Rorug04G0150700

dual specificity protein phosphatase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
26422250 .. 26423080
831 bp
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UTR
Exon/CDS
Intron
Rorug04G0150700.1

Sequence Viewer

Length: 498 bp
ATGATGGGAAAGAGGGACAAAGTCTTGAGTATGTTGAACACTCTGACTGCACAAAATGTGAATGTCAATCAGAACCTTCAAACTGATGGCTTAGCAGAAAAAGTAAGCCCCAAGAAAGTTTCAAAAAAGAAAGCTGGAGAGCAACAGGAGGTGTTACAGGTACATGGGGAAGACTTGCAACCAAAAAAGAAGACCTCCTTGATTTGCCTATCTGACTCAACATCTGTAGTCAGCCCACTGAAAAGTATGAAGAAAGTTGATGCCAACCCCACGACCAAGAGTAACATAGAGAAGATTGGTAACTTCAAAGTCAAGGGAGATCGGGAGGAGGCTGACAAAGGAGTGCTCAGGTTTGTTTATGATGTGTCAGCTGAAGAGAAGGAGACCATTGTGGATAGTGAAAATTTCTTCACTAGTCGAAAGCAGTTTGGTCACTTAAACCTAACGGATGGGTTGAAGATGATATTATCAAGGATTAATTTTAGTTTACCCCCCTGA

Protein Analysis

165

Amino Acids

18.37

Weight (kDa)

9.36

Isoelectric Point (pI)

36.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 403
AcuI CTGAAG 1 cut(s) 393
AfaI GTAC 1 cut(s) 162
AgsI TTSAA 5 cut(s) 37, 80, 123, 307, 457
AhlI ACTAGT 1 cut(s) 413
AluBI AGCT 2 cut(s) 134, 371
AluI AGCT 2 cut(s) 134, 371
Alw21I GWGCWC 1 cut(s) 348
Alw26I GTCTC 1 cut(s) 377
ApoI RAATTY 1 cut(s) 403
AseI ATTAAT 1 cut(s) 477
BbsI GAAGAC 2 cut(s) 177, 197
Bbv12I GWGCWC 1 cut(s) 348
BccI CCATC 2 cut(s) 80, 443
BcoDI GTCTC 1 cut(s) 377
BcuI ACTAGT 1 cut(s) 413
BfaI CTAG 1 cut(s) 414
BfmI CTRYAG 1 cut(s) 225
BlpI GCTNAGC 1 cut(s) 91
BmsI GCATC 1 cut(s) 250
BpiI GAAGAC 2 cut(s) 177, 197
BpmI CTGGAG 1 cut(s) 156
Bpu10I CCTNAGC 1 cut(s) 347
Bpu1102I GCTNAGC 1 cut(s) 91
BpuEI CTTGAG 1 cut(s) 46
BsaI GGTCTC 1 cut(s) 377
BseGI GGATG 1 cut(s) 454
BseMII CTCAG 1 cut(s) 361
BseRI GAGGAG 1 cut(s) 341
BsgI GTGCAG 1 cut(s) 33
BsiHKAI GWGCWC 1 cut(s) 348
BslFI GGGAC 1 cut(s) 29
BsmAI GTCTC 1 cut(s) 377
BsmFI GGGAC 1 cut(s) 29
Bso31I GGTCTC 1 cut(s) 377
Bsp1286I GDGCHC 1 cut(s) 348
Bsp143I GATC 1 cut(s) 319
Bsp1720I GCTNAGC 1 cut(s) 91
BspCNI CTCAG 1 cut(s) 360
BspTNI GGTCTC 1 cut(s) 377
BssMI GATC 1 cut(s) 319
Bst6I CTCTTC 1 cut(s) 369
BstDEI CTNAG 2 cut(s) 91, 347
BstF5I GGATG 1 cut(s) 454
BstKTI GATC 1 cut(s) 322
BstMAI GTCTC 1 cut(s) 377
BstMBI GATC 1 cut(s) 319
BstSFI CTRYAG 1 cut(s) 225
BstV2I GAAGAC 2 cut(s) 177, 197
BtsCI GGATG 1 cut(s) 454
BtsIMutI CAGTG 1 cut(s) 236
Csp6I GTAC 1 cut(s) 161
CviAII CATG 1 cut(s) 164
CviJI RGCY 6 cut(s) 90, 108, 134, 234, 332, 371
CviKI_1 RGCY 6 cut(s) 90, 108, 134, 234, 332, 371
CviQI GTAC 1 cut(s) 161
DdeI CTNAG 2 cut(s) 91, 347
DpnI GATC 1 cut(s) 321
DpnII GATC 1 cut(s) 319
Eam1104I CTCTTC 1 cut(s) 369
EarI CTCTTC 1 cut(s) 369
Eco31I GGTCTC 1 cut(s) 377
Eco57I CTGAAG 1 cut(s) 393
FaeI CATG 1 cut(s) 167
FaiI YATR 5 cut(s) 32, 165, 248, 287, 360
FalI AAGNNNNNCTT 2 cut(s) 182, 214
FaqI GGGAC 1 cut(s) 29
FatI CATG 1 cut(s) 163
FokI GGATG 1 cut(s) 461
FspBI CTAG 1 cut(s) 414
GsuI CTGGAG 1 cut(s) 156
Hin1II CATG 1 cut(s) 167
HinfI GANTC 1 cut(s) 215
Hpy166II GTNNAC 1 cut(s) 488
Hpy188I TCNGA 3 cut(s) 45, 72, 214
Hpy188III TCNNGA 2 cut(s) 25, 323
Hpy8I GTNNAC 1 cut(s) 488
HpyAV CCTTC 2 cut(s) 86, 373
HpyCH4V TGCA 2 cut(s) 50, 178
HpyF3I CTNAG 2 cut(s) 91, 347
Hsp92II CATG 1 cut(s) 167
Kzo9I GATC 1 cut(s) 319
LpnPI CCDG 4 cut(s) 120, 131, 143, 334
LweI GCATC 1 cut(s) 250
MaeI CTAG 1 cut(s) 414
MaeIII GTNAC 4 cut(s) 153, 281, 299, 431
MalI GATC 1 cut(s) 321
MboI GATC 1 cut(s) 319
MboII GAAGA 7 cut(s) 182, 202, 262, 304, 386, 400, 469
MhlI GDGCHC 1 cut(s) 348
MluCI AATT 2 cut(s) 403, 478
MlyI GAGTC 1 cut(s) 209
MnlI CCTC 5 cut(s) 6, 142, 205, 319, 322
MseI TTAA 2 cut(s) 437, 477
MspA1I CMGCKG 1 cut(s) 371
NdeII GATC 1 cut(s) 319
NlaIII CATG 1 cut(s) 167
NmuCI GTSAC 1 cut(s) 431
PflFI GACNNNGTC 1 cut(s) 20
PleI GAGTC 1 cut(s) 209
PpsI GAGTC 1 cut(s) 209
PshBI ATTAAT 1 cut(s) 477
PsyI GACNNNGTC 1 cut(s) 20
PvuII CAGCTG 1 cut(s) 371
RsaI GTAC 1 cut(s) 162
RsaNI GTAC 1 cut(s) 161
SaqAI TTAA 2 cut(s) 437, 477
Sau3AI GATC 1 cut(s) 319
SchI GAGTC 1 cut(s) 209
SduI GDGCHC 1 cut(s) 348
SetI ASST 8 cut(s) 78, 136, 153, 162, 197, 353, 373, 444
SfaNI GCATC 1 cut(s) 250
SfcI CTRYAG 1 cut(s) 225
SmlI CTYRAG 1 cut(s) 25
SmoI CTYRAG 1 cut(s) 25
SpeI ACTAGT 1 cut(s) 413
Sse9I AATT 2 cut(s) 403, 478
SspMI CTAG 1 cut(s) 414
TaqI TCGA 1 cut(s) 418
TasI AATT 2 cut(s) 403, 478
Tru1I TTAA 2 cut(s) 437, 477
Tru9I TTAA 2 cut(s) 437, 477
TscAI CASTG 1 cut(s) 243
TseFI GTSAC 1 cut(s) 431
Tsp45I GTSAC 1 cut(s) 431
TspDTI ATGAA 1 cut(s) 263
TspGWI ACGGA 1 cut(s) 461
TspRI CASTG 1 cut(s) 243
Tth111I GACNNNGTC 1 cut(s) 20
VspI ATTAAT 1 cut(s) 477
XapI RAATTY 1 cut(s) 403
XspI CTAG 1 cut(s) 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.