GATC	4 cut(s)	314, 353, 541, 911
Bst4CI	ACNGT	2 cut(s)	184, 480
Bst6I	CTCTTC	3 cut(s)	96, 116, 507
BstAFI	CTTAAG	1 cut(s)	647
BstC8I	GCNNGC	2 cut(s)	33, 707
BstDEI	CTNAG	2 cut(s)	23, 204
BstKTI	GATC	4 cut(s)	317, 356, 544, 914
BstMAI	GTCTC	2 cut(s)	113, 504
BstMBI	GATC	4 cut(s)	314, 353, 541, 911
BstNSI	RCATGY	1 cut(s)	621
BstSFI	CTRYAG	2 cut(s)	36, 632
BstV1I	GCAGC	5 cut(s)	22, 143, 464, 566, 729
BstX2I	RGATCY	2 cut(s)	314, 911
BstYI	RGATCY	2 cut(s)	314, 911
Bsu15I	ATCGAT	1 cut(s)	857
Bsu36I	CCTNAGG	1 cut(s)	23
BsuI	GTATCC	2 cut(s)	219, 817
BsuTUI	ATCGAT	1 cut(s)	857
BtsIMutI	CAGTG	1 cut(s)	720
BveI	ACCTGC	1 cut(s)	735
Cac8I	GCNNGC	2 cut(s)	33, 707
ClaI	ATCGAT	1 cut(s)	857
CseI	GACGC	1 cut(s)	178
Csp6I	GTAC	2 cut(s)	621, 883
CviAII	CATG	5 cut(s)	75, 90, 398, 416, 618
CviQI	GTAC	2 cut(s)	621, 883
DdeI	CTNAG	2 cut(s)	23, 204
DpnI	GATC	4 cut(s)	316, 355, 543, 913
DpnII	GATC	4 cut(s)	314, 353, 541, 911
Eam1104I	CTCTTC	3 cut(s)	96, 116, 507
EarI	CTCTTC	3 cut(s)	96, 116, 507
Eco24I	GRGCYC	1 cut(s)	816
Eco31I	GGTCTC	1 cut(s)	113
Eco32I	GATATC	1 cut(s)	587
Eco57I	CTGAAG	1 cut(s)	488
Eco81I	CCTNAGG	1 cut(s)	23
EcoRV	GATATC	1 cut(s)	587
EcoT38I	GRGCYC	1 cut(s)	816
FaeI	CATG	5 cut(s)	78, 93, 401, 419, 621
FaqI	GGGAC	1 cut(s)	92
FatI	CATG	5 cut(s)	74, 89, 397, 415, 617
FauI	CCCGC	1 cut(s)	765
FauNDI	CATATG	1 cut(s)	566
Fnu4HI	GCNGC	7 cut(s)	36, 132, 453, 555, 692, 703, 743
FriOI	GRGCYC	1 cut(s)	816
Fsp4HI	GCNGC	7 cut(s)	36, 132, 453, 555, 692, 703, 743
FspBI	CTAG	2 cut(s)	686, 952
GluI	GCNGC	7 cut(s)	36, 132, 453, 555, 692, 703, 743
GsaI	CCCAGC	1 cut(s)	662
GsuI	CTGGAG	2 cut(s)	339, 816
HgaI	GACGC	1 cut(s)	178
Hin1II	CATG	5 cut(s)	78, 93, 401, 419, 621
HinfI	GANTC	6 cut(s)	4, 17, 66, 591, 842, 945
HphI	GGTGA	1 cut(s)	921
Hpy166II	GTNNAC	1 cut(s)	512
Hpy188I	TCNGA	5 cut(s)	180, 213, 541, 811, 916
Hpy188III	TCNNGA	4 cut(s)	318, 357, 422, 794
Hpy8I	GTNNAC	1 cut(s)	512
Hpy99I	CGWCG	3 cut(s)	821, 878, 904
HpyAV	CCTTC	1 cut(s)	676
HpyCH4III	ACNGT	2 cut(s)	184, 480
HpyCH4IV	ACGT	2 cut(s)	165, 876
HpyCH4V	TGCA	8 cut(s)	38, 49, 258, 484, 529, 554, 564, 597
HpyF3I	CTNAG	2 cut(s)	23, 204
HpySE526I	ACGT	2 cut(s)	165, 876
Hsp92II	CATG	5 cut(s)	78, 93, 401, 419, 621
Kzo9I	GATC	4 cut(s)	314, 353, 541, 911
LmnI	GCTCC	3 cut(s)	128, 435, 460
Lsp1109I	GCAGC	5 cut(s)	22, 143, 464, 566, 729
LweI	GCATC	1 cut(s)	411
MaeI	CTAG	2 cut(s)	686, 952
MaeII	ACGT	2 cut(s)	165, 876
MaeIII	GTNAC	4 cut(s)	166, 241, 287, 364
MalI	GATC	4 cut(s)	316, 355, 543, 913
MboI	GATC	4 cut(s)	314, 353, 541, 911
MboII	GAAGA	5 cut(s)	103, 113, 314, 363, 494
MflI	RGATCY	2 cut(s)	314, 911
MhlI	GDGCHC	1 cut(s)	816
MluCI	AATT	2 cut(s)	190, 638
MlyI	GAGTC	3 cut(s)	585, 836, 939
MnlI	CCTC	7 cut(s)	97, 314, 426, 673, 680, 899, 942
MseI	TTAA	3 cut(s)	161, 648, 771
MslI	CAYNNNNRTG	1 cut(s)	279
MspCI	CTTAAG	1 cut(s)	647
Mva1269I	GAATGC	2 cut(s)	260, 531
NdeI	CATATG	1 cut(s)	566
NdeII	GATC	4 cut(s)	314, 353, 541, 911
NlaIII	CATG	5 cut(s)	78, 93, 401, 419, 621
NlaIV	GGNNCC	1 cut(s)	923
NmuCI	GTSAC	2 cut(s)	166, 364
NspI	RCATGY	1 cut(s)	621
PctI	GAATGC	2 cut(s)	260, 531
PfeI	GAWTC	3 cut(s)	4, 17, 66
PflMI	CCANNNNNTGG	1 cut(s)	464
PkrI	GCNGC	7 cut(s)	37, 133, 454, 556, 693, 704, 744
PleI	GAGTC	3 cut(s)	585, 836, 939
PpsI	GAGTC	3 cut(s)	585, 836, 939
PspFI	CCCAGC	1 cut(s)	658
PspN4I	GGNNCC	1 cut(s)	923
PstI	CTGCAG	1 cut(s)	40
PsuI	RGATCY	2 cut(s)	314, 911
RsaI	GTAC	2 cut(s)	622, 884
RsaNI	GTAC	2 cut(s)	621, 883
RseI	CAYNNNNRTG	1 cut(s)	279
SaqAI	TTAA	3 cut(s)	161, 648, 771
SatI	GCNGC	7 cut(s)	36, 132, 453, 555, 692, 703, 743
Sau3AI	GATC	4 cut(s)	314, 353, 541, 911
SchI	GAGTC	3 cut(s)	585, 836, 939
SduI	GDGCHC	1 cut(s)	816
SfaNI	GCATC	1 cut(s)	411
SfcI	CTRYAG	2 cut(s)	36, 632
SmiMI	CAYNNNNRTG	1 cut(s)	279
SmlI	CTYRAG	1 cut(s)	647
SmoI	CTYRAG	1 cut(s)	647
SpeI	ACTAGT	1 cut(s)	685
Sse9I	AATT	2 cut(s)	190, 638
SsiI	CCGC	5 cut(s)	324, 692, 703, 758, 846
SspMI	CTAG	2 cut(s)	686, 952
TaaI	ACNGT	2 cut(s)	184, 480
TaiI	ACGT	2 cut(s)	168, 879
TaqI	TCGA	5 cut(s)	279, 589, 857, 899, 948
TasI	AATT	2 cut(s)	190, 638
TatI	WGTACW	1 cut(s)	620
TauI	GCSGC	2 cut(s)	694, 705
TfiI	GAWTC	3 cut(s)	4, 17, 66
Tru1I	TTAA	3 cut(s)	161, 648, 771
Tru9I	TTAA	3 cut(s)	161, 648, 771
TscAI	CASTG	1 cut(s)	727
TseFI	GTSAC	2 cut(s)	166, 364
TseI	GCWGC	5 cut(s)	35, 131, 452, 554, 742
Tsp45I	GTSAC	2 cut(s)	166, 364
TspDTI	ATGAA	6 cut(s)	17, 71, 297, 326, 404, 460
TspGWI	ACGGA	2 cut(s)	260, 565
TspRI	CASTG	1 cut(s)	727
Van91I	CCANNNNNTGG	1 cut(s)	464
Vha464I	CTTAAG	1 cut(s)	647
XapI	RAATTY	1 cut(s)	638
XceI	RCATGY	1 cut(s)	621
XspI	CTAG	2 cut(s)	686, 952

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.